Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g04780 | OGI:10008470 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:2299438-2300571 | ||||||||
| Gene Symbol | OsFbox527, Os_F0059 | ||||||||||
| DNA seq | TTAAATGCTGAAAACATAAGTACCTGCAACATAAGTACTTGCGTAGGGATGAATTGGCGCGATGACACAACTTTCCCAAACTTTCTTGGCCTGCAACGTATCAAGTTGGAGCATGAAGACACTGTGATCAGCCCATAGAAACATCACCTTGATATCCTGAGCATACCCCAGTTTTGTTAAATACCCTATCTTCAACCTAAACTCCGGGTTAAGAACATTCTTCAGCTCATACGTCTTCTGCAGCACCCACTTGGCAACACCTCCAGAACAGACTTTCCTCTCCCACATTTGAAGGCTGCTGCGAGACAAAGTGGCGGCGCCAAGACAATCACCTTCTGTCAGCCAGGTCTGACTGTATGGCTCGGAATCGTAGGGCCATTCAATCACGCTGAGGGTTTGCTTATCCAAATCAAACTGAAGAACGGTAAGCCAACGTTCACCATAAGCCATCCAATACAGGGCATTGCCAGCAAGTATGCCAGGATCACGAAAGAAAAACACCAAGAATGGAGCAGCTACCGATATGAGATCACTCCATTTGCCAGACTCCGAGCAGTAAACGCAGGCGAACATCTGTGTGTTGTTGCCGGCGACGCCTACCAACACCACCCTGAAGGGGCCGTCGTCGGCGGTGGCAGCAGACAGCACTGCCCCATTCCAAATGATCTTCTCCTTGCCGTCAATCTCCGGCGGAACGGCCACCTGGCGGTGGTCGCCGGTGTCGGGGACCCACACAACGATCTCATTCTTCGCCCGGTTGAAGAGGAGGAGGCGGCCATGGCGGCAGCCGTAGAAGTGCCACTGGCCGCCCTCGTCCTCGGCGAGCCGCAGCCTGAAGCACTCCCTTGGGATGAGATCCGGCGGGTCCAGAACGGACCGGAAGAAGGGGTACCCGAGGTAGTCCTCGAAGACGCCGATGAGGGGTGGTGGATTCCGGTGGCGGGCGCGGAAGCGGCGGTGGAAGGCGGGGTCGGTGACGAGGCGGCGCCAGCGCTTGCAGACGAGGGAGGCGCGGGGGAGCGAGGAGGGGCGCGGCGGGAGGTGGAGGAGGATCTCGGAGAGGAGGTCGTCGTCGTCCGGCAGGGTCACCGGCGGCGCCAGTGAGATGGCGCGGCGATGGCGGAGGCGGTTCAT
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| CDS seq | ATGAACCGCCTCCGCCATCGCCGCGCCATCTCACTGGCGCCGCCGGTGACCCTGCCGGACGACGACGACCTCCTCTCCGAGATCCTCCTCCACCTCCCGCCGCGCCCCTCCTCGCTCCCCCGCGCCTCCCTCGTCTGCAAGCGCTGGCGCCGCCTCGTCACCGACCCCGCCTTCCACCGCCGCTTCCGCGCCCGCCACCGGAATCCACCACCCCTCATCGGCGTCTTCGAGGACTACCTCGGGTACCCCTTCTTCCGGTCCGTTCTGGACCCGCCGGATCTCATCCCAAGGGAGTGCTTCAGGCTGCGGCTCGCCGAGGACGAGGGCGGCCAGTGGCACTTCTACGGCTGCCGCCATGGCCGCCTCCTCCTCTTCAACCGGGCGAAGAATGAGATCGTTGTGTGGGTCCCCGACACCGGCGACCACCGCCAGGTGGCCGTTCCGCCGGAGATTGACGGCAAGGAGAAGATCATTTGGAATGGGGCAGTGCTGTCTGCTGCCACCGCCGACGACGGCCCCTTCAGGGTGGTGTTGGTAGGCGTCGCCGGCAACAACACACAGATGTTCGCCTGCGTTTACTGCTCGGAGTCTGGCAAATGGAGTGATCTCATATCGGTAGCTGCTCCATTCTTGGTGTTTTTCTTTCGTGATCCTGGCATACTTGCTGGCAATGCCCTGTATTGGATGGCTTATGGTGAACGTTGGCTTACCGTTCTTCAGTTTGATTTGGATAAGCAAACCCTCAGCGTGATTGAATGGCCCTACGATTCCGAGCCATACAGTCAGACCTGGCTGACAGAAGGTGATTGTCTTGGCGCCGCCACTTTGTCTCGCAGCAGCCTTCAAATGTGGGAGAGGAAAGTCTGTTCTGGAGGTGTTGCCAAGTGGGTGCTGCAGAAGACGTATGAGCTGAAGAATGTTCTTAACCCGGAGTTTAGGTTGAAGATAGGGTATTTAACAAAACTGGGGTATGCTCAGGATATCAAGGTGATGTTTCTATGGGCTGATCACAGTGTCTTCATGCTCCAACTTGATACGTTGCAGGCCAAGAAAGTTTGGGAAAGTTGTGTCATCGCGCCAATTCATCCCTACGCAAGTACTTATGTTGCAGGTACTTATGTTTTCAGCATTTAA
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| Protein seq | MNRLRHRRAISLAPPVTLPDDDDLLSEILLHLPPRPSSLPRASLVCKRWRRLVTDPAFHRRFRARHRNPPPLIGVFEDYLGYPFFRSVLDPPDLIPRECFRLRLAEDEGGQWHFYGCRHGRLLLFNRAKNEIVVWVPDTGDHRQVAVPPEIDGKEKIIWNGAVLSAATADDGPFRVVLVGVAGNNTQMFACVYCSESGKWSDLISVAAPFLVFFFRDPGILAGNALYWMAYGERWLTVLQFDLDKQTLSVIEWPYDSEPYSQTWLTEGDCLGAATLSRSSLQMWERKVCSGGVAKWVLQKTYELKNVLNPEFRLKIGYLTKLGYAQDIKVMFLWADHSVFMLQLDTLQAKKVWESCVIAPIHPYASTYVAGTYVFSI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g04780 | LOC_Os10g04780.1 | Chr10 | 2299438 | 2300571 | - | MSU_osa1r7 | ||
| CDS seq | ATGAACCGCCTCCGCCATCGCCGCGCCATCTCACTGGCGCCGCCGGTGACCCTGCCGGACGACGACGACCTCCTCTCCGAGATCCTCCTCCACCTCCCGCCGCGCCCCTCCTCGCTCCCCCGCGCCTCCCTCGTCTGCAAGCGCTGGCGCCGCCTCGTCACCGACCCCGCCTTCCACCGCCGCTTCCGCGCCCGCCACCGGAATCCACCACCCCTCATCGGCGTCTTCGAGGACTACCTCGGGTACCCCTTCTTCCGGTCCGTTCTGGACCCGCCGGATCTCATCCCAAGGGAGTGCTTCAGGCTGCGGCTCGCCGAGGACGAGGGCGGCCAGTGGCACTTCTACGGCTGCCGCCATGGCCGCCTCCTCCTCTTCAACCGGGCGAAGAATGAGATCGTTGTGTGGGTCCCCGACACCGGCGACCACCGCCAGGTGGCCGTTCCGCCGGAGATTGACGGCAAGGAGAAGATCATTTGGAATGGGGCAGTGCTGTCTGCTGCCACCGCCGACGACGGCCCCTTCAGGGTGGTGTTGGTAGGCGTCGCCGGCAACAACACACAGATGTTCGCCTGCGTTTACTGCTCGGAGTCTGGCAAATGGAGTGATCTCATATCGGTAGCTGCTCCATTCTTGGTGTTTTTCTTTCGTGATCCTGGCATACTTGCTGGCAATGCCCTGTATTGGATGGCTTATGGTGAACGTTGGCTTACCGTTCTTCAGTTTGATTTGGATAAGCAAACCCTCAGCGTGATTGAATGGCCCTACGATTCCGAGCCATACAGTCAGACCTGGCTGACAGAAGGTGATTGTCTTGGCGCCGCCACTTTGTCTCGCAGCAGCCTTCAAATGTGGGAGAGGAAAGTCTGTTCTGGAGGTGTTGCCAAGTGGGTGCTGCAGAAGACGTATGAGCTGAAGAATGTTCTTAACCCGGAGTTTAGGTTGAAGATAGGGTATTTAACAAAACTGGGGTATGCTCAGGATATCAAGGTGATGTTTCTATGGGCTGATCACAGTGTCTTCATGCTCCAACTTGATACGTTGCAGGCCAAGAAAGTTTGGGAAAGTTGTGTCATCGCGCCAATTCATCCCTACGCAAGTACTTATGTTGCAGGTACTTATGTTTTCAGCATTTAA
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| Protein seq | MNRLRHRRAISLAPPVTLPDDDDLLSEILLHLPPRPSSLPRASLVCKRWRRLVTDPAFHRRFRARHRNPPPLIGVFEDYLGYPFFRSVLDPPDLIPRECFRLRLAEDEGGQWHFYGCRHGRLLLFNRAKNEIVVWVPDTGDHRQVAVPPEIDGKEKIIWNGAVLSAATADDGPFRVVLVGVAGNNTQMFACVYCSESGKWSDLISVAAPFLVFFFRDPGILAGNALYWMAYGERWLTVLQFDLDKQTLSVIEWPYDSEPYSQTWLTEGDCLGAATLSRSSLQMWERKVCSGGVAKWVLQKTYELKNVLNPEFRLKIGYLTKLGYAQDIKVMFLWADHSVFMLQLDTLQAKKVWESCVIAPIHPYASTYVAGTYVFSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.406367 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0137000 | RBH | 0.0 | 0.0 | 1.706124 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04770 | RBH | 0.169859 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0137000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001920 | RBH | 0.243871 | 2.338798 | 2.204188 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001890 | RBH | 0.0 | 0.628696 | 0.596129 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001890 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001840 | SBH | 0.019525 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001770 | SBH | 2.317656 | 1.707453 | 7.760892 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0039200 | SBH | 1.275105 | 3.129006 | 2.918844 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001950 | RBH | 0.000000 | 0.311250 | 0.607143 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0044100 | RBH | 0.484422 | 0.533518 | 1.5648945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001790 | SBH | 0.125611 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001860 | RBH | 0.718735 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001920 | SBH | 2.090048 | 3.654088 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001770 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001910 | RBH | 0.032851 | 0.385829 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001880 | SBH | 0.0 | 1.142626 | 1.420479 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001790 | RBH | 0.187474 | 1.559387 | 1.237499 |
