Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g06810 | OGI:01011440 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:3551237-3553611 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGATGACTGGGAAAATGCCGGCTAGGGTCAAGCGGATTAGGTTTGCCGACTCACAAAACGAGTGCGAGGTCGTCCTGCCCCAAACACTTCCTAGCGGCGGAGCGTCTTCCTCAAGGGCGGTCGGTGAAGCAGCACAGAGCAAGCCAAAAAGGAGACGGCGCGCTACGTCGGCCGGCGAGGGCCCATCAGTGGACGAGGTGAGCACCACATTCTTTTTTTTTTGCCTTATAGATTATTTCCCTGTCCTTTTTTTCCACAAATACTATCAACATCTAGATTGTAATGTTTTGTTGTTTTGTTGCATCATAGTGGGACCAGTGTTCATGCTCACATATCATGGGTTGCCCACGGGGTCACGCGTAAAAAGTCTAATGGGTTGCTGCTGTTTATCAAACAATTAAATGCATATGCCAAAGCATACTATAGTTGTCCAAATCGTTTTAGTTCAAAAATTACTGCTATGTGTATAGCCTGATGCGTTCAGTGCTCTGTTTTTCCATGTATAAGCTATATTTTTCGTCCTTTGTACCACTGCTTGGGGGTGGGGGAGTGGTGTGGTTGGGGGGGGGGGAAGCCCACATTGTTTTCAGTTAAAAGTTTTATTGATATTTTGGAGTGGGTATATTCAGAATGGTGATCAAGTTATATCTAGATTCGCACACACACCAGTCGCCCAAGTATTATGCCACTTTAATAATTGCTTATATGATATATCATGATCACCCCTTGTAAGTCTGTATCCTTGAGAGCTACAATTGGTACCGACCTCCCTCACATGGTTTTTGCTGCTCGCCATATCTATTCACTTTGTGTATTTACTTTCCTATTTTTATGTTCGCAGCCATATGAGACAAAGGGCCCTAACCTCACACGATGTAGCGCCGCTATAGCGGCGAAGGCTTGTAGAGCGCTATCTCCCGTACACCATGAGAAATTGGAGGAGATTGGACTTGATGCGGTAGCGTGCATGTCACTTGAAAGCCTTGAGCAGCCAGACCTAATACGATGGCTCATGGACAGGACTGATCCCGACACAATGTGCATTTCAATAAATGATGACATGAAGATACAGATCACCCCTCGCATTGTGAGGCTTGTCCTCGGGACCCCGCTCGGTGGAAATGACATTGTACTCCCATCCCACAAGGTTGTGCGAACCGTTCACGAAAGCATCACCGATGAATTGGGAATGCATAAGAAGGCTAGGTTATCAGCAAAACAGTTGATCGAGGTGATCAAGAGCCAGAAAGATGACCACCGGGCTGTTCGATATTTCATCATGGTACTTATGTCAAAGCTGCTAGTTCGAACTACCGATTTTTATGTGCCCAAGGGCGATGTCGGGGTCGCATCCAACCTCGACAGGGTCGCTGCTATTGACTGGTCCAAGGCTGTGTTCCGGGCTTTAAGCGACAGCATCAGGTGTTGGCGCCAAAACCCGGCATCCTCAATAGCTTCTTGTGTCGTATTCCTCGCGGTAATCCCTTCAGTTGACATCTCCTTTTCTTTCAAATTTTTCTTTTACCACCAAATTGTTGTTTCAATTCTAATCCCTGGTCTGTTTGCTATTTTGACAATTTTTTTCGTCAACTCGGTGCATGCGTACACAGGTTTTATATCTGGACAACATTCTGCCACCAAGAGACATTGGGCTGGATTTAACCTTCACCCCACGTATTCAGATGTTTACCAAGGACATCGTGGATAAGCTCGTTGCTGCTGATCAGGAAGCAGGCGGGGATGGCACGCTGCCTTTTGGCAACCTCCCCGTACGTGTTGTTCCCCCTCTTATTTTATTGATATTTTTTTAGCTCAATAGTATCTATCAATAAAAAACAGTGTGTAGTACAACACCATGCAAAACACGATAACAAGGGCCACCATTTATACTGTTCTTCCAGGTCGCAATTAAAAATATTTTGTTGTTATGTACATGTCAATGTTCCACACACACCCGTGTATCGTTTACAGCCTCGAAAATTCTTGTTTTTTGTTTTCCGCTAACCACATGATTTGTCCCTCGCAGCTGCGACCGTTGGAGAGTACATGCTATGCCAACAAGCCTGCCGGCAGGGCAAAGGGACCGATGGTAGAAGATATCAGGGCACCGGCATACACCTTCCCTAATATGTCTACCATCATTGGGCCACACTTCGCGGGGCTGCCCCCCGACCAGAGGCTCGGATTGTTGGAGTCCATAGCCGAGTATGACAGGCAGGCAAAAGAGAGTGCAATGGAGATCGAGCGCCAATTCAGGCTCGTTGTTGACAAGCAGCACATGCTATGTCAGAGTGTCATTGATGCGTTGCAAGCGAACCGAGTACCACACCCCCCAACCGTTGCGCCACTGTCACGCCCGGAAATTCACTAA
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| CDS seq | ATGGAGATGACTGGGAAAATGCCGGCTAGGGTCAAGCGGATTAGGTTTGCCGACTCACAAAACGAGTGCGAGGTCGTCCTGCCCCAAACACTTCCTAGCGGCGGAGCGTCTTCCTCAAGGGCGGTCGGTGAAGCAGCACAGAGCAAGCCAAAAAGGAGACGGCGCGCTACGTCGGCCGGCGAGGGCCCATCAGTGGACGAGCCATATGAGACAAAGGGCCCTAACCTCACACGATGTAGCGCCGCTATAGCGGCGAAGGCTTGTAGAGCGCTATCTCCCGTACACCATGAGAAATTGGAGGAGATTGGACTTGATGCGGTAGCGTGCATGTCACTTGAAAGCCTTGAGCAGCCAGACCTAATACGATGGCTCATGGACAGGACTGATCCCGACACAATGTGCATTTCAATAAATGATGACATGAAGATACAGATCACCCCTCGCATTGTGAGGCTTGTCCTCGGGACCCCGCTCGGTGGAAATGACATTGTACTCCCATCCCACAAGGTTGTGCGAACCGTTCACGAAAGCATCACCGATGAATTGGGAATGCATAAGAAGGCTAGGTTATCAGCAAAACAGTTGATCGAGGTGATCAAGAGCCAGAAAGATGACCACCGGGCTGTTCGATATTTCATCATGGTACTTATGTCAAAGCTGCTAGTTCGAACTACCGATTTTTATGTGCCCAAGGGCGATGTCGGGGTCGCATCCAACCTCGACAGGGTCGCTGCTATTGACTGGTCCAAGGCTGTGTTCCGGGCTTTAAGCGACAGCATCAGGTGTTGGCGCCAAAACCCGGCATCCTCAATAGCTTCTTGTGTCGTATTCCTCGCGGTTTTATATCTGGACAACATTCTGCCACCAAGAGACATTGGGCTGGATTTAACCTTCACCCCACGTATTCAGATGTTTACCAAGGACATCGTGGATAAGCTCGTTGCTGCTGATCAGGAAGCAGGCGGGGATGGCACGCTGCCTTTTGGCAACCTCCCCCTGCGACCGTTGGAGAGTACATGCTATGCCAACAAGCCTGCCGGCAGGGCAAAGGGACCGATGGTAGAAGATATCAGGGCACCGGCATACACCTTCCCTAATATGTCTACCATCATTGGGCCACACTTCGCGGGGCTGCCCCCCGACCAGAGGCTCGGATTGTTGGAGTCCATAGCCGAGTATGACAGGCAGGCAAAAGAGAGTGCAATGGAGATCGAGCGCCAATTCAGGCTCGTTGTTGACAAGCAGCACATGCTATGTCAGAGTGTCATTGATGCGTTGCAAGCGAACCGAGTACCACACCCCCCAACCGTTGCGCCACTGTCACGCCCGGAAATTCACTAA
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| Protein seq | MEMTGKMPARVKRIRFADSQNECEVVLPQTLPSGGASSSRAVGEAAQSKPKRRRRATSAGEGPSVDEPYETKGPNLTRCSAAIAAKACRALSPVHHEKLEEIGLDAVACMSLESLEQPDLIRWLMDRTDPDTMCISINDDMKIQITPRIVRLVLGTPLGGNDIVLPSHKVVRTVHESITDELGMHKKARLSAKQLIEVIKSQKDDHRAVRYFIMVLMSKLLVRTTDFYVPKGDVGVASNLDRVAAIDWSKAVFRALSDSIRCWRQNPASSIASCVVFLAVLYLDNILPPRDIGLDLTFTPRIQMFTKDIVDKLVAADQEAGGDGTLPFGNLPLRPLESTCYANKPAGRAKGPMVEDIRAPAYTFPNMSTIIGPHFAGLPPDQRLGLLESIAEYDRQAKESAMEIERQFRLVVDKQHMLCQSVIDALQANRVPHPPTVAPLSRPEIH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g06810 | LOC_Os10g06810.1 | Chr10 | 3551237 | 3553611 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGATGACTGGGAAAATGCCGGCTAGGGTCAAGCGGATTAGGTTTGCCGACTCACAAAACGAGTGCGAGGTCGTCCTGCCCCAAACACTTCCTAGCGGCGGAGCGTCTTCCTCAAGGGCGGTCGGTGAAGCAGCACAGAGCAAGCCAAAAAGGAGACGGCGCGCTACGTCGGCCGGCGAGGGCCCATCAGTGGACGAGCCATATGAGACAAAGGGCCCTAACCTCACACGATGTAGCGCCGCTATAGCGGCGAAGGCTTGTAGAGCGCTATCTCCCGTACACCATGAGAAATTGGAGGAGATTGGACTTGATGCGGTAGCGTGCATGTCACTTGAAAGCCTTGAGCAGCCAGACCTAATACGATGGCTCATGGACAGGACTGATCCCGACACAATGTGCATTTCAATAAATGATGACATGAAGATACAGATCACCCCTCGCATTGTGAGGCTTGTCCTCGGGACCCCGCTCGGTGGAAATGACATTGTACTCCCATCCCACAAGGTTGTGCGAACCGTTCACGAAAGCATCACCGATGAATTGGGAATGCATAAGAAGGCTAGGTTATCAGCAAAACAGTTGATCGAGGTGATCAAGAGCCAGAAAGATGACCACCGGGCTGTTCGATATTTCATCATGGTACTTATGTCAAAGCTGCTAGTTCGAACTACCGATTTTTATGTGCCCAAGGGCGATGTCGGGGTCGCATCCAACCTCGACAGGGTCGCTGCTATTGACTGGTCCAAGGCTGTGTTCCGGGCTTTAAGCGACAGCATCAGGTGTTGGCGCCAAAACCCGGCATCCTCAATAGCTTCTTGTGTCGTATTCCTCGCGGTTTTATATCTGGACAACATTCTGCCACCAAGAGACATTGGGCTGGATTTAACCTTCACCCCACGTATTCAGATGTTTACCAAGGACATCGTGGATAAGCTCGTTGCTGCTGATCAGGAAGCAGGCGGGGATGGCACGCTGCCTTTTGGCAACCTCCCCCTGCGACCGTTGGAGAGTACATGCTATGCCAACAAGCCTGCCGGCAGGGCAAAGGGACCGATGGTAGAAGATATCAGGGCACCGGCATACACCTTCCCTAATATGTCTACCATCATTGGGCCACACTTCGCGGGGCTGCCCCCCGACCAGAGGCTCGGATTGTTGGAGTCCATAGCCGAGTATGACAGGCAGGCAAAAGAGAGTGCAATGGAGATCGAGCGCCAATTCAGGCTCGTTGTTGACAAGCAGCACATGCTATGTCAGAGTGTCATTGATGCGTTGCAAGCGAACCGAGTACCACACCCCCCAACCGTTGCGCCACTGTCACGCCCGGAAATTCACTAA
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| Protein seq | MEMTGKMPARVKRIRFADSQNECEVVLPQTLPSGGASSSRAVGEAAQSKPKRRRRATSAGEGPSVDEPYETKGPNLTRCSAAIAAKACRALSPVHHEKLEEIGLDAVACMSLESLEQPDLIRWLMDRTDPDTMCISINDDMKIQITPRIVRLVLGTPLGGNDIVLPSHKVVRTVHESITDELGMHKKARLSAKQLIEVIKSQKDDHRAVRYFIMVLMSKLLVRTTDFYVPKGDVGVASNLDRVAAIDWSKAVFRALSDSIRCWRQNPASSIASCVVFLAVLYLDNILPPRDIGLDLTFTPRIQMFTKDIVDKLVAADQEAGGDGTLPFGNLPLRPLESTCYANKPAGRAKGPMVEDIRAPAYTFPNMSTIIGPHFAGLPPDQRLGLLESIAEYDRQAKESAMEIERQFRLVVDKQHMLCQSVIDALQANRVPHPPTVAPLSRPEIH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g06910 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003040 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002970 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002930 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003270 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002890 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0061100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003170 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0068200 | RBH | 0 | 0.004478 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002980 | RBH | 0.0 | 0.014847 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003090 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002890 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003140 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003060 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003100 | RBH | 0.0 | 0.0 | 0.0 |
