Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g26520 | OGI:10045560 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:13823476-13829535 | ||||||||
| Gene Symbol | RLCK299, OsRLCK299 | ||||||||||
| DNA seq | ATAAAAAATTCCTAATATTTTGAGACGCTCCATCATCATCTAAAGTAGATGATAAAAAGCAAACTAGAAATTTAAAAAATAAAAACAACCTTTTCGGCTTTTCCTAGTACTAGCTCCCAAATCCACACTCCCATCCAGTGCGGAACTGCAAAAGCCAGCGGGCCCCACCTGCCAGCGACCCACCGGCCACCACCTCGCACTCTCCGTCTCCTCCGCTGCGCCCCCAACACGGCGCCTACTACTCCTACAACAGAAGACGAGCTCGCCTCGCCGCCGCCGCCATCGCCACCACCACCCGCAGCTCTCCTCGTCGCGTCGTCCCGCACCTCTCGATCTCCAACGACGCGGGGGCTTGCCGGCGCGGCGCGAGTTGACGACGACTCGCCGGCTGTAGCAGGCAGCAGCAGCAGTAGAGAGACGAGACAGGAGTGAGTGGTGATCGCCGCGGTTGGGTTTCTTGGATTGGGCTGTGGCTGGCGTTGGTCGGAGGAGCCAGGAGGAGGTTCCCTCTCGCTTTGCTCGCTCGCTCGTTCGTTCTTGGCTGGGTTTGGTTTGGTTTGGTTTGGTCTCGGTTCAGATCTTCTCTCCAAAGATTGGGATTCTGTTGGTAGGGGGGGGAGGGAAGCCATTTTCTTGTTTCGATGGACGCTCGGTAGATCGGTAGGTAGATGGGGAACTGCATGGACACCGCGGCGGCGGCGGCGGCGGCGCCGGATACCAACAACGCCGGTGAGTGATGCGCCCTCCTTCTTGGGGGTTGGTTGGGTTCCATTCCATTGTTGTGTGATTCGCTCCATACTTGTGAATTGAATGGCACAGACTTGGCTTCTTCTTGTTTCTATGTTTGCTATTGTTGAGTTTTGCTTCCCCTTTGGGTGGGTGCCCCCTCACTTTTGGCTCTCCCTTTTTTCCTTCCTAGTTTGGTTTGGTTGTCTATAGCATTTGGATTGTTATTGTTACATGGAAAAAGGGGTGAGAGTGGTGGGATTTCTAAATTTTTCTTTCTTTCTTTCCTACATTTCTAGAGTTTTGCTACTAGGGTTTAGTTACCTTGTTATTGATCTCAAGCCTCAGATGGTCTGGTTATGGCAAATGATACATATGCTTGGTATAATAATGATTGGATTTGGGGGGAAGTCTTGAAGTAATGTCTTGTTGTCGTAATAGTTATGAACCTTCTAACTTGTGTAGGAATATAAATCGTTTCCAATTAGCATTTGCTTTTCGAAAGGAGGTTTAATTTGTTCCTAGAGTAAGTATATTTGCGAGCTGATAGATACCGGATTTTGTGTTTACTGTTAGATGTTACACCTTCATACAGCCATTGCATATTGCTACCGCCTACCAGAGAGATGTTTTAAGTTTTGACACCTTAGGCTGAAGTATTTGCAAGAACGAAATCAGACATAATTGAACACACAATTGCATTGTGTTGCAACCAAGGTAATAAATACCGTTCTTAGCGTCCGCTATAGCGGTAGCTGACCTCTACCGCTAGCACTACAAGGTAGTGGATCAAATATAGCGTATTGGAATTTAGTGGCCGTTATAGCGCTTGGCAACCGTTATAGTAGTCTGCTATTGGCTTGTTGCGCTGCTATTGCTCTTAAATGATATTCTTCATGCATGGACAGGAGAACTTAATGCAGTGCGCCTTCTCTATATCTTACTTATTTTGTTATCTTATAATTTTTATGCTATGAAATGTATGAGTATCAAAGTATGTAACCTAAACTTATTTTAAGTGAAACTTGATGTTAGCATTCATATATAATCTAAAGTTATGGTTACTTTTTGAATTCCGCTATTGGAATTTAGTGCCTGCAATAGCAACCACTATCCACAATCAGCTACCCGTACACTAATCCGCTACCAACCCTCTATTTGCTAGTATTTATTACCTTGGTTACAAATAAATCGATTTATGCAACAGTTATCCTTATGTATATCTCTCTGTTTCTTGTCTGGAAAGCAGATCCATCAAAAGCTGCTAGCAAGACAACCTATTCATCTTACCCTTCAACTACAAAAAGCGGTTCATCTTGGACTGTACCTTCCTATAAGGATCGTAGCGACCTTCCTACTCCTAGGACAGAAGGAGAAATTTTATCATCGTCAAATTTAAAGGCATTCACACTGAGTGAACTCAAAAATGCAACAAAGAACTTTAAGCCCGACAGTCTCCTTGGGGAAGGAGGATTTGGCTATGTCTATAAAGGTTGGATCGATGAGCAAACTCTTGCTCCTGCAAGGCCAGGGAGTGGTATGGTTGTGGCCGTCAAAAAGTTAAAACCAGAAGGTTTTCAGGGTCACAAGGAGTGGCTGGTACGTCTGCTATAAACCAACTTTCTAGGTTTCTCTGAGGTGCTACAATGTTTCTTAATTGTGATTGATGTGCTGCAGACAGAGGTTGACTACCTTGGCCAACTTCACCATGAGAATCTTGTTAAACTCATTGGTTATTGTTCAGATGGTGATAACCGACTTCTGGTGTATGAGTACATGCCTAAAGGAAGCTTGGAGAATCATCTATTTAGGCGTATGCATTTAACTCTACCACACTATTTTCTAAATATATACGGGTTCAATATCTTAAATTTGGCAGCACATTAAATGGAATTTTCTGTTATTTTAGGTGGTGCAGATCCTTTATCCTGGGGAATAAGGCTCAAAGTTGCTATTGGGGCTGCTAGGGGTTTATCATTTTTGCACGATGCTGAAAATCAAGTTATATATCGTGATTTCAAGGCATCAAACATTCTCCTTGACTCGGTATACATGAAAATAGCTACTCATTCTTGTCCTTCGAAAGTTTGACCTTTTGCAAATGTTTTTACTTTAACTTTTGTTTCCTTTTTTCACCATTATAGGAGTTCAACGCAAAGCTTTCAGACTTTGGTCTGGCAAAAGCAGGCCCAACTGGGGATAGAACCCATGTTTCCACACAAGTCATGGGTACCCGAGGTTATGCAGCTCCAGAATATGTTGCAACAGGTCAGGAATGATCTTACTTTTGAGTTCATATAATTCACAAGTTGGTACAGATTTATTAAATGGCAGTCTGCTTACTACCCTTGATGTTGGTCACTTCTTCAAAATTATGTTCAATCAGCTAGAATTAGAGTAGTTTACAAAAAAGGAAAAGAAGCTAGAATTAGAGTGTTGTTAAACCACCTTGTTGGTGCTAAGCTTTTATTTTGGTGACATCTAAAATGTACAGTAGTTTTGAATTAACAAATCTTGTTTTGCCGTATCTATTTCACCAAATGACATGCTGACTGTTATTGTACTATGACCGATAGCAAATATTTGTGAAGATCCTTTATTTGAGTTATCATCATCTCATTGTCATATCTACTAATGTCATTTTCACACATCAAATCTTAATATTTATTTTAAATTTATTAGCAAACGAGGGATGGTTTAGAGCCAAGTGAATGCGTAGAAGATGAAGACATTTTCCCTTTCTTCTTCTGCCTTCTTTTTTTTTTCCCTTCTTGCCTGCCCTAATCTATCTGGTGGCATACTCAATCTGCTCAAAGCAGAGCTGACCAACTGAGAAAACCAATTGACGGAAGACCTGCTGCGCTAGCCGACATAGATTGAAGGAGCAGCGAGCAGCAACTCCTGTGCGTGGCACCACGCGGGAGGTGGAAGCAGACGCCCATGCATGAAGGAGCAAAGTGCCAAGCAGCACCGTGCGAAGGAAAGCAGTGGGTCTGCATGCGGCGGAAGCAGGAGTCCGTGCAAAGAAAAGCGGCGGGGCCCCACGAGGAAAATCACCCGGTGAAGAAAAATCGTCAGGCGATGAGAGAAGACAAGCAGCAAGGAGGAAAACTGGCGAAACCCTAGATCTAGGCTCTCATACCATGTTAGGAATATAGCTTGTATTGAATAATAGCCCCAAGGAGGCAATATATAGGAGTACAAGAGACCAAAATACGTAAAGAGATAAACTATATATGTAAATAAAAGACTATATTCCTTGACAGGCGGTAGTGCTTCCAGTTGAGAAGCCACCGGTCCTGGGTTCGAACCCAGGATTTGCACAGGGAAAAAAAAGGACTTCTCGTTGGCTATTCCGTATTAAATGTGTAATCACTACGGTTGCCTTCAGTAAAATGCATGTGACCCACATGCCCTGGGCACCCGGGTAGGCGGCCTTTGGGGCCTTTTCTCGACTGGGCCAGGAAGAGCTTCTTATATTTATCACTGAGTTAAGATTTTGAGGTTTAACTCCACGCATTCTAATATGTCATTTTTGGAGTGTGGTAAAGCTGCAAGTTTCCATTTTCTTTTTTTTATTATTTTGGACAAACATTAGGGAAGTCTTATGTGCATAAAGGGATTCTTTTATGCTACTTGAAATCACTGCAAGCCTGCATTTTTATCTGGAATGTATGTTGTTTTCTTGTTTAATACTATTACAAAATTTGTGTTATCCTGAAAAATTAAGTTCTGCAAACAAAACCCTGAATTTTAAATATAAATTTCTTTATTTGCACTTCAAAGAGAATCTATATTGATTTTTGCCTTTAGTTTGGACATTTAAAATGATTTACAACTTTTGCATTATATTTGGTTCCTACTTCATAACAATAACAAGTAACTGGAAGATACAATTGTCTTTGCTTCAAGTACAAAACAGACTTTGTACACATTACTTGCTCTGAATTTTGTAAGTCTCAATGTTTTATTGAAAATTGGAAACAAAATTCTGGATATTTGATTTTTACCGTGCATGAATCTAGCAGAAAACATATACTCCCTCCGTTTCTAAATATCTGACGCCGTTGACTTTTTTAAACATGTTTGACCATTCGTCTTATTTAAAAAAATAAGTAATTATTAATTCTTTTCCTATCATTTGATTCATTGTTAAATATACTTTCATGTATACATATAGTGTTTCATATTTCACAAAAAAAATTTAATAAGACAAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTAGAAACGGAGGGAGTATGATCTACTTGAAAAGAATAGTCATGCCATTAGGACTTGCTCTTGTTGGCTAATGTATCTGGTAGTGGTAGGAGATAGTATTATTGTTGGGGGGCACATGTCCTTCACCTCTTAGAGCGGTATGATGGGGCACTAATAAAATCCAATTGTAATTAACTGCTGAGATCTTCAGTTTATAAATTCTGTTGCAATTGTTTCTCACAATGCTCAAATATGATCCAGGTCGCCTCTCTGTAAAGGCAGATGTCTATAGCTTTGGTGTTGTGCTGCTCGAGTTATTGACTGGGAGACGGGCCTTAGACAAATCGAAACCAGCATCAGAACAGAACCTGGTTGACTGGACAAGACCCTACTTGGGTGACAAGCGCAGGCTGTACCGCATCATGGACATGAAGCTGGGCGGACAGTACCCTAAGAAAGGCGCCCACGCTATCGCGACCATTGCCCTGCAGTGCATCCGCAGCGAAGCCAAGATGCGACCCCAGATGTCCGAGGTCCTGGAGAAGCTGCAGCAGCTGCAAGACCCCAAGTACAACGTGACCTCACCGCAGGTTGACACCCGGAGGAGATCATCGTCGGGTTCAGTTCCTAGGTCGCCGATGCGGATGCAGCCTTCGCCACGGCGCCTTTCCGCCTCGGCTTCCCCATTGCCGGCTGCAGGCTCCCCGCTGCCGGCTTGTAGGACTGCGCAAGTGCACTAGATGCACAGCCTAGGATAGTTTGGAACTTCGTGCTGTAGTTGTTTGTAACCTCTAGCTGTATATTTTGTTTTGATGTTGTGCCCAATCTGTAGTTCTTTGTTTTGTGAGGTTGGATACATCTGTTGCTGTTAGACTCCGATGTGTGTGTAACAGGGAACGTGATTCCGGCATTCTGACGCGATCATTATTTTTTTTTACTTGTTTCAATAGATAAATGGATTCTTAGATTTGTGCCGTTGTGCATGGTTTTTCCTAGCCTTTGTTGGTTTAACCAATTACCTGTAGTTTGAATATTTATGACATGTACAAATATTTCTGGTGACATGACATCCATGAAATTCAAGAACCCTGCTTGTACT
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| CDS seq | ATGGGGAACTGCATGGACACCGCGGCGGCGGCGGCGGCGGCGCCGGATACCAACAACGCCGATCCATCAAAAGCTGCTAGCAAGACAACCTATTCATCTTACCCTTCAACTACAAAAAGCGGTTCATCTTGGACTGTACCTTCCTATAAGGATCGTAGCGACCTTCCTACTCCTAGGACAGAAGGAGAAATTTTATCATCGTCAAATTTAAAGGCATTCACACTGAGTGAACTCAAAAATGCAACAAAGAACTTTAAGCCCGACAGTCTCCTTGGGGAAGGAGGATTTGGCTATGTCTATAAAGGTTGGATCGATGAGCAAACTCTTGCTCCTGCAAGGCCAGGGAGTGGTATGGTTGTGGCCGTCAAAAAGTTAAAACCAGAAGGTTTTCAGGGTCACAAGGAGTGGCTGACAGAGGTTGACTACCTTGGCCAACTTCACCATGAGAATCTTGTTAAACTCATTGGTTATTGTTCAGATGGTGATAACCGACTTCTGGTGTATGAGTACATGCCTAAAGGAAGCTTGGAGAATCATCTATTTAGGCGTGGTGCAGATCCTTTATCCTGGGGAATAAGGCTCAAAGTTGCTATTGGGGCTGCTAGGGGTTTATCATTTTTGCACGATGCTGAAAATCAAGTTATATATCGTGATTTCAAGGCATCAAACATTCTCCTTGACTCGGAGTTCAACGCAAAGCTTTCAGACTTTGGTCTGGCAAAAGCAGGCCCAACTGGGGATAGAACCCATGTTTCCACACAAGTCATGGGTACCCGAGGTTATGCAGCTCCAGAATATGTTGCAACAGGTCGCCTCTCTGTAAAGGCAGATGTCTATAGCTTTGGTGTTGTGCTGCTCGAGTTATTGACTGGGAGACGGGCCTTAGACAAATCGAAACCAGCATCAGAACAGAACCTGGTTGACTGGACAAGACCCTACTTGGGTGACAAGCGCAGGCTGTACCGCATCATGGACATGAAGCTGGGCGGACAGTACCCTAAGAAAGGCGCCCACGCTATCGCGACCATTGCCCTGCAGTGCATCCGCAGCGAAGCCAAGATGCGACCCCAGATGTCCGAGGTCCTGGAGAAGCTGCAGCAGCTGCAAGACCCCAAGTACAACGTGACCTCACCGCAGGTTGACACCCGGAGGAGATCATCGTCGGGTTCAGTTCCTAGGTCGCCGATGCGGATGCAGCCTTCGCCACGGCGCCTTTCCGCCTCGGCTTCCCCATTGCCGGCTGCAGGCTCCCCGCTGCCGGCTTGTAGGACTGCGCAAGTGCACTAG
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| Protein seq | MGNCMDTAAAAAAAPDTNNADPSKAASKTTYSSYPSTTKSGSSWTVPSYKDRSDLPTPRTEGEILSSSNLKAFTLSELKNATKNFKPDSLLGEGGFGYVYKGWIDEQTLAPARPGSGMVVAVKKLKPEGFQGHKEWLTEVDYLGQLHHENLVKLIGYCSDGDNRLLVYEYMPKGSLENHLFRRGADPLSWGIRLKVAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTRGYAAPEYVATGRLSVKADVYSFGVVLLELLTGRRALDKSKPASEQNLVDWTRPYLGDKRRLYRIMDMKLGGQYPKKGAHAIATIALQCIRSEAKMRPQMSEVLEKLQQLQDPKYNVTSPQVDTRRRSSSGSVPRSPMRMQPSPRRLSASASPLPAAGSPLPACRTAQVH |
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| Function | Probable serine/threonine-protein kinase PBL3 [UniProtKB/Swiss-Prot:O49840] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g26520 | LOC_Os10g26520.1 | Chr10 | 13823476 | 13829535 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGGAACTGCATGGACACCGCGGCGGCGGCGGCGGCGGCGCCGGATACCAACAACGCCGATCCATCAAAAGCTGCTAGCAAGACAACCTATTCATCTTACCCTTCAACTACAAAAAGCGGTTCATCTTGGACTGTACCTTCCTATAAGGATCGTAGCGACCTTCCTACTCCTAGGACAGAAGGAGAAATTTTATCATCGTCAAATTTAAAGGCATTCACACTGAGTGAACTCAAAAATGCAACAAAGAACTTTAAGCCCGACAGTCTCCTTGGGGAAGGAGGATTTGGCTATGTCTATAAAGGTTGGATCGATGAGCAAACTCTTGCTCCTGCAAGGCCAGGGAGTGGTATGGTTGTGGCCGTCAAAAAGTTAAAACCAGAAGGTTTTCAGGGTCACAAGGAGTGGCTGACAGAGGTTGACTACCTTGGCCAACTTCACCATGAGAATCTTGTTAAACTCATTGGTTATTGTTCAGATGGTGATAACCGACTTCTGGTGTATGAGTACATGCCTAAAGGAAGCTTGGAGAATCATCTATTTAGGCGTGGTGCAGATCCTTTATCCTGGGGAATAAGGCTCAAAGTTGCTATTGGGGCTGCTAGGGGTTTATCATTTTTGCACGATGCTGAAAATCAAGTTATATATCGTGATTTCAAGGCATCAAACATTCTCCTTGACTCGGAGTTCAACGCAAAGCTTTCAGACTTTGGTCTGGCAAAAGCAGGCCCAACTGGGGATAGAACCCATGTTTCCACACAAGTCATGGGTACCCGAGGTTATGCAGCTCCAGAATATGTTGCAACAGGTCGCCTCTCTGTAAAGGCAGATGTCTATAGCTTTGGTGTTGTGCTGCTCGAGTTATTGACTGGGAGACGGGCCTTAGACAAATCGAAACCAGCATCAGAACAGAACCTGGTTGACTGGACAAGACCCTACTTGGGTGACAAGCGCAGGCTGTACCGCATCATGGACATGAAGCTGGGCGGACAGTACCCTAAGAAAGGCGCCCACGCTATCGCGACCATTGCCCTGCAGTGCATCCGCAGCGAAGCCAAGATGCGACCCCAGATGTCCGAGGTCCTGGAGAAGCTGCAGCAGCTGCAAGACCCCAAGTACAACGTGACCTCACCGCAGGTTGACACCCGGAGGAGATCATCGTCGGGTTCAGTTCCTAGGTCGCCGATGCGGATGCAGCCTTCGCCACGGCGCCTTTCCGCCTCGGCTTCCCCATTGCCGGCTGCAGGCTCCCCGCTGCCGGCTTGTAGGACTGCGCAAGTGCACTAG
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| Protein seq | MGNCMDTAAAAAAAPDTNNADPSKAASKTTYSSYPSTTKSGSSWTVPSYKDRSDLPTPRTEGEILSSSNLKAFTLSELKNATKNFKPDSLLGEGGFGYVYKGWIDEQTLAPARPGSGMVVAVKKLKPEGFQGHKEWLTEVDYLGQLHHENLVKLIGYCSDGDNRLLVYEYMPKGSLENHLFRRGADPLSWGIRLKVAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTRGYAAPEYVATGRLSVKADVYSFGVVLLELLTGRRALDKSKPASEQNLVDWTRPYLGDKRRLYRIMDMKLGGQYPKKGAHAIATIALQCIRSEAKMRPQMSEVLEKLQQLQDPKYNVTSPQVDTRRRSSSGSVPRSPMRMQPSPRRLSASASPLPAAGSPLPACRTAQVH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.340049 | 0.462109 | 1.027373 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0405100 | RBH | 0.723040 | 0.844639 | 5.095487 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g07430 | RBH | 1.784993 | 2.102728 | 1.441683 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0405100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0010060 | RBH | 0.129118 | 2.854501 | 6.126895 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0010150 | RBH | 0.122965 | 0.000000 | 1.746495 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0010020 | RBH | 0.817654 | 3.015502 | 7.039227 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0010380 | RBH | 0.136423 | 0.208418 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0010120 | RBH | 6.075679 | 14.814995 | 18.426510 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0227600 | SBH | 0.2594725 | 10.4776685 | 0.006079 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0010150 | RBH | 0.160343 | 0.543091 | 0.431647 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0256500 | RBH | 7.9315245 | 7.861752 | 21.664259 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0009930 | RBH | 0.070992 | 0.116499 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009910 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0010340 | RBH | 2.148278 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009940 | RBH | 0.839901 | 0.0 | 0.992653 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0010420 | RBH | 0.471323 | 6.231182 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G010250 | RBH | 0.225447 | 6.640237 | 2.887827 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0010210 | RBH | 0.730111 | 0.000000 | 3.479594 |
