Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g29070 | OGI:10049230 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:15143710-15146040 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACTCCGGATCAACAGCACCATCATCTTTGGTAAGGCAAATTTCCGCCAATGCGTCTTCCACTGCATCGGCAAGCTCTTGATCATCTAGACGGTGTTGTGTTCGTTCATCTGCTTTCATCCAGTCTTTAAGACAAAAGATTGACTCAACCGTCTCGGGTGTTAGGCATGACCTTCGTTCTTCAATAATTCTTCCAGTAGCGCTGAATGCTTGCTCGGAAGAAACGGAGGAGGCCGGAACCAGAAGAATATCTCGAGCAAAGTGAGCTAACATAGGAAGAGTTCGCTCTTTCTCTTTCCACCACCCAAGGAGATCGACATCGTCGCCATCAAGCGTCGGATCATGCTCAGTATGATCGGTGACGAGGTAGTGGTTAAGCTCTGAATCCGGGTTCCATGTTGATTTGTTCTGTGAGGATGGAGAGGCTTGGTCCTTGCCTGTATGCTGCTTCCACAAATTTAGTGCACTTGACTTGCTTGCTTTCTTTTGTGAGGTCTGCTCAGGAACTCGGGGAGTACCACCAAGCTTGGTTCGGTACAGACGGAAAACCCTATAGAGCTCATTATTGACATGTTGAAAAGCTTCAGAATAATCAAGCCCCACTGCATCACCTATTGAGTTCATGGCAACCTTGGCAATTTCCAACTTTTTGCGAGGATCAAGTATCAAAGCAAAGCAATAAAGGTGAGGTATAGCGGTGAAGTATTTGAGAAATTTTTCTTCCATGGGTTTAACAATGGAAGACAGAATACGATCAGACCGGTTTTCATCCAAAACAAGTGCCAGCTTCCAAATCCACTCAAGCACCAAACAAGATGTAGGATAGTAAATTCCTGATAATTGAACTGTAGCATTATAAAAGGGCTTCAGAAATTTACGCACACGTGTAGCAATCTCCCAATCCTGATCGGTGAGAATCAAAATCTCACCATCACCGTCGTCATCGGTATCCTTCATTCTGACATGCATCGAATTGATGAAAATAGAAATTAACTCCTCATACCCTTTTAATTGTCGCAGCAACAGGTATGTTGTGTTCCACCTATGTTTGACATCAATGCCAAACATCCGTCCAGGTTTATTCTTCACAATGCCAAACATCCGTCCAGGTTTATTCTTCGCTTTACAGTAGTCTTGGAACCTCGCTTTGACCACTGTGTTACCTCCTATGATACGAACAGAACGGCGAATTTTGTTTAACAATTTATCCAGAACAATCATGCCTGCAAAAAAATAGGTCGCATATATTAAAATAAATAAGCAATATGCCGCATACACTAAAATCAATAAATTATTAATAACATTAGTACCTGGTTGAACGATGAGATTGATGACGTGACAAATGCATCTCTGATGAATGACAAAGCCTCCAACATAACTTCTTAGATCCGGCTCCAAAATCGACATGGCCGTTGTGTTTGCTGATGCATTGTCAAGAGTAATGGAAACAACCCTAGATTGTAAATTGATTTCTCTCAATACCTCTAGGATTATCGTGGCTATGGCATCTCCCGTGTGTGACGTCATGAGTTTGAACCCTATGACTCTCTTATTCAACGACCGATTGTTGTCAAGATAATGAAGAACAACACTAAGATAAGATGTTCTTTGGTGTTGGGATGTCCAGATGTCCGATGTCACAGCAAATGAAAAACTAGTAGTACTCAAAGTTTGCTTCAACACACTCAACTTAGAACGATATATAGCTGTAATATCGTTCTTGGTGGTTTTCCTAGAAACTTTTTTGTACTGTGGGCAAAAAGCTTTTTGGATCATTCTCTCAAAATGTTTGCTTTCCCCCATTCTAATTGGTAGATCCTCAGCAACAATAAACTTAGCAATCTCTTCTCTAGCTATTTTTGAATCATAGGTCCATGTACTTACTGAACCGTCAGGGCCGAAGGACAAATGTGTCTGTCTTGCTCCTGCCGGCGCCTTGTTCTTGAGATGCGCCAAGTAATGCCGGTTGAGATGGCCTGTCCCTGAAGAAGTAGCTGCAGACAAAATTTTTTCGCAATATTTGCATTGAGCACGAGGTATACTTTTACCGTCAACCATCTCGGTGAATAATTCGAAGTGTCGCCAACACTCCGCTCTTCTGGCAGATGGCTGGTTATCGGAATTTGGTGTGGGCAACGTCGTGGCGTCGACGTCGACGGAGAAGTTGGCCTCGCCAGGAGATGGCTGATCACCGTCATCGCCCTCCAGACCATCCATGTGGCGATCATCCATCCCGTAGTCGTCCATGCCCGGGGATAGCTGCCGGGCATCGACCGACCTCTGGTATGGACCGGTTGTCGACTCGTGTTGACGCTTTTTGGACCTCCGCAT
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| CDS seq | ATGCGGAGGTCCAAAAAGCGTCAACACGAGTCGACAACCGGTCCATACCAGAGGTCGGTCGATGCCCGGCAGCTATCCCCGGGCATGGACGACTACGGGATGGATGATCGCCACATGGATGGTCTGGAGGGCGATGACGGTGATCAGCCATCTCCTGGCGAGGCCAACTTCTCCGTCGACGTCGACGCCACGACGTTGCCCACACCAAATTCCGATAACCAGCCATCTGCCAGAAGAGCGGAGTGTTGGCGACACTTCGAATTATTCACCGAGATGGTTGACGGTAAAAGTATACCTCGTGCTCAATGCAAATATTGCGAAAAAATTTTGTCTGCAGCTACTTCTTCAGGGACAGGCCATCTCAACCGGCATTACTTGGCGCATCTCAAGAACAAGGCGCCGGCAGGAGCAAGACAGACACATTTGTCCTTCGGCCCTGACGGTTCAGTAAGTACATGGACCTATGATTCAAAAATAGCTAGAGAAGAGATTGCTAAGTTTATTGTTGCTGAGGATCTACCAATTAGAATGGGGGAAAGCAAACATTTTGAGAGAATGATCCAAAAAGCTTTTTGCCCACAGTACAAAAAAGTTTCTAGGAAAACCACCAAGAACGATATTACAGCTATATATCGTTCTAAGTTGAGTGTGTTGAAGCAAACTTTGAGTACTACTAGTTTTTCATTTGCTGTGACATCGGACATCTGGACATCCCAACACCAAAGAACATCTTATCTTAGTGTTGTTCTTCATTATCTTGACAACAATCGGTCGTTGAATAAGAGAGTCATAGGGTTCAAACTCATGACGTCACACACGGGAGATGCCATAGCCACGATAATCCTAGAGGTATTGAGAGAAATCAATTTACAATCTAGGGTTGTTTCCATTACTCTTGACAATGCATCAGCAAACACAACGGCCATGTCGATTTTGGAGCCGGATCTAAGAAGTTATGTTGGAGGCTTTGTCATTCATCAGAGATGCATTTGTCACGTCATCAATCTCATCGTTCAACCAGGCATGATTGTTCTGGATAAATTGTTAAACAAAATTCGCCGTTCTGTTCGTATCATAGGAGGTAACACAGTGGTCAAAGCGAGGTTCCAAGACTACTGTAAAGCGAAGAATAAACCTGGACGGATGTTTGGCATTGTGAAGAATAAACCTGGACGGATGTTTGGCATTGATGTCAAACATAGGTGGAACACAACATACCTGTTGCTGCGACAATTAAAAGGGTATGAGGAGTTAATTTCTATTTTCATCAATTCGATGCATGTCAGAATGAAGGATACCGATGACGACGGTGATGGTGAGATTTTGATTCTCACCGATCAGGATTGGGAGATTGCTACACGTGTGCGTAAATTTCTGAAGCCCTTTTATAATGCTACAGTTCAATTATCAGGAATTTACTATCCTACATCTTGTTTGGTGCTTGAGTGGATTTGGAAGCTGGCACTTGTTTTGGATGAAAACCGGTCTGATCGTATTCTGTCTTCCATTGTTAAACCCATGGAAGAAAAATTTCTCAAATACTTCACCGCTATACCTCACCTTTATTGCTTTGCTTTGATACTTGATCCTCGCAAAAAGTTGGAAATTGCCAAGGTTGCCATGAACTCAATAGGTGATGCAGTGGGGCTTGATTATTCTGAAGCTTTTCAACATGTCAATAATGAGCTCTATAGGGTTTTCCGTCTGTACCGAACCAAGCTTGGTGGTACTCCCCGAGTTCCTGAGCAGACCTCACAAAAGAAAGCAAGCAAGTCAAGTGCACTAAATTTGTGGAAGCAGCATACAGGCAAGGACCAAGCCTCTCCATCCTCACAGAACAAATCAACATGGAACCCGGATTCAGAGCTTAACCACTACCTCGTCACCGATCATACTGAGCATGATCCGACGCTTGATGGCGACGATGTCGATCTCCTTGGGTGGTGGAAAGAGAAAGAGCGAACTCTTCCTATGTTAGCTCACTTTGCTCGAGATATTCTTCTGGTTCCGGCCTCCTCCGTTTCTTCCGAGCAAGCATTCAGCGCTACTGGAAGAATTATTGAAGAACGAAGGTCATGCCTAACACCCGAGACGGTTGAGTCAATCTTTTGTCTTAAAGACTGGATGAAAGCAGATGAACGAACACAACACCGTCTAGATGATCAAGAGCTTGCCGATGCAGTGGAAGACGCATTGGCGGAAATTTGCCTTACCAAAGATGATGGTGCTGTTGATCCGGAGTAA
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| Protein seq | MRRSKKRQHESTTGPYQRSVDARQLSPGMDDYGMDDRHMDGLEGDDGDQPSPGEANFSVDVDATTLPTPNSDNQPSARRAECWRHFELFTEMVDGKSIPRAQCKYCEKILSAATSSGTGHLNRHYLAHLKNKAPAGARQTHLSFGPDGSVSTWTYDSKIAREEIAKFIVAEDLPIRMGESKHFERMIQKAFCPQYKKVSRKTTKNDITAIYRSKLSVLKQTLSTTSFSFAVTSDIWTSQHQRTSYLSVVLHYLDNNRSLNKRVIGFKLMTSHTGDAIATIILEVLREINLQSRVVSITLDNASANTTAMSILEPDLRSYVGGFVIHQRCICHVINLIVQPGMIVLDKLLNKIRRSVRIIGGNTVVKARFQDYCKAKNKPGRMFGIVKNKPGRMFGIDVKHRWNTTYLLLRQLKGYEELISIFINSMHVRMKDTDDDGDGEILILTDQDWEIATRVRKFLKPFYNATVQLSGIYYPTSCLVLEWIWKLALVLDENRSDRILSSIVKPMEEKFLKYFTAIPHLYCFALILDPRKKLEIAKVAMNSIGDAVGLDYSEAFQHVNNELYRVFRLYRTKLGGTPRVPEQTSQKKASKSSALNLWKQHTGKDQASPSSQNKSTWNPDSELNHYLVTDHTEHDPTLDGDDVDLLGWWKEKERTLPMLAHFARDILLVPASSVSSEQAFSATGRIIEERRSCLTPETVESIFCLKDWMKADERTQHRLDDQELADAVEDALAEICLTKDDGAVDPE |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g29070 | LOC_Os10g29070.1 | Chr10 | 15143710 | 15146040 | - | MSU_osa1r7 | ||
| CDS seq | ATGCGGAGGTCCAAAAAGCGTCAACACGAGTCGACAACCGGTCCATACCAGAGGTCGGTCGATGCCCGGCAGCTATCCCCGGGCATGGACGACTACGGGATGGATGATCGCCACATGGATGGTCTGGAGGGCGATGACGGTGATCAGCCATCTCCTGGCGAGGCCAACTTCTCCGTCGACGTCGACGCCACGACGTTGCCCACACCAAATTCCGATAACCAGCCATCTGCCAGAAGAGCGGAGTGTTGGCGACACTTCGAATTATTCACCGAGATGGTTGACGGTAAAAGTATACCTCGTGCTCAATGCAAATATTGCGAAAAAATTTTGTCTGCAGCTACTTCTTCAGGGACAGGCCATCTCAACCGGCATTACTTGGCGCATCTCAAGAACAAGGCGCCGGCAGGAGCAAGACAGACACATTTGTCCTTCGGCCCTGACGGTTCAGTAAGTACATGGACCTATGATTCAAAAATAGCTAGAGAAGAGATTGCTAAGTTTATTGTTGCTGAGGATCTACCAATTAGAATGGGGGAAAGCAAACATTTTGAGAGAATGATCCAAAAAGCTTTTTGCCCACAGTACAAAAAAGTTTCTAGGAAAACCACCAAGAACGATATTACAGCTATATATCGTTCTAAGTTGAGTGTGTTGAAGCAAACTTTGAGTACTACTAGTTTTTCATTTGCTGTGACATCGGACATCTGGACATCCCAACACCAAAGAACATCTTATCTTAGTGTTGTTCTTCATTATCTTGACAACAATCGGTCGTTGAATAAGAGAGTCATAGGGTTCAAACTCATGACGTCACACACGGGAGATGCCATAGCCACGATAATCCTAGAGGTATTGAGAGAAATCAATTTACAATCTAGGGTTGTTTCCATTACTCTTGACAATGCATCAGCAAACACAACGGCCATGTCGATTTTGGAGCCGGATCTAAGAAGTTATGTTGGAGGCTTTGTCATTCATCAGAGATGCATTTGTCACGTCATCAATCTCATCGTTCAACCAGGCATGATTGTTCTGGATAAATTGTTAAACAAAATTCGCCGTTCTGTTCGTATCATAGGAGGTAACACAGTGGTCAAAGCGAGGTTCCAAGACTACTGTAAAGCGAAGAATAAACCTGGACGGATGTTTGGCATTGTGAAGAATAAACCTGGACGGATGTTTGGCATTGATGTCAAACATAGGTGGAACACAACATACCTGTTGCTGCGACAATTAAAAGGGTATGAGGAGTTAATTTCTATTTTCATCAATTCGATGCATGTCAGAATGAAGGATACCGATGACGACGGTGATGGTGAGATTTTGATTCTCACCGATCAGGATTGGGAGATTGCTACACGTGTGCGTAAATTTCTGAAGCCCTTTTATAATGCTACAGTTCAATTATCAGGAATTTACTATCCTACATCTTGTTTGGTGCTTGAGTGGATTTGGAAGCTGGCACTTGTTTTGGATGAAAACCGGTCTGATCGTATTCTGTCTTCCATTGTTAAACCCATGGAAGAAAAATTTCTCAAATACTTCACCGCTATACCTCACCTTTATTGCTTTGCTTTGATACTTGATCCTCGCAAAAAGTTGGAAATTGCCAAGGTTGCCATGAACTCAATAGGTGATGCAGTGGGGCTTGATTATTCTGAAGCTTTTCAACATGTCAATAATGAGCTCTATAGGGTTTTCCGTCTGTACCGAACCAAGCTTGGTGGTACTCCCCGAGTTCCTGAGCAGACCTCACAAAAGAAAGCAAGCAAGTCAAGTGCACTAAATTTGTGGAAGCAGCATACAGGCAAGGACCAAGCCTCTCCATCCTCACAGAACAAATCAACATGGAACCCGGATTCAGAGCTTAACCACTACCTCGTCACCGATCATACTGAGCATGATCCGACGCTTGATGGCGACGATGTCGATCTCCTTGGGTGGTGGAAAGAGAAAGAGCGAACTCTTCCTATGTTAGCTCACTTTGCTCGAGATATTCTTCTGGTTCCGGCCTCCTCCGTTTCTTCCGAGCAAGCATTCAGCGCTACTGGAAGAATTATTGAAGAACGAAGGTCATGCCTAACACCCGAGACGGTTGAGTCAATCTTTTGTCTTAAAGACTGGATGAAAGCAGATGAACGAACACAACACCGTCTAGATGATCAAGAGCTTGCCGATGCAGTGGAAGACGCATTGGCGGAAATTTGCCTTACCAAAGATGATGGTGCTGTTGATCCGGAGTAA
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| Protein seq | MRRSKKRQHESTTGPYQRSVDARQLSPGMDDYGMDDRHMDGLEGDDGDQPSPGEANFSVDVDATTLPTPNSDNQPSARRAECWRHFELFTEMVDGKSIPRAQCKYCEKILSAATSSGTGHLNRHYLAHLKNKAPAGARQTHLSFGPDGSVSTWTYDSKIAREEIAKFIVAEDLPIRMGESKHFERMIQKAFCPQYKKVSRKTTKNDITAIYRSKLSVLKQTLSTTSFSFAVTSDIWTSQHQRTSYLSVVLHYLDNNRSLNKRVIGFKLMTSHTGDAIATIILEVLREINLQSRVVSITLDNASANTTAMSILEPDLRSYVGGFVIHQRCICHVINLIVQPGMIVLDKLLNKIRRSVRIIGGNTVVKARFQDYCKAKNKPGRMFGIVKNKPGRMFGIDVKHRWNTTYLLLRQLKGYEELISIFINSMHVRMKDTDDDGDGEILILTDQDWEIATRVRKFLKPFYNATVQLSGIYYPTSCLVLEWIWKLALVLDENRSDRILSSIVKPMEEKFLKYFTAIPHLYCFALILDPRKKLEIAKVAMNSIGDAVGLDYSEAFQHVNNELYRVFRLYRTKLGGTPRVPEQTSQKKASKSSALNLWKQHTGKDQASPSSQNKSTWNPDSELNHYLVTDHTEHDPTLDGDDVDLLGWWKEKERTLPMLAHFARDILLVPASSVSSEQAFSATGRIIEERRSCLTPETVESIFCLKDWMKADERTQHRLDDQELADAVEDALAEICLTKDDGAVDPE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0426100 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g16470 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0426100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008690 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008800 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008800 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008630 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008500 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0339100 | SBH | 0.062607 | 0.168786 | 0.3117285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008400 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008680 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008570 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008560 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008730 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009050 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008410 | SBH | 0.0 | 0.0 | 0.0 |
