Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g21402 | OGI:10036950 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:10912454-10912984 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATTTACCTGGGCCAATACATGAAATTCTTGTGCTATTTGGGGGATTTGTTCTTCTACTAGGGGGTCTAGGGGTGGTATTACTTACCAACCCAACTTTTTCGGCTTTTTCGCTAGGATTAGTTCTTGTTTGTATATCCTTATTCTATATTTTATTGAATTCCTACTTTGTAGCTGTGGCACAACTTCTTATTTATGTGGGAGCTATAAATGTCTTGATCATATTTGCCGTAATGTTCGTAAATGGCTCAGAATGGTCTAAAGATAAGAATTTTTGGACTATTGGAGATGGGTTCACTTCACTCGTTTGTATAACTATTCCTTTTTCACTAATGACTACTATCCCAGATACGTCATGGTATGGAATTCTTTGGACTACAAGATCAAACCAAATAGTAGAACAGGGTCTCATAAATAACGTTCAACAAATTGGGATTCATTTAGCAACCGATTTTTATCTTCCATTTGAACTCATTTCCATAATTCTTCTAGTTTCTTTAATAGGTGCAATTACTATGGCTCGGCAATAA
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| CDS seq | ATGGATTTACCTGGGCCAATACATGAAATTCTTGTGCTATTTGGGGGATTTGTTCTTCTACTAGGGGGTCTAGGGGTGGTATTACTTACCAACCCAACTTTTTCGGCTTTTTCGCTAGGATTAGTTCTTGTTTGTATATCCTTATTCTATATTTTATTGAATTCCTACTTTGTAGCTGTGGCACAACTTCTTATTTATGTGGGAGCTATAAATGTCTTGATCATATTTGCCGTAATGTTCGTAAATGGCTCAGAATGGTCTAAAGATAAGAATTTTTGGACTATTGGAGATGGGTTCACTTCACTCGTTTGTATAACTATTCCTTTTTCACTAATGACTACTATCCCAGATACGTCATGGTATGGAATTCTTTGGACTACAAGATCAAACCAAATAGTAGAACAGGGTCTCATAAATAACGTTCAACAAATTGGGATTCATTTAGCAACCGATTTTTATCTTCCATTTGAACTCATTTCCATAATTCTTCTAGTTTCTTTAATAGGTGCAATTACTATGGCTCGGCAATAA
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| Protein seq | MDLPGPIHEILVLFGGFVLLLGGLGVVLLTNPTFSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKDKNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFELISIILLVSLIGAITMARQ |
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| Function | NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic [UniProtKB/Swiss-Prot:P0C331] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g21402 | LOC_Os10g21402.1 | Chr10 | 10912454 | 10912984 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATTTACCTGGGCCAATACATGAAATTCTTGTGCTATTTGGGGGATTTGTTCTTCTACTAGGGGGTCTAGGGGTGGTATTACTTACCAACCCAACTTTTTCGGCTTTTTCGCTAGGATTAGTTCTTGTTTGTATATCCTTATTCTATATTTTATTGAATTCCTACTTTGTAGCTGTGGCACAACTTCTTATTTATGTGGGAGCTATAAATGTCTTGATCATATTTGCCGTAATGTTCGTAAATGGCTCAGAATGGTCTAAAGATAAGAATTTTTGGACTATTGGAGATGGGTTCACTTCACTCGTTTGTATAACTATTCCTTTTTCACTAATGACTACTATCCCAGATACGTCATGGTATGGAATTCTTTGGACTACAAGATCAAACCAAATAGTAGAACAGGGTCTCATAAATAACGTTCAACAAATTGGGATTCATTTAGCAACCGATTTTTATCTTCCATTTGAACTCATTTCCATAATTCTTCTAGTTTCTTTAATAGGTGCAATTACTATGGCTCGGCAATAA
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| Protein seq | MDLPGPIHEILVLFGGFVLLLGGLGVVLLTNPTFSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKDKNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFELISIILLVSLIGAITMARQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 18.182922 | 16.564022 | 4.122477 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g24574 | RBH | 20.235823 | 17.434946 | 3.978286 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006710 | SBH | 39.312271 | 11.566991 | 69.041618 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006790 | SBH | 11.777254 | 1.219464 | 10.348128 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007720 | SBH | 148.116699 | 10.236263 | 124.920898 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015370 | SBH | 14.439623 | 0.365978 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019960 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006550 | SBH | 9.211183 | 0.000000 | 9.065042 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
