Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g10870 | OGI:10020330 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:6018131-6019184 | ||||||||
| Gene Symbol | RLCK294, OsRLCK294 | ||||||||||
| DNA seq | AAAAGATTATGTGATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAATCCAGCTGCAGACAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCACTACTGTATAAAGTTCCCTAGGGAAAAAGGTAATGCCGACCTGAACTCAAAATTGACAACAACATTGCCTAATTGATC
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| CDS seq | ATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAATCCAGCTGCAGACAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGA
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| Protein seq | MEWIRSEIKKERPKNDWIAGAAITNPAADRKKPKRRAREWWREEYADELAKKQKRRALAKSKSEQAGLQWWERDIDDDLDAKGRSKWSMMKSWSRRSNGSTGNGNGNGNGSINWWVNGARSTRDWASGEFVPKSSGAVSSTPSMRGTVCYVAPEYGGGGPLSERCDIYSYGVLLLVLISGRRPLQVTASPMSEFEKASLISWAKHLARVSRLIDLVDPALQDVNRDEVLLCITVALLCIQRSPARRPSSEEVLRMLSGEGEPPHLPLEFSPSPPGGFPFKSRKKVR |
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| Function | Receptor-like serine/threonine-protein kinase At2g45590 [UniProtKB/Swiss-Prot:O64639] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g10870 | LOC_Os10g10870.1 | Chr10 | 6018131 | 6019184 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAATCCAGCTGCAGACAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGA
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| Protein seq | MEWIRSEIKKERPKNDWIAGAAITNPAADRKKPKRRAREWWREEYADELAKKQKRRALAKSKSEQAGLQWWERDIDDDLDAKGRSKWSMMKSWSRRSNGSTGNGNGNGNGSINWWVNGARSTRDWASGEFVPKSSGAVSSTPSMRGTVCYVAPEYGGGGPLSERCDIYSYGVLLLVLISGRRPLQVTASPMSEFEKASLISWAKHLARVSRLIDLVDPALQDVNRDEVLLCITVALLCIQRSPARRPSSEEVLRMLSGEGEPPHLPLEFSPSPPGGFPFKSRKKVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.672252 | 0.862868 | 1.308735 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0187500 | RBH | 2.519044 | 0.556564 | 5.191482 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g23700 | SBH | 0.421348 | 0.526605 | 0.123125 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0187500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005120 | RBH | 0.735064 | 12.273849 | 5.941707 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0004810 | RBH | 0.364004 | 4.181863 | 1.880294 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0004770 | RBH | 1.354337 | 5.616915 | 6.643136 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005130 | RBH | 0.032445 | 0.152369 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0004850 | RBH | 2.704327 | 6.129143 | 9.361319 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0101700 | RBH | 4.778172 | 7.7895665 | 12.5590755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005030 | RBH | 0.340240 | 0.306370 | 0.351744 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0111900 | RBH | 7.626829 | 12.553955 | 12.7786995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0004900 | RBH | 0.035253 | 0.102556 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0004940 | RBH | 0.498632 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0005080 | RBH | 1.487675 | 5.981286 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0004820 | RBH | 0.561210 | 0.0 | 1.022176 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005180 | RBH | 0.515617 | 4.631908 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G004980 | RBH | 0.301190 | 0.352947 | 2.040823 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005040 | RBH | 0.613982 | 8.106830 | 7.484203 |
