Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g24050 | OGI:10041580 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:12320169-12321840 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCCCGGTGGTCGGACCGGGCCGGCACGGGCCTGACCCCTGACGGGCCGTGCCGTGCTTGGGCCAGGCCAAAACGCCGTGCCGTGGGCCGGGCCGTCGGGCCTCGGGCCTTTTGTCCATCTATACATGTAGGGAGGTGAGTGAAGTGTATTTGGCCGAGCTGTGCGGCAGAACGTGGCATGGGTTGAGGGTGAGCAGTTGCTCCAGTAGTGCATGGGTGTGCTTTTATAAGCATGTAATCAGTTTGTGTGTGTGAGATGAAAAATACAAGTGCATTGGTGCTGGTGTGCAGTGCCAAAACAAATACATCTCTTGTGCTTTCAGAATTTTTCTTGTGTGTTTTAGCCACAATATCGTGCGTGCGTTCTTAGTGTTTGGGCTAACAAAACACAGTATATGATGCATGACTACGCGAATGCGTAGGCTACCTTTCTAGTTAAATATAAATCATTCATTTTCCATGACTTACGAGTAGTTGTATGCACACTTTTTGCAATTGCAAGAGAAGCAGCTTTGCATGTTCATACATATATCAAATACATATAGCACCTATATTATGCGTCCTGCAGATCTTCTCTAGTTTCCCAATCAAATCCTCTGATGTCCAATCCAAGAAACCTGTCCATGAAGATGATGTTGGCTGGCGTTCCATCCCTCAACAACGATGATCACCGGCGGCGGGGGCATGGGAGAAGCGACCTGATCACCGTCAAGGTGATGGCCATTTTGCCTCTGCTGATCTCCACTCCAGCCCACTCCATCGGCGGTGTCGTCGACGACGACGACGATGTGGAGTATGTGGAGATAACATGCTACATCGACACGCAGCCATTCGACTACTGCTTCGAGCAAGCCTACCTGTTGCTGTCCGACAACGAACCACGCAAGACTGTACATGGTAATCACCCTGTCCTTGCACCCAAACGCAAAGGTCAGGATACTTTCACCGCTCCACCGAGGAAGTGGCTCAAGATGCATCTTGTCTGCCGGAAGCCTCGCATCGATAGGTGCACGATAGCCCTTAGATTCGATACCATATATCTGATGGCATTCAGCACTAATCAGAACCAGTGGTACAGCATGTACTCTGGGTTCCCAATTGCTCACACCAGACTCCCCTTTGATGAGGATTACTTTGCTCTTGCCGGGGGCACAAGTAATCTGGTTACTGTGCCATTGGGGAAAGAATCTGCGCTGGATGCAATACACACCCTTGCTACATTCGATGGAGAAAGTGCCAATGACTTGAAGATACCGCTGGTGAAGTTGAGGATAATGTTCTCTGAAGCCCTTAAGCTAAAGCCCGTGCGTTTGGCCTTTTCTAGAGATTGGAACGAGGAAACCCACATCACCAAACAAGACGCGAACTACATTGGATGTTGGGGCCTAATGTCATTCAATCTTGTAGCCTGGAAGAACTCTGGCTACGCGTACTGGAAAAGCGAGAAGAAATTGGAAAACTGCCTTGTGAACACCCCATGGAATGCCTCAGAAGTGGGCGATCTTCTCATGCGTCCAAATGACGAGGCGATCTGAACTGTTATATGTAATTCTACTTATATACATGTTTGCATGCATAATATTCTGTTTTAATTTATAAATGTCGTTAAGAATATATTGTAAGGCTTAATTTCTGTGATTGAAGTCTAATGCAAAGACCAAGTTTGTGTT
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| CDS seq | ATGGCCCGGTGGTCGGACCGGGCCGGCACGGGCCTGACCCCTGACGGGCCGTGCCGTGCTTGGGCCAGGCCAAAACGCCGTGCCGTGGGCCGGGCCGTCGGGCCTCGGGCCTTTTGTCCATCTATACATGTAGGGAGATCTTCTCTAGTTTCCCAATCAAATCCTCTGATGTCCAATCCAAGAAACCTGTCCATGAAGATGATGTTGGCTGGCGTTCCATCCCTCAACAACGATGATCACCGGCGGCGGGGGCATGGGAGAAGCGACCTGATCACCGTCAAGGTGATGGCCATTTTGCCTCTGCTGATCTCCACTCCAGCCCACTCCATCGGCGGTGTCGTCGACGACGACGACGATGTGGAGTATGTGGAGATAACATGCTACATCGACACGCAGCCATTCGACTACTGCTTCGAGCAAGCCTACCTGTTGCTGTCCGACAACGAACCACGCAAGACTGTACATGGTAATCACCCTGTCCTTGCACCCAAACGCAAAGGTCAGGATACTTTCACCGCTCCACCGAGGAAGTGGCTCAAGATGCATCTTGTCTGCCGGAAGCCTCGCATCGATAGGTGCACGATAGCCCTTAGATTCGATACCATATATCTGATGGCATTCAGCACTAATCAGAACCAGTGGTACAGCATGTACTCTGGGTTCCCAATTGCTCACACCAGACTCCCCTTTGATGAGGATTACTTTGCTCTTGCCGGGGGCACAAGTAATCTGGTTACTGTGCCATTGGGGAAAGAATCTGCGCTGGATGCAATACACACCCTTGCTACATTCGATGGAGAAAGTGCCAATGACTTGAAGATACCGCTGGTGAAGTTGAGGATAATGTTCTCTGAAGCCCTTAAGCTAAAGCCCGTGCGTTTGGCCTTTTCTAGAGATTGGAACGAGGAAACCCACATCACCAAACAAGACGCGAACTACATTGGATGTTGGGGCCTAATGTCATTCAATCTTGTAGCCTGGAAGAACTCTGGCTACGCGTACTGGAAAAGCGAGAAGAAATTGGAAAACTGCCTTGTGAACACCCCATGGAATGCCTCAGAAGTGGGCGATCTTCTCATGCGTCCAAATGACGAGGCGATCTGA
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| Protein seq | MARWSDRAGTGLTPDGPCRAWARPKRRAVGRAVGPRAFCPSIHVGRSSLVSQSNPLMSNPRNLSMKMMLAGVPSLNNDDHRRRGHGRSDLITVKVMAILPLLISTPAHSIGGVVDDDDDVEYVEITCYIDTQPFDYCFEQAYLLLSDNEPRKTVHGNHPVLAPKRKGQDTFTAPPRKWLKMHLVCRKPRIDRCTIALRFDTIYLMAFSTNQNQWYSMYSGFPIAHTRLPFDEDYFALAGGTSNLVTVPLGKESALDAIHTLATFDGESANDLKIPLVKLRIMFSEALKLKPVRLAFSRDWNEETHITKQDANYIGCWGLMSFNLVAWKNSGYAYWKSEKKLENCLVNTPWNASEVGDLLMRPNDEAI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g24050 | LOC_Os10g24050.1 | Chr10 | 12320169 | 12321840 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCCGGTGGTCGGACCGGGCCGGCACGGGCCTGACCCCTGACGGGCCGTGCCGTGCTTGGGCCAGGCCAAAACGCCGTGCCGTGGGCCGGGCCGTCGGGCCTCGGGCCTTTTGTCCATCTATACATGTAGGGAGATCTTCTCTAGTTTCCCAATCAAATCCTCTGATGTCCAATCCAAGAAACCTGTCCATGAAGATGATGTTGGCTGGCGTTCCATCCCTCAACAACGATGATCACCGGCGGCGGGGGCATGGGAGAAGCGACCTGATCACCGTCAAGGTGATGGCCATTTTGCCTCTGCTGATCTCCACTCCAGCCCACTCCATCGGCGGTGTCGTCGACGACGACGACGATGTGGAGTATGTGGAGATAACATGCTACATCGACACGCAGCCATTCGACTACTGCTTCGAGCAAGCCTACCTGTTGCTGTCCGACAACGAACCACGCAAGACTGTACATGGTAATCACCCTGTCCTTGCACCCAAACGCAAAGGTCAGGATACTTTCACCGCTCCACCGAGGAAGTGGCTCAAGATGCATCTTGTCTGCCGGAAGCCTCGCATCGATAGGTGCACGATAGCCCTTAGATTCGATACCATATATCTGATGGCATTCAGCACTAATCAGAACCAGTGGTACAGCATGTACTCTGGGTTCCCAATTGCTCACACCAGACTCCCCTTTGATGAGGATTACTTTGCTCTTGCCGGGGGCACAAGTAATCTGGTTACTGTGCCATTGGGGAAAGAATCTGCGCTGGATGCAATACACACCCTTGCTACATTCGATGGAGAAAGTGCCAATGACTTGAAGATACCGCTGGTGAAGTTGAGGATAATGTTCTCTGAAGCCCTTAAGCTAAAGCCCGTGCGTTTGGCCTTTTCTAGAGATTGGAACGAGGAAACCCACATCACCAAACAAGACGCGAACTACATTGGATGTTGGGGCCTAATGTCATTCAATCTTGTAGCCTGGAAGAACTCTGGCTACGCGTACTGGAAAAGCGAGAAGAAATTGGAAAACTGCCTTGTGAACACCCCATGGAATGCCTCAGAAGTGGGCGATCTTCTCATGCGTCCAAATGACGAGGCGATCTGA
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| Protein seq | MARWSDRAGTGLTPDGPCRAWARPKRRAVGRAVGPRAFCPSIHVGRSSLVSQSNPLMSNPRNLSMKMMLAGVPSLNNDDHRRRGHGRSDLITVKVMAILPLLISTPAHSIGGVVDDDDDVEYVEITCYIDTQPFDYCFEQAYLLLSDNEPRKTVHGNHPVLAPKRKGQDTFTAPPRKWLKMHLVCRKPRIDRCTIALRFDTIYLMAFSTNQNQWYSMYSGFPIAHTRLPFDEDYFALAGGTSNLVTVPLGKESALDAIHTLATFDGESANDLKIPLVKLRIMFSEALKLKPVRLAFSRDWNEETHITKQDANYIGCWGLMSFNLVAWKNSGYAYWKSEKKLENCLVNTPWNASEVGDLLMRPNDEAI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0382100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0382100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009000 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009090 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008930 | RBH | 0.297893 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009310 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009110 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0213900 | RBH | 0.7778105 | 1.3828575 | 0.8632505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0009040 | RBH | 0.031756 | 0.0 | 0.112862 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0229000 | SBH | 0.4177795 | 0.9842345 | 1.356665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0008860 | RBH | 0.075865 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0009240 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0008840 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009140 | RBH | 0.0 | 0.0 | 0.287281 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009130 | RBH | 0.0 | 0.0 | 0.0 |
