Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os10g21700		OGI:10035600 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr10:11124394-11128653		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		-
DNA seq		ATGAAGCTTACTATGAAGCTTTCCGTTGCCTTTGCCTTCTTCTTCTTCCTCGCGGCGACTACCACCGCCTTCGCGCAGTGCACGTTCGAGATCCTTGTCAAGACCGACGGCCGGTGGTACGCCGGCACCAACGCCCGCGTCTCACTGCAGGTACGCGCTGCCAGCGGGCCGACGCTGACGATCACCAACTTGGAGTCCTGGGGCCAGATGGCTGCCAGCCACGACTACTTCGAAAAGGGGAACCTCGACCGGTTCAGGGGCACCGGCGACTGCATGCCGTCGGAGCCCTGCAACATGGTGCTCACCTCCGACGGGTCCGGGAACATGCCCGGCTGGTACGTGAGCTACGTAATGGTGACGCAGCTCGGGCAGGGGAGCCTCCCGTCGATGACGCACCGGTGGGCGGTGGATCAGTGGTTGGCCATCGACGAGCCACCGCACATGCTCACTGCCGAGCGGAAGGGCTGCGGCATTGGCGCGGTGGTGCCATGATCATCGAGGTAGCTGCCTAGCTAGTTCCATCTATCAGTGTTGTCTCTGCGTGCATCAGCATGCTATATAGTAACTTAAAATAAATAAGTTCCTGGTCTAATCCCTGTACTATGTGGGGCACAGTGTTTGCTTTGCCAATGTAACGTGATCGTGAATTGCAGTTTGTGCCATCTTTCATTAACAAAGGTCAGATTCTTATATCCGCGACGGGTCATCTGTAACAGGCCATTCTGTAATCAAAGATCTTTAATGCCGTTCCATTAATGGAAAGGAGGGCTTCCAGGCCCTAGTTCAAAAAAAAAAAATCTGTAACAGGCCATGGAGAACCGTTACAAACTTAATCATCTATAACGGGCCGCATAGGCGACCGTTACAGATAGGCATCCCAATCTTTAGCCTTTACATATGACCCCTCATCTGTAATGATTCTTAATCTATAGCCGTTACAGATGAGATCCCTAACATCTATAATGGTTGTAGATTAAGAACTGTTACAGATGAGGGGTCATCTATAACGGCTCGTCATAGAGAGCCGCTACAGATGTGTACCCTTATCTCTAACGGCTCACTTTGAGCCATTATAGATAGCTTCCACTTGTGAATATAAAAGGCCAACTTGTCCGGATGAACACTAACTCCGATCCTACCCATTTTTGTTGCTAGGAGAGTAGGAGGGGAGGCAAATTTTGCTCTAATTTATGGTGATTTTTTTTCATTTTCATCATAAAATAAATCACAGTGCCCCAATTCTTGTACATATTTCTAATATACAGTTGTTTTTTTAAAAGAAAATTTGACAGATGGACCGTAATTGGATGTATGGGAGTCACGCAAATGAAGATTATATGATGTGTATCTGAATTTTTTCATGTCGGAGAGATGGAAAGAGCGATTAGCGGAAACGAGTATATATAGGCCTTATCCATGTGTTAACTGTAGGAATGAGAGATTTGTTTGAAGATAAAAAGGAAGTACATGCCCATTTGATAAGAAGAGGTTTTATGAAGAAGTATTCATGTTGGACAAAGCACGGTTAGAAAGCAATTGTTGATGGTGATAGAGGTGAAGCTAGCAATGCATCTGATGAGGAGGATGTTCACCAAAATCATGATCATGGCAACATATTTATTTCCTCTTCTCCTACAGGAGTTGAAAGTTTTGATGTTGATAATTGCCTCGAAGAAATGTTACGTGATGCAGAGGACTCTAGTTACAAAGGAAAAGATTATGAGAGATTTACCCGGTTGGTTACAGATCAGGAGACTTCTCTGTACATATTGTAAACCGAAGTACACAAGATTATCAGCTGTGCTGGAACTTATGAAGCTCAAGACAAGTAATGGATGGACAGATACAAGTTTTACTAAGCTACTTGACATGCTAAGTGACATGCTTCCAGAGGGGAACATGCTAGCAAAGTCAACTTATGAAGCAAAGAAGGTACTATGTCCACTAGGGTTGGAGGTGCAAAGAATTCACGCTTGTCCAAACGATTACATATTGTACTACAAGAAAAATGTCAATTTAGAAGCATGTCCTTCATGCAAGGCATCTCGATACAAGAGAGAAAATAGTAGCACAAAAGACTAGAAGTCAAAGAAAGGTGATATGGCAAAGGTTGTATACTATTTGCCTATAAAAGCTCGTTTGAAGCGGTTGTTTGCTAATCCAAGAGAGGCTAAGCTTTTTAGGCGGCACAAAGAGGACCGCACTAATGATGGTATGCTAAGACATCCTGCAGATGTTGTACAATAGAGAAATATCGATCGGATATTTTCTGAATTTACAAAGGATCCAAGAAGCATTAGATTTGGGCTGAGCACGTATGGCATCAACCCGTTTAGTGACATGAGCAGTAAGCATAGCACTTGGCTAGTAATTCTCTGTAACTTTAATTTTCCCCTGGTTATGTATGAAGAAAAAAATACATCATGCTAGTAATGTTGATATCTGGTCCGAAACAACCTGGGAATGATATTGATGTGTACCTACGGCTTCTAATGGATGATTTTTTTCATTGTGGAATGAGGGGATGAATACCTCGGATGCTTACAAGCGGGAGAACTTTAAACTATATGTTCTACGTTTTTGCACTATGAATGACCAGCCAACACTTGGTAACCTTTCAGGTCAAAGTAACAGAGGAGCAGATGCATGCTCGGAGTGCTTGGAAGACACTCACAGTTTATGGTTGAAAAGTTCACGCAAGACGGTATATATGGGCCACTGTCGTTTTCTTCCTCAGTACCATCCTTATAGGAATATGATGGAGGCATTTAACGGTCAAAGAGAAATAGGCGTCAAACCTAGACATTTCACTGGAAGGCAGGTACATGACATGGTAAAGGACATCAGTAATGTATTTGGTAAGAAAAATTTTAGAGTTGGTAAGAAAACTAAGTGCATGTGGGAGTTACCATAATGGGAACATCTTGATGTTCGACATTATATTGATGTCATGCATGTTGAGAAAAATGTGTGCGACAATATTATGGGAATGTTACTGAATATTCTGGGGAAAACAAACGATGGGTTAAATTGTAGGCAAGATCTCAAGGACATGCGAATTCGGACTGAACTTTGCCCAACTAAGACAGATACTGGAAGAATTTTCCTTCCTCTAGCAGCCTACACATTGTCAAAACAGTAGAAAACTGAATTGTGCCAAATTTTACATGGAGTTAATTAAAACCCCTTCTGATTACTCATCGTGTGGCCATAATTGGGTGTTGATGGATGATTTGAAATTGAAAGGTATGAAATCACACGATTGCCACATTCTTATGACACAACTTCTACCAGATTCCATCAGGAATATCTTGCCCAAAGATGTCCGTGAGACCATAATGCCTTTGTGTTTTTTCTTCAATGCCATCCCTCAGAAGGTAATTGATCCGGCATCACTTGATTCCCTTCAAGCTGGCGTGATTAAGACATTATGTCACCTAGAGATGTATTTCCCCCCTTCGTTTTTTGACATGGTGACCAATCTAGTTGCACATCTCGTGAAGCGGACGAAAGAATTTGGTCCTGCATTTCTATGAAATATGTACCCATTCGAGAGATACATAGGAATTCTCAAGTCATATGTTAGAAACAGAGCTCTTTCAGAGGGCAGCATCATCGAAGGATACACAACTTAAGAGGTTATAGAGTTCTATGTTGACTACATGTCTGATTCTCAACCAATAGGCTAGGAGTACCTAGGTCTCGTCACGAGGGAAGACTCGCAGGTGTCGGCACTGTTGGAAAGAAACGAATCAAATCAGACCATAAGTACTCCTACGCACAGGCCCATTTCATAATACTACAACACATGAAAGATGGCCCATATGCGACTGTAGGATTGGAGCCCGTGGTAAAAGATGGCCCATATGCAGTCGACATGCTCGAGCAGGCAACACCATGCATTCTTAAAGTTGAAGTGATTCCATCATTTGCTGTGGAGGCAGCCAAGTGGAAGGCATACCCTCCGCTGAATACAGAAACAATTCACCATGCTCAAGTACGTGATGGGTATGCGAGAGTGTCGGTGGACCGTGTGTTAGATCATTGGGCCGACTACTCTTTAGATCCACAACTAAATATTTAACAACTTTAGGGGAAGCAAGAGGATCCTTTGTCCAGTGGCCCAAAAAGCATATCATCATTGAGATAGTTCCTCATCCATCAGATAAGGCACCTAAAGTACCTGCTCTACCAAGTTGTCCTCCAATTGCCGCTCGGGATGACTTGTCATGGGATTTGGGCATTGACTTGGACAAATAA More
CDS seq		ATGAAGCTTACTATGAAGCTTTCCGTTGCCTTTGCCTTCTTCTTCTTCCTCGCGGCGACTACCACCGCCTTCGCGCAGTGCACGTTCGAGATCCTTGTCAAGACCGACGGCCGGTGGTACGCCGGCACCAACGCCCGCGTCTCACTGCAGGTACGCGCTGCCAGCGGGCCGACGCTGACGATCACCAACTTGGAGTCCTGGGGCCAGATGGCTGCCAGCCACGACTACTTCGAAAAGGGGAACCTCGACCGGTTCAGGGGCACCGGCGACTGCATGCCGTCGGAGCCCTGCAACATGGTGCTCACCTCCGACGGGTCCGGGAACATGCCCGGCTGTTTGTGCCATCTTTCATTAACAAAGGAGTTGAAAGTTTTGATGTTGATAATTGCCTCGAAGAAATGTTACGTGATGCAGAGGACTCTAGTTACAAAGGAAAAGATTATGAGAGATTTACCCGGTTGGTTACAGATCAGGAGACTTCTCTGTACATATTGTAAACCGAAGTACACAAGATTATCAGCTGTGCTGGAACTTATGAAGCTCAAGACAAGTAATGGATGGACAGATACAAGTTTTACTAAGCTACTTGACATGCTAAGTGACATGCTTCCAGAGGGGAACATGCTAGCAAAGTCAACTTATGAAGCAAAGAAGCCAACACTTGGTAACCTTTCAGGTCAAAGTAACAGAGGAGCAGATGCATGCTCGGAGTGCTTGGAAGACACTCACAGTTTATGGTTGAAAAGTTCACGCAAGACGGTATATATGGGCCACTGTCGTTTTCTTCCTCAGTACCATCCTTATAGGAATATGATGGAGGCATTTAACGGTCAAAGAGAAATAGGCGTCAAACCTAGACATTTCACTGGAAGGCAGTTAATTAAAACCCCTTCTGATTACTCATCGTGTGGCCATAATTGGGTGTTGATGGATGATTTGAAATTGAAAGGATTGGAGCCCGTGGTAAAAGATGGCCCATATGCAGTCGACATGCTCGAGCAGGCAACACCATGCATTCTTAAAGTTGAAGTGATTCCATCATTTGCTGTGGAGGCAGCCAAGTGGAAGGCATACCCTCCGCTGAATACAGAAACAATTCACCATGCTCAAGTACGTGATGGGTATGCGAGAGTGTCGGTGGACCGGGAAGCAAGAGGATCCTTTGTCCAGTGGCCCAAAAAGCATATCATCATTGAGATAGTTCCTCATCCATCAGATAAGGCACCTAAAGTACCTGCTCTACCAAGTTGTCCTCCAATTGCCGCTCGGGATGACTTGTCATGGGATTTGGGCATTGACTTGGACAAATAA More
Protein seq		MKLTMKLSVAFAFFFFLAATTTAFAQCTFEILVKTDGRWYAGTNARVSLQVRAASGPTLTITNLESWGQMAASHDYFEKGNLDRFRGTGDCMPSEPCNMVLTSDGSGNMPGCLCHLSLTKELKVLMLIIASKKCYVMQRTLVTKEKIMRDLPGWLQIRRLLCTYCKPKYTRLSAVLELMKLKTSNGWTDTSFTKLLDMLSDMLPEGNMLAKSTYEAKKPTLGNLSGQSNRGADACSECLEDTHSLWLKSSRKTVYMGHCRFLPQYHPYRNMMEAFNGQREIGVKPRHFTGRQLIKTPSDYSSCGHNWVLMDDLKLKGLEPVVKDGPYAVDMLEQATPCILKVEVIPSFAVEAAKWKAYPPLNTETIHHAQVRDGYARVSVDREARGSFVQWPKKHIIIEIVPHPSDKAPKVPALPSCPPIAARDDLSWDLGIDLDK
Function		PLAT domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9SIE7]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os10g21700	LOC_Os10g21700.1	Chr10	11124394	11128653	+	MSU_osa1r7
CDS seq	ATGAAGCTTACTATGAAGCTTTCCGTTGCCTTTGCCTTCTTCTTCTTCCTCGCGGCGACTACCACCGCCTTCGCGCAGTGCACGTTCGAGATCCTTGTCAAGACCGACGGCCGGTGGTACGCCGGCACCAACGCCCGCGTCTCACTGCAGGTACGCGCTGCCAGCGGGCCGACGCTGACGATCACCAACTTGGAGTCCTGGGGCCAGATGGCTGCCAGCCACGACTACTTCGAAAAGGGGAACCTCGACCGGTTCAGGGGCACCGGCGACTGCATGCCGTCGGAGCCCTGCAACATGGTGCTCACCTCCGACGGGTCCGGGAACATGCCCGGCTGTTTGTGCCATCTTTCATTAACAAAGGAGTTGAAAGTTTTGATGTTGATAATTGCCTCGAAGAAATGTTACGTGATGCAGAGGACTCTAGTTACAAAGGAAAAGATTATGAGAGATTTACCCGGTTGGTTACAGATCAGGAGACTTCTCTGTACATATTGTAAACCGAAGTACACAAGATTATCAGCTGTGCTGGAACTTATGAAGCTCAAGACAAGTAATGGATGGACAGATACAAGTTTTACTAAGCTACTTGACATGCTAAGTGACATGCTTCCAGAGGGGAACATGCTAGCAAAGTCAACTTATGAAGCAAAGAAGCCAACACTTGGTAACCTTTCAGGTCAAAGTAACAGAGGAGCAGATGCATGCTCGGAGTGCTTGGAAGACACTCACAGTTTATGGTTGAAAAGTTCACGCAAGACGGTATATATGGGCCACTGTCGTTTTCTTCCTCAGTACCATCCTTATAGGAATATGATGGAGGCATTTAACGGTCAAAGAGAAATAGGCGTCAAACCTAGACATTTCACTGGAAGGCAGTTAATTAAAACCCCTTCTGATTACTCATCGTGTGGCCATAATTGGGTGTTGATGGATGATTTGAAATTGAAAGGATTGGAGCCCGTGGTAAAAGATGGCCCATATGCAGTCGACATGCTCGAGCAGGCAACACCATGCATTCTTAAAGTTGAAGTGATTCCATCATTTGCTGTGGAGGCAGCCAAGTGGAAGGCATACCCTCCGCTGAATACAGAAACAATTCACCATGCTCAAGTACGTGATGGGTATGCGAGAGTGTCGGTGGACCGGGAAGCAAGAGGATCCTTTGTCCAGTGGCCCAAAAAGCATATCATCATTGAGATAGTTCCTCATCCATCAGATAAGGCACCTAAAGTACCTGCTCTACCAAGTTGTCCTCCAATTGCCGCTCGGGATGACTTGTCATGGGATTTGGGCATTGACTTGGACAAATAA More
Protein seq	MKLTMKLSVAFAFFFFLAATTTAFAQCTFEILVKTDGRWYAGTNARVSLQVRAASGPTLTITNLESWGQMAASHDYFEKGNLDRFRGTGDCMPSEPCNMVLTSDGSGNMPGCLCHLSLTKELKVLMLIIASKKCYVMQRTLVTKEKIMRDLPGWLQIRRLLCTYCKPKYTRLSAVLELMKLKTSNGWTDTSFTKLLDMLSDMLPEGNMLAKSTYEAKKPTLGNLSGQSNRGADACSECLEDTHSLWLKSSRKTVYMGHCRFLPQYHPYRNMMEAFNGQREIGVKPRHFTGRQLIKTPSDYSSCGHNWVLMDDLKLKGLEPVVKDGPYAVDMLEQATPCILKVEVIPSFAVEAAKWKAYPPLNTETIHHAQVRDGYARVSVDREARGSFVQWPKKHIIIEIVPHPSDKAPKVPALPSCPPIAARDDLSWDLGIDLDK More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_10g0361300	SBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	Os10g0361300	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_10g0007980	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_10g0008020	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_10g0007930	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_10g0008200	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_10g0008080	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_10G0194600	SBH	0	0	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_10g0008030	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_10G0208100	SBH	0	0	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_10g0007770	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_10g0007850	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_10g0008240	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_10g0007720	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_10g0008330	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_10G008040	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_10g0008080	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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