Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g17990 | OGI:10031690 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:9120533-9126526 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTGCACCCATAAAGCAAGGAAATAATGGGATTAATATCGTTCTACAAAGTACAAGAAGTCAAGAACCCATCGACGACAAGAAAGAAAAAAAAAATGTCATGGCTGCTAGTTTGCTACTGGGCCTTCATTTGCCTTCTCATGCAGCCACAAAGATGAAAACCGAAAGAAAAATACAAAGAGAAGGCAAGAACAAACTCCTGTATACTCGGAAAACATCATACCCTTACATCGATCGAGGAAAAAAAAAACAATCCTAAGCGTTATCATTCTTTTGTTTTTAGGGTGTTAGGGCTGTACATGATGATCTAAAAGTAAAAAAAACAATGCACATAGTCCTGTTGATTTCGTGCATGATGTCTCTATGTTAGCATCAGTTCCCTCTCGTCAGTAACTTGCCTAGTTGCTCGTAAAGATCATGCTGCTCCTCGAACGTGAGATTTCTCAGTATCTGCATTACATAAATGCATTAAGGGTCAGGTTACATTTAATTCACAATGATATAATGCAAGTCGAAAGGAGTCAAAAGTACCTGCTCCATGATTGTCTCAACAGATAAGTCCTGTACCATCACAAACGATTGGTAATAGATATAAGCAAACACAGCCATAACCATCTGCAAGATGTCAATGATTAGAACGTCAAATGAGATAAAACCATTCAGCCGTCGTGAGCTGTAATGTAAGAATGAAGAACATGATCTCAAGCTCAATAATATGGTACTTATGTTTTTAACTCTAACAAAGACAAAATGAACAAAATCTTACAGTAAGTTGGAATCGCAGGAGAGCCCAAGTGATGAACAAAATAATGCCTAGTATTTTTTATGCAAGTAAAATTGCAGAACAGAGTAATTAATGATGATTTGATCAAACATGGAAAGCATTGCACAGAGCCCGAGAGTATATACTACGAGAGCACTAGCAGGTATACAGAGGTTTACTCATCTGAAAGACACCATTATAAACAGCCTTCAGAAAAAAATTAACTTAAAAAGTAACTTACTTGACAATCCATCCTGTCAGTAAATCCACCATGGCCAGGTATGCTATCACCAAAATCCTGAAAAGTATACACTGAATAAGATTTCGATATTGAAATATTTTTTTTCCAAAAGATAATAGATGCGTACCTTGAATTTGAAAGCTCTTTTAAAACCACTAGCGAAAAACCCTCCAAATGGTGCTATTATTGAAGCAAACAAGCCAAGAGCTAAGGCATGCCACTGAATAGGCATAATTGCCACTTCTCGCCAAGGGATCTGCAAAATAGAAAGGATGACAAAAAGGCTGGATGGCACAAGGACTAGAAGACATGGAATGAGAACTCCGGTTCACTTATAAGAAACATCAAAATGCTTTCTTACCCATCCTGGTAAATCATAACTTTCTGGTGTAAATATAGAGCCAGGATCACAATGAAGCCATCCAGTCGACAAATCCTGTAGATAACAGGATTAACAAAGATTGAAGTAGATTCCAACCTTGCTTCGAAAAATATAAAATTGCATCTACATTACTGAGAGGCTTAAAACCAAGTAATAGAACTGAAAATTTTGCACTTCTGTTCCATACCAAAGAGTGAGCTAATTTTTTTGCAGAAATACCGCTACTGTCACCATACTGGACATATTCCCCTTCCGCATCGACTAACTTCTTCCACTCCCCTGAGTCACCAAGCCCACCACCACCACCCACATCTTGCCCAATTCCTCCCATGCCCACTACAATGCCTCAGAATATATTACATTTTACACCGCCCAACCAATCCCAACCTGATGCAGATTCTACTCGGATTAAAATGCCCACCATGGGTAGCCAGGGTAACCCCTACAGCTAGCATGGTGTATCAAGTCGCTCATCTGCCACTACCTGCATCACCTTCCACCATCTGCAGCCCATAAGCAGCAACAAGTGGCAGCGAGGGCTATCACAACAAGCAACAAGTGCCATGACAGCAATGACATCTCTTCATTGCTCACACCTTACTGGTCAGTTTCTGAGTTATTGGTTGTTCTATTGTGTTGTTTTGCACAAGTTTCTCGGTCTTGAGCTGCGACAATTTTGTAATGCCTGTCTTTGGTATTAGTTTTCATTTTTTCAGTGGCCTACGGTTCTTGAGTTGCGACAATTCCGTTCAGTTAAGGACAGTTGCACTTTGATCTGTGCTTGAAGGAAATGCATAACTGATTGGATGGCAGGGAGAATGCAAATTACCATGTACCACCACAAAGAGGAAGGATAGGGAAGGGAGCTAGAGAATTTTGGTTACTCAGTTGTGTTCTTTTGGTCTGATTAGACTATACATTGAGACATAGGATATTTCAATCCTATCACATGGTCATGGTTACAGAAAAGAAATTATTTCAAACGAAAAATGCAACAGTAAGAGACAGTAGTGCTATTCATGAAAGATTTTGATCCTGCCTGTGCAAATTACAACAGTATGTATGCAATTCTCTTTGAGAAAAAGGCTAATCAATGTCAAGGTAGGAGCTTTACCTTTCTGGGGCATGTTAACCACTGGAAATGACCCATGAAATTAGCAAGCTACAAAAGAAAACCAGCAATAAATTATTATCAATTGAACTGTTTCAGCACATCGACCATATTTAGATGTGAAAAATCCAAAAGGTACTATAAAAGATGCAGTGTGAAGTTGTGCCAGAAAATATTGTAGCATCAGTAATTCATTACACTTCACACTTAAGTGACTAATAAAATTTATTACAGAGTGTGCATATGCCTTCTGCTTTCAAGTTTCAAGAACTATGCCTGCACAGCATGATGAATCATGGCATTGCATCTTTTTTGTTCCAACACTGGCCATGATTTTGTAAACTAATATGACAAGCAGTATATCAATTATAGTATAGTGTGTTGGAGCATCTATCAAACCATAACCAGTATGTTTGAGACTTTGTTTATTTTTTTAAGAAACCATTTGAACAGAACCGATTGTTGTCAGATGGTAGAAAAGATACTCAGAATTCTATTCTGAACGAGATACTGAATTAGTTACCAACAATGAGAAACTGAGACCTCTACGATTGAAGGATATATGGGTAGACAAGTGCTACTAACCACAAATGCAGAAAGCATGGTAGTCACTGATGCACCTAGAAAGCCCTCCCAAGTTTTTTTTGGAGAGAGCTTAATTAAGGGTGTTTTCCCAAAGAAGAAGCCGAAGAAATATGCAGCAACATCGTTGATAGCGATCAAAGAAGCTGGTAGGAGGAACCTAAAATAAGCACCATTTTTATGTCAGCCTTGCATTTGTCACTTGGATATGCCAAAAGGCTGCATAAACAGCAGTATTGTAGTTCTGAAAGAGTGCAAGCACATAATGATTTCATGGCATGTTATCAGAAAATATATTATAAATGGAATATCTATACTTATTTTTACTCAAAATGTTAGTAGTGGTGGTGGTCGTTCTGCCACACCACACCTTCCACTGACATTAGGACCCAATCTATACAAACACCACCACCACCGATCTGACAAATCGGTCCCATTAGTCAGCCCCTACCATCCAATGAGTCCTCTCCTGTTTCACTGCAGGCTCTCCCCAAATTTCAAAATCACCTACTTGTTCAATAAGCAAAATCATAAAAGCACTACTTGGACTAAATGTGTGCTTACTCGACATAATAAGGTAGAAACTCATTTATTTTTCCCGTTGCAACACACAGGCTATTAGTCCCACATGGAGAATTTAGACAGGTTAGGGCTAGCACATAAATACAATGTTACGACCATAGCACCTCCAGATTAAAACCTTTTACACAAAACGAGACAATGTAAATTCCTGCCTGTATAGAACAGCTTGGAATAGTATGTATTTTGTAAGCTATGGTGTCACAGCTTCTTCTTGATACAAGTTACTTCAATGCTGCATTCAAATGAAATATGCTAAATTTTAAGCATGACAGGGTGTTTCTTCAGTACTCCTGCGTCCCATAATATAAGTGATTGAAGGATTCATATTCTGTCCCAATGTACAATCGGATTTTTTTAGAGTATTGCATGTCTCATAAATCACCCCTCATTTAACTTTGTTCTCATCTTACCCCCAACGACCCTCCCACACCTCGCATGCCCTCATTTAATGAGGAACACTATAGTCTCTGTCCTTCGTCCATAGGCTATCGAAAGAAACCTAGTATCCCTTATATTATGGGACAAAGGTAGTATTAAATTATTAGAGCATTGTAATATCACTTTGATCCTTCAGTCTTAAAAACTCCTTAAACTAGTAGTATATTCGTATTCTGCTGCAAATCTCATGAAGGTCATTACATGAAATACATTTGTGAGCAGAACCACTAATGACTACAAATTGAAATAAGAAAAGGATATTCTAAGCCTACAGTACTAAGGCTGAAAATGCGCATTTTTATGATCCTAAAGATTAGAACATTCTGTCGGTTAGAGACTTTACCAAAACATTCCTTCATATATATTGGCCACAGTGAAAGATGACTGTGCAAATACCATCAATAGGATCATGTGAGTCCATGCATATTGACTGAATTGATACTTGTACGCCTTTTTCTTTAGAGTGAGAATAAACCATACAAACCCTGTATGACAGAAGTAATAACCAAATTGATATATTGGCAGCACGTAGTTAAAATTTTATCAATGGTGCAATGGACTCATCTATATATCAATAAGTTTATGCATTTCCACTATACTAGTGAAATTATGACATGAAAAAAAAATGTGCTATTTCCGCTATACCAGTGAACTCTAGCATTTCATCTGTAGGTATGACATGAAAATAATAGTGCATTTTAAGTACTCACAAGGCACAACCTCCTAAAAACTTTGATTAAACATCTTTAATTCATCCCAAAACCAATCAGCTAACTGTGAAAACTAAGGTTTACAGTAGCCATGCAGTGTTCAACCATATCTAATTGTCATTAATATAACATGGCCAAAGAATGAACTGTTGTTATTACCTGCTATATAAAGAAAGTAGCAAATAAACATTTGGTACTTGATCAAGCCACTCACAAGCTTGTACAATAACTTGTCTGAAGTCACCGTGTTGACAAGCTGCCGACTAAGGAAACGGCCATACGCAAAAAGCATCGCAGTGAAGAAGAAATGCCTGCAATTGTCACGAAGAAAACAAGAATCTGTAATGGCATGTAAACATTCAAATGTTCATAGTCAGAATTAACCATGCCATTTTTACCAGTTAAGTAGTCTGAACCCTGGAAGCTGCCTGTCCTCGTTGGCCTTCCTCAGCAGATTGAAGAGCTCACTCGCCATAAAGATTTGGATAACGACAACCATAGCCCATATGTATAGATGTCCCATGTATATCAAAAACACAAATCCTGCCATCATCCAGAGCGAAGAATACGTGCGAATAAGCATTGACTTGTACTTGTTCTGGTCATTTAGCAGCAAATTAGCGCCATTGGTTTTGTTCACGTCAGATGGAGCCTGTAAAGAAAAAGTTCATGGAATTGTCCACCACTCACAAAATCAAGAAACATAAGGCCACCAAGAATGAGATATATATCTCAACAGGGGAAATAAAAAATAAAAAATAAAAACTCACATCGCTGGAGCGCTTCCGCTGCCTCACACGGGCACCATGGGTCGGGCTTGGAGTTCCCGGGGTGACATCACCACCAGAGCCATTGTCCCTTTCAGCGGCGGATCTAACATGGGGCATGGGGAGGGTTGAGCTGAAACCCCCAAAAATAATTTTTACAAACTGCTATCAGTACGGGGGCGCAGAGAGAAATGGGAGAGGGGGTGTGCCGAGGAGTGCTCACCGGCGGGGAGAGGATGCGGCGGAAGCAGCAGGACGGTGGCGGCGGCGGAAGCAGCAGGACGGTGGCGGCGGCGGCGGCGGCGCTGCTCGCACGCCGGGATGGGGATCGGCGGCTGGTCGGCGCGGCGGGCGAAGTCGCGAGGAGGGAGACGGGAGATCGACCGACCAAAGGAGTCAGGGAGTCAGAGGCCTATT
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| CDS seq | ATGCCCCATGTTAGATCCGCCGCTGAAAGGGACAATGGCTCTGGTGGTGATGTCACCCCGGGAACTCCAAGCCCGACCCATGGTGCCCGTGTGAGGCAGCGGAAGCGCTCCAGCGATGCTCCATCTGACGTGAACAAAACCAATGGCGCTAATTTGCTGCTAAATGACCAGAACAAGTACAAGTCAATGCTTATTCGCACGTATTCTTCGCTCTGGATGATGGCAGGATTTGTGTTTTTGATATACATGGGACATCTATACATATGGGCTATGGTTGTCGTTATCCAAATCTTTATGGCGAGTGAGCTCTTCAATCTGCTGAGGAAGGCCAACGAGGACAGGCAGCTTCCAGGGTTCAGACTACTTAACTGGCATTTCTTCTTCACTGCGATGCTTTTTGCGTATGGCCGTTTCCTTAGTCGGCAGCTTGTCAACACGGTGACTTCAGACAAGTTATTGTACAAGCTTGTGAGTGGCTTGATCAAGTACCAAATGTTTATTTGCTACTTTCTTTATATAGCAGGGTTTGTATGGTTTATTCTCACTCTAAAGAAAAAGGCGTACAAGTATCAATTCAGTCAATATGCATGGACTCACATGATCCTATTGATGGTATTTGCACAGTCATCTTTCACTGTGGCCAATATATATGAAGGAATGTTTTGGTTCCTCCTACCAGCTTCTTTGATCGCTATCAACGATGTTGCTGCATATTTCTTCGGCTTCTTCTTTGGGAAAACACCCTTAATTAAGCTCTCTCCAAAAAAAACTTGGGAGGGCTTTCTAGGTGCATCAGTGACTACCATGCTTTCTGCATTTGTGCTTGCTAATTTCATGGGTCATTTCCAGTGGTTAACATGCCCCAGAAAGGATTTGTCGACTGGATGGCTTCATTGTGATCCTGGCTCTATATTTACACCAGAAAGTTATGATTTACCAGGATGGATCCCTTGGCGAGAAGTGGCAATTATGCCTATTCAGTGGCATGCCTTAGCTCTTGGCTTGTTTGCTTCAATAATAGCACCATTTGGAGGGTTTTTCGCTAGTGGTTTTAAAAGAGCTTTCAAATTCAAGGATTTTGGTGATAGCATACCTGGCCATGGTGGATTTACTGACAGGATGGATTGTCAAATGGTTATGGCTGTGTTTGCTTATATCTATTACCAATCGTTTGTGATGGTACAGGACTTATCTGTTGAGACAATCATGGAGCAGATACTGAGAAATCTCACGTTCGAGGAGCAGCATGATCTTTACGAGCAACTAGGCAAGTTACTGACGAGAGGGAACTGA
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| Protein seq | MPHVRSAAERDNGSGGDVTPGTPSPTHGARVRQRKRSSDAPSDVNKTNGANLLLNDQNKYKSMLIRTYSSLWMMAGFVFLIYMGHLYIWAMVVVIQIFMASELFNLLRKANEDRQLPGFRLLNWHFFFTAMLFAYGRFLSRQLVNTVTSDKLLYKLVSGLIKYQMFICYFLYIAGFVWFILTLKKKAYKYQFSQYAWTHMILLMVFAQSSFTVANIYEGMFWFLLPASLIAINDVAAYFFGFFFGKTPLIKLSPKKTWEGFLGASVTTMLSAFVLANFMGHFQWLTCPRKDLSTGWLHCDPGSIFTPESYDLPGWIPWREVAIMPIQWHALALGLFASIIAPFGGFFASGFKRAFKFKDFGDSIPGHGGFTDRMDCQMVMAVFAYIYYQSFVMVQDLSVETIMEQILRNLTFEEQHDLYEQLGKLLTRGN |
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| Function | Phosphatidate cytidylyltransferase 3 [UniProtKB/Swiss-Prot:Q1PE48] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g17990 | LOC_Os10g17990.1 | Chr10 | 9120533 | 9126526 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCCCATGTTAGATCCGCCGCTGAAAGGGACAATGGCTCTGGTGGTGATGTCACCCCGGGAACTCCAAGCCCGACCCATGGTGCCCGTGTGAGGCAGCGGAAGCGCTCCAGCGATGCTCCATCTGACGTGAACAAAACCAATGGCGCTAATTTGCTGCTAAATGACCAGAACAAGTACAAGTCAATGCTTATTCGCACGTATTCTTCGCTCTGGATGATGGCAGGATTTGTGTTTTTGATATACATGGGACATCTATACATATGGGCTATGGTTGTCGTTATCCAAATCTTTATGGCGAGTGAGCTCTTCAATCTGCTGAGGAAGGCCAACGAGGACAGGCAGCTTCCAGGGTTCAGACTACTTAACTGGCATTTCTTCTTCACTGCGATGCTTTTTGCGTATGGCCGTTTCCTTAGTCGGCAGCTTGTCAACACGGTGACTTCAGACAAGTTATTGTACAAGCTTGTGAGTGGCTTGATCAAGTACCAAATGTTTATTTGCTACTTTCTTTATATAGCAGGGTTTGTATGGTTTATTCTCACTCTAAAGAAAAAGGCGTACAAGTATCAATTCAGTCAATATGCATGGACTCACATGATCCTATTGATGGTATTTGCACAGTCATCTTTCACTGTGGCCAATATATATGAAGGAATGTTTTGGTTCCTCCTACCAGCTTCTTTGATCGCTATCAACGATGTTGCTGCATATTTCTTCGGCTTCTTCTTTGGGAAAACACCCTTAATTAAGCTCTCTCCAAAAAAAACTTGGGAGGGCTTTCTAGGTGCATCAGTGACTACCATGCTTTCTGCATTTGTGCTTGCTAATTTCATGGGTCATTTCCAGTGGTTAACATGCCCCAGAAAGGATTTGTCGACTGGATGGCTTCATTGTGATCCTGGCTCTATATTTACACCAGAAAGTTATGATTTACCAGGATGGATCCCTTGGCGAGAAGTGGCAATTATGCCTATTCAGTGGCATGCCTTAGCTCTTGGCTTGTTTGCTTCAATAATAGCACCATTTGGAGGGTTTTTCGCTAGTGGTTTTAAAAGAGCTTTCAAATTCAAGGATTTTGGTGATAGCATACCTGGCCATGGTGGATTTACTGACAGGATGGATTGTCAAATGGTTATGGCTGTGTTTGCTTATATCTATTACCAATCGTTTGTGATGGTACAGGACTTATCTGTTGAGACAATCATGGAGCAGATACTGAGAAATCTCACGTTCGAGGAGCAGCATGATCTTTACGAGCAACTAGGCAAGTTACTGACGAGAGGGAACTGA
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| Protein seq | MPHVRSAAERDNGSGGDVTPGTPSPTHGARVRQRKRSSDAPSDVNKTNGANLLLNDQNKYKSMLIRTYSSLWMMAGFVFLIYMGHLYIWAMVVVIQIFMASELFNLLRKANEDRQLPGFRLLNWHFFFTAMLFAYGRFLSRQLVNTVTSDKLLYKLVSGLIKYQMFICYFLYIAGFVWFILTLKKKAYKYQFSQYAWTHMILLMVFAQSSFTVANIYEGMFWFLLPASLIAINDVAAYFFGFFFGKTPLIKLSPKKTWEGFLGASVTTMLSAFVLANFMGHFQWLTCPRKDLSTGWLHCDPGSIFTPESYDLPGWIPWREVAIMPIQWHALALGLFASIIAPFGGFFASGFKRAFKFKDFGDSIPGHGGFTDRMDCQMVMAVFAYIYYQSFVMVQDLSVETIMEQILRNLTFEEQHDLYEQLGKLLTRGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.291560 | 0.114023 | 1.043603 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0327300 | RBH | 0.437822 | 0.172383 | 4.122323 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55360 | RBH | 3.762595 | 2.327699 | 2.393556 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0327300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006560 | RBH | 0.221832 | 2.810239 | 1.718583 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0006440 | RBH | 0.0 | 2.021475 | 1.285684 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0006300 | RBH | 0.000000 | 4.235298 | 4.687170 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0006730 | RBH | 0.038569 | 0.267997 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0006430 | RBH | 1.111743 | 7.791271 | 8.766125 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0159500 | RBH | 1.84807 | 8.342586 | 9.7267465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0006610 | RBH | 0.000000 | 0.373172 | 0.392408 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0173700 | RBH | 0.9449375 | 2.0877765 | 5.1143795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0006400 | RBH | 0.070689 | 0.345767 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0006440 | RBH | 0.197611 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0006650 | RBH | 6.085157 | 31.017632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0006310 | RBH | 0.214795 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0006730 | RBH | 0.000000 | 2.896011 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G006550 | RBH | 0.000000 | 3.703014 | 1.453311 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0006660 | RBH | 1.390155 | 36.693172 | 7.775741 |
