Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g29360 | OGI:10048790 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:15264853-15265191 | ||||||||
| Gene Symbol | OsMB20, MB20, OsMB20a, OsMB20b, DLN234, OsDLN234, OsMB30, MB30, - | ||||||||||
| DNA seq | ATGAACCAGCAGCTCGGCGACCTGCTGGAGACCGGGAAGGGCGCGGATGTGGTGTTTGAGGTTGCCGGCCAGACATTCGCGGCGCGGTCGCCGGTCTTCAGCGTGGAGCTCTACGGTCCGATGAAGGAGAGCGAACCCACCGGGGTCGTGTGCGTCCAAGACATGGAGGCGCAGGTGTTCAAAGCGTTGCTCCGCTTCATGTACACCGACTCGTTGCCGAAGATGGAGGAGGAGGAAGGCGTCATGTGCCAGCATCTGCTCGTTGCGGCGGATCGGTACAACCTGGAGAGGCTCAAGCTGATCTGCGAGGAGAAGCTGTGCAAGGGGAAACTATTTTAA |
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| CDS seq | ATGAACCAGCAGCTCGGCGACCTGCTGGAGACCGGGAAGGGCGCGGATGTGGTGTTTGAGGTTGCCGGCCAGACATTCGCGGCGCGGTCGCCGGTCTTCAGCGTGGAGCTCTACGGTCCGATGAAGGAGAGCGAACCCACCGGGGTCGTGTGCGTCCAAGACATGGAGGCGCAGGTGTTCAAAGCGTTGCTCCGCTTCATGTACACCGACTCGTTGCCGAAGATGGAGGAGGAGGAAGGCGTCATGTGCCAGCATCTGCTCGTTGCGGCGGATCGGTACAACCTGGAGAGGCTCAAGCTGATCTGCGAGGAGAAGCTGTGCAAGGGGAAACTATTTTAA |
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| Protein seq | MNQQLGDLLETGKGADVVFEVAGQTFAARSPVFSVELYGPMKESEPTGVVCVQDMEAQVFKALLRFMYTDSLPKMEEEEGVMCQHLLVAADRYNLERLKLICEEKLCKGKLF |
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| Function | BTB/POZ and MATH domain-containing protein 1 [UniProtKB/Swiss-Prot:Q8L765] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g29360 | LOC_Os10g29360.1 | Chr10 | 15264853 | 15265191 | + | MSU_osa1r7 | ||
| CDS seq | ATGAACCAGCAGCTCGGCGACCTGCTGGAGACCGGGAAGGGCGCGGATGTGGTGTTTGAGGTTGCCGGCCAGACATTCGCGGCGCGGTCGCCGGTCTTCAGCGTGGAGCTCTACGGTCCGATGAAGGAGAGCGAACCCACCGGGGTCGTGTGCGTCCAAGACATGGAGGCGCAGGTGTTCAAAGCGTTGCTCCGCTTCATGTACACCGACTCGTTGCCGAAGATGGAGGAGGAGGAAGGCGTCATGTGCCAGCATCTGCTCGTTGCGGCGGATCGGTACAACCTGGAGAGGCTCAAGCTGATCTGCGAGGAGAAGCTGTGCAAGGGGAAACTATTTTAA
More
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| Protein seq | MNQQLGDLLETGKGADVVFEVAGQTFAARSPVFSVELYGPMKESEPTGVVCVQDMEAQVFKALLRFMYTDSLPKMEEEEGVMCQHLLVAADRYNLERLKLICEEKLCKGKLF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0427300 | SBH | 0.402729 | 0.097866 | 0.437796 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g29310 | RBH | 0.0 | 0.228958 | 0.417693 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0427300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011380 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011730 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011430 | RBH | 0.165951 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011690 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011520 | SBH | 0.593473 | 0.980439 | 1.809556 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0255600 | SBH | 0 | 0.0058225 | 0.033355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011570 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0274800 | SBH | 0.0075605 | 0 | 0.00571 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011330 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011280 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011730 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011200 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011770 | RBH | 0.067045 | 0.393717 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011540 | SBH | 0.0 | 0.885885 | 1.323118 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011610 | SBH | 0.0 | 0.0 | 0.494995 |
