Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g28870 | OGI:10049310 | 4/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:15047485-15048642 | ||||||||
| Gene Symbol | OsSTA244 | ||||||||||
| DNA seq | ATGTCGTCGTCGTCATCAACATCTTCTACCGGCAACAACAACGGCGGCATCCCTTCACGCTCATCGTCATCTTCGTCGGCGATCGTGGTGAGCAAGGTGAGCGGGTGCCATTTTCTCAATATCGACGGCTACTCGCACACCAAGGAGATGCTCTCCCATGGCCACTGCTCCAGATCGTGCACCTTTCGCGTCGGAACGCATTCTTGGTACCTCGAGTACTACCCCAACGGCAGGTCCTTCTTGCACAACGCCAGCGACCACATGGCCATCTGCCTCGTCCGCGACGACGACGGCGACGCCGGCGACGGCGGCGCGTACGAGCAGATGACGGCTCGGTTCCACCTGCTCGACCACCACGCCGGGAAGCCGGTGCCCGGGCACACCCGCGGCGTCACGTCGCCGCTGCTGAGCGGCAAGATATGGGAGTGCTCCAACTTGGTCACGAGGAAGGAGCTGGAGGAGCACGTCCTCGACGGCGACTGCCTCGCGGTCAGGTGCGACATCACCATCGTCACGGTTCCCCGTCGTGCTGCACCGGCACCGGCGGTCGTCGTCGACGTGCCGGCTGCTGCTCCGGATCTGCAAAGCCAGATGGGCGCCCTCCTCCTGAGCAAGGAGGGCGCGGACGTGACGCTCCAGGTGGGCGGCGGCGAGACGACGACGTTCGCCGCCCGGTTGTTGGTGTTCAGGTCGGAGCTCTTCAGCGCCACCGCCACCTCCAAAGCCGGCAGCGGCGGGCGGGTGCACGTCGTCGACGACGGCATCGACGCGCGGGCCTTCGAGGCTCTGCTCCGGTTCATATACACGGACGCGCCGCCGGAGCTCGACGAAGAAGACGACGACTTCTCCTCCATGGCTTGGCTCCTCGTCGCGGCGGATCGGTACAAGGTAGAGCGGCTGAAGATGATCTGCGAGAACGAGCTGTGCAAGCGGATCGACGGGAACAACTTCGAGGCCACGCTGGCTTTGGCTGAGCAGCATCACTGCTCTTGCCCATGGTTCAATCTTTCGTTTTCGGCATTTGTATCGGAGGGTGCCGACATACCGAAATTTCAGAAATTTCGAAAATTTCGGTTCGAATTTTCCAAAATTTTGAACAAATTTTGGTCAAATTTAAACAAAATATTGCCAAATGCACAAAAAAATGAAAAAAATTAA
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| CDS seq | ATGTCGTCGTCGTCATCAACATCTTCTACCGGCAACAACAACGGCGGCATCCCTTCACGCTCATCGTCATCTTCGTCGGCGATCGTGGTGAGCAAGGTGAGCGGGTGCCATTTTCTCAATATCGACGGCTACTCGCACACCAAGGAGATGCTCTCCCATGGCCACTGCTCCAGATCGTGCACCTTTCGCGTCGGAACGCATTCTTGGTACCTCGAGTACTACCCCAACGGCAGGTCCTTCTTGCACAACGCCAGCGACCACATGGCCATCTGCCTCGTCCGCGACGACGACGGCGACGCCGGCGACGGCGGCGCGTACGAGCAGATGACGGCTCGGTTCCACCTGCTCGACCACCACGCCGGGAAGCCGGTGCCCGGGCACACCCGCGGCGTCACGTCGCCGCTGCTGAGCGGCAAGATATGGGAGTGCTCCAACTTGGTCACGAGGAAGGAGCTGGAGGAGCACGTCCTCGACGGCGACTGCCTCGCGGTCAGGTGCGACATCACCATCGTCACGGTTCCCCGTCGTGCTGCACCGGCACCGGCGGTCGTCGTCGACGTGCCGGCTGCTGCTCCGGATCTGCAAAGCCAGATGGGCGCCCTCCTCCTGAGCAAGGAGGGCGCGGACGTGACGCTCCAGGTGGGCGGCGGCGAGACGACGACGTTCGCCGCCCGGTTGTTGGTGTTCAGGTCGGAGCTCTTCAGCGCCACCGCCACCTCCAAAGCCGGCAGCGGCGGGCGGGTGCACGTCGTCGACGACGGCATCGACGCGCGGGCCTTCGAGGCTCTGCTCCGGTTCATATACACGGACGCGCCGCCGGAGCTCGACGAAGAAGACGACGACTTCTCCTCCATGGCTTGGCTCCTCGTCGCGGCGGATCGGTACAAGGTAGAGCGGCTGAAGATGATCTGCGAGAACGAGCTGTGCAAGCGGATCGACGGGAACAACTTCGAGGCCACGCTGGCTTTGGCTGAGCAGCATCACTGCTCTTGCCCATGGTTCAATCTTTCGTTTTCGGCATTTGTATCGGAGGGTGCCGACATACCGAAATTTCAGAAATTTCGAAAATTTCGGTTCGAATTTTCCAAAATTTTGAACAAATTTTGGTCAAATTTAAACAAAATATTGCCAAATGCACAAAAAAATGAAAAAAATTAA
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| Protein seq | MSSSSSTSSTGNNNGGIPSRSSSSSSAIVVSKVSGCHFLNIDGYSHTKEMLSHGHCSRSCTFRVGTHSWYLEYYPNGRSFLHNASDHMAICLVRDDDGDAGDGGAYEQMTARFHLLDHHAGKPVPGHTRGVTSPLLSGKIWECSNLVTRKELEEHVLDGDCLAVRCDITIVTVPRRAAPAPAVVVDVPAAAPDLQSQMGALLLSKEGADVTLQVGGGETTTFAARLLVFRSELFSATATSKAGSGGRVHVVDDGIDARAFEALLRFIYTDAPPELDEEDDDFSSMAWLLVAADRYKVERLKMICENELCKRIDGNNFEATLALAEQHHCSCPWFNLSFSAFVSEGADIPKFQKFRKFRFEFSKILNKFWSNLNKILPNAQKNEKN |
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| Function | BTB/POZ and MATH domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9M8J9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g28870 | LOC_Os10g28870.1 | Chr10 | 15047485 | 15048642 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGTCGTCGTCATCAACATCTTCTACCGGCAACAACAACGGCGGCATCCCTTCACGCTCATCGTCATCTTCGTCGGCGATCGTGGTGAGCAAGGTGAGCGGGTGCCATTTTCTCAATATCGACGGCTACTCGCACACCAAGGAGATGCTCTCCCATGGCCACTGCTCCAGATCGTGCACCTTTCGCGTCGGAACGCATTCTTGGTACCTCGAGTACTACCCCAACGGCAGGTCCTTCTTGCACAACGCCAGCGACCACATGGCCATCTGCCTCGTCCGCGACGACGACGGCGACGCCGGCGACGGCGGCGCGTACGAGCAGATGACGGCTCGGTTCCACCTGCTCGACCACCACGCCGGGAAGCCGGTGCCCGGGCACACCCGCGGCGTCACGTCGCCGCTGCTGAGCGGCAAGATATGGGAGTGCTCCAACTTGGTCACGAGGAAGGAGCTGGAGGAGCACGTCCTCGACGGCGACTGCCTCGCGGTCAGGTGCGACATCACCATCGTCACGGTTCCCCGTCGTGCTGCACCGGCACCGGCGGTCGTCGTCGACGTGCCGGCTGCTGCTCCGGATCTGCAAAGCCAGATGGGCGCCCTCCTCCTGAGCAAGGAGGGCGCGGACGTGACGCTCCAGGTGGGCGGCGGCGAGACGACGACGTTCGCCGCCCGGTTGTTGGTGTTCAGGTCGGAGCTCTTCAGCGCCACCGCCACCTCCAAAGCCGGCAGCGGCGGGCGGGTGCACGTCGTCGACGACGGCATCGACGCGCGGGCCTTCGAGGCTCTGCTCCGGTTCATATACACGGACGCGCCGCCGGAGCTCGACGAAGAAGACGACGACTTCTCCTCCATGGCTTGGCTCCTCGTCGCGGCGGATCGGTACAAGGTAGAGCGGCTGAAGATGATCTGCGAGAACGAGCTGTGCAAGCGGATCGACGGGAACAACTTCGAGGCCACGCTGGCTTTGGCTGAGCAGCATCACTGCTCTTGCCCATGGTTCAATCTTTCGTTTTCGGCATTTGTATCGGAGGGTGCCGACATACCGAAATTTCAGAAATTTCGAAAATTTCGGTTCGAATTTTCCAAAATTTTGAACAAATTTTGGTCAAATTTAAACAAAATATTGCCAAATGCACAAAAAAATGAAAAAAATTAA
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| Protein seq | MSSSSSTSSTGNNNGGIPSRSSSSSSAIVVSKVSGCHFLNIDGYSHTKEMLSHGHCSRSCTFRVGTHSWYLEYYPNGRSFLHNASDHMAICLVRDDDGDAGDGGAYEQMTARFHLLDHHAGKPVPGHTRGVTSPLLSGKIWECSNLVTRKELEEHVLDGDCLAVRCDITIVTVPRRAAPAPAVVVDVPAAAPDLQSQMGALLLSKEGADVTLQVGGGETTTFAARLLVFRSELFSATATSKAGSGGRVHVVDDGIDARAFEALLRFIYTDAPPELDEEDDDFSSMAWLLVAADRYKVERLKMICENELCKRIDGNNFEATLALAEQHHCSCPWFNLSFSAFVSEGADIPKFQKFRKFRFEFSKILNKFWSNLNKILPNAQKNEKN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.074121 | 0.0 | 0.132648 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0425400 | SBH | 0.0 | 0.396449 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0425400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011230 | SBH | 0.0 | 0.0 | 0.159188 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011520 | SBH | 0.0 | 0.258635 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011210 | RBH | 0.0 | 0.0 | 0.481876 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011600 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011440 | SBH | 0.849760 | 0.884164 | 4.851959 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0253500 | RBH | 0.711235 | 0.1526705 | 0.3914755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011470 | SBH | 0.000000 | 0.022633 | 0.055922 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0272400 | RBH | 0.30834 | 0.2196035 | 0.5088155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011230 | SBH | 0.0 | 0.016804 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011180 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011610 | SBH | 0.335668 | 0.899718 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011180 | SBH | 0.000000 | 0.0 | 0.168338 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011680 | SBH | 0.016631 | 0.372908 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011540 | SBH | 0.0 | 0.885885 | 1.323118 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011470 | SBH | 0.0 | 0.0 | 7.660278 |
