Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g04540 | OGI:10008110 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:2151265-2152716 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGATTGCAGTATCAGCAGTAACCGGTGAACTCTTCAGCCGGTTCATCTCCTTCCTCCTGAGCAAGTACTCGAGCCATGAAATTTCAGAGGATAAGCAGCTGGAAAGACTGCAGCAGCTGCTCCTACGAATATGCGCGGTCGTCGAGGAGGCGGACGGGCGATACATCACCAACTCTGGGATGCTGATGCAGCTGAAGGGGCTTGCAGATGCCATGTACCGAGGGCACCATGTCCTGGACATGCTCAGGTGCAGGACCTTAACTCAGGAGAATTCCATCAAGGAGGTTCAGGTTGGCAGCCCATTTCCCCCTCTCAAACGTTTTCGCGCAATTGTTGATGCTGCTGGGAAGGACAAGGCCAGGTACTTTGAGATTCATAGAACTTTGGAGATATTAGAAACAGCTGTTGATCACATGCCAGAATTTGTTGTGCTTTTGGGTGGATGCGAGCGAATGTCGCGGAGGCCATATGATGCATATCTTTACATAGACAACTTCATGTTTGGCCGTCATACTGAAAAGCAGAGGCTTCTGAATTTCCTGTTGGAATACAACCCTCCAAGTCTTCCTGCTGTTCTTCCAATCGTGGGAGGTCATGCAGTTGGGAAAAAAACTCTGATTGCACATGTATGCGCTGATGAGCGGGTTCAATCTCAGTTCTCTTCAATTTTGCATTTGAATGAAGATGATCTTTTGAGAATAGCACACAGTGATACTCTCTTGTCAGGGAAGATGTTGGTAGTTGTTGAGTTTGTTTCAGATTTGAATGAGAAAAATTGGGAGGAATTCTATACAAGTCTAGCACAAATGAATGAAGGAAGCAAGGTGATAACCATAAGCAGGTTTAGAAAATCAGAGAAACTTGGAACTGTGAAGCCAATTTTACTTGACATCCATTCACATGAAGAATTGACCTACCTTTTCAAGACACTCGCATTTGGAAGTGCAAACCCTATGGACCATCCACGATTACTGCAAGTAGCCGAAGAATTTGCCATGCAATTGCAGTTGAGAGGGTCACTTATCTCAGTGAATATTTGTGCAGATGTATTAAGATGGAATTTGGATGTCAATTTCTGGATTAGTATACTGAACAGGTGCATAACAGTGGCTGAAAAGAACTTCTCCTTGTACGGTAAGCATGTTAGGTCACTTTTTGAACAAGGTCATCGTCTAGATATCACCAACTTTGCTTCATCTTCAGCTGCTCCATTGCACATCATACCATTTGCTGGTCACAGTAGTGCACTGAAGGACTTACAAAGGGTTACATTAAGAGAACTATTACTAGATCCTAGTGTTAGACCAAAAGGTGACTTCAATCTAGTTTCATGGGAATCAAGGCTACCTCCTTATACTTCATTTATTCACTTTGTTCCAAATTATTCTCAAGATTTTCCTAAAGATAAACCCTTGTCAGGAAGGAAGCGTCGAGGAGATCCTTCCTAA
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| CDS seq | ATGGAGATTGCAGTATCAGCAGTAACCGGTGAACTCTTCAGCCGGTTCATCTCCTTCCTCCTGAGCAAGTACTCGAGCCATGAAATTTCAGAGGATAAGCAGCTGGAAAGACTGCAGCAGCTGCTCCTACGAATATGCGCGGTCGTCGAGGAGGCGGACGGGCGATACATCACCAACTCTGGGATGCTGATGCAGCTGAAGGGGCTTGCAGATGCCATGTACCGAGGGCACCATGTCCTGGACATGCTCAGGTGCAGGACCTTAACTCAGGAGAATTCCATCAAGGAGGTTCAGGTTGGCAGCCCATTTCCCCCTCTCAAACGTTTTCGCGCAATTGTTGATGCTGCTGGGAAGGACAAGGCCAGGTACTTTGAGATTCATAGAACTTTGGAGATATTAGAAACAGCTGTTGATCACATGCCAGAATTTGTTGTGCTTTTGGGTGGATGCGAGCGAATGTCGCGGAGGCCATATGATGCATATCTTTACATAGACAACTTCATGTTTGGCCGTCATACTGAAAAGCAGAGGCTTCTGAATTTCCTGTTGGAATACAACCCTCCAAGTCTTCCTGCTGTTCTTCCAATCGTGGGAGGTCATGCAGTTGGGAAAAAAACTCTGATTGCACATGTATGCGCTGATGAGCGGGTTCAATCTCAGTTCTCTTCAATTTTGCATTTGAATGAAGATGATCTTTTGAGAATAGCACACAGTGATACTCTCTTGTCAGGGAAGATGTTGGTAGTTGTTGAGTTTGTTTCAGATTTGAATGAGAAAAATTGGGAGGAATTCTATACAAGTCTAGCACAAATGAATGAAGGAAGCAAGGTGATAACCATAAGCAGGTTTAGAAAATCAGAGAAACTTGGAACTGTGAAGCCAATTTTACTTGACATCCATTCACATGAAGAATTGACCTACCTTTTCAAGACACTCGCATTTGGAAGTGCAAACCCTATGGACCATCCACGATTACTGCAAGTAGCCGAAGAATTTGCCATGCAATTGCAGTTGAGAGGGTCACTTATCTCAGTGAATATTTGTGCAGATGTATTAAGATGGAATTTGGATGTCAATTTCTGGATTAGTATACTGAACAGGTGCATAACAGTGGCTGAAAAGAACTTCTCCTTGTACGGTAAGCATGTTAGGTCACTTTTTGAACAAGGTCATCGTCTAGATATCACCAACTTTGCTTCATCTTCAGCTGCTCCATTGCACATCATACCATTTGCTGGTCACAGTAGTGCACTGAAGGACTTACAAAGGGTTACATTAAGAGAACTATTACTAGATCCTAGTGTTAGACCAAAAGGTGACTTCAATCTAGTTTCATGGGAATCAAGGCTACCTCCTTATACTTCATTTATTCACTTTGTTCCAAATTATTCTCAAGATTTTCCTAAAGATAAACCCTTGTCAGGAAGGAAGCGTCGAGGAGATCCTTCCTAA
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| Protein seq | MEIAVSAVTGELFSRFISFLLSKYSSHEISEDKQLERLQQLLLRICAVVEEADGRYITNSGMLMQLKGLADAMYRGHHVLDMLRCRTLTQENSIKEVQVGSPFPPLKRFRAIVDAAGKDKARYFEIHRTLEILETAVDHMPEFVVLLGGCERMSRRPYDAYLYIDNFMFGRHTEKQRLLNFLLEYNPPSLPAVLPIVGGHAVGKKTLIAHVCADERVQSQFSSILHLNEDDLLRIAHSDTLLSGKMLVVVEFVSDLNEKNWEEFYTSLAQMNEGSKVITISRFRKSEKLGTVKPILLDIHSHEELTYLFKTLAFGSANPMDHPRLLQVAEEFAMQLQLRGSLISVNICADVLRWNLDVNFWISILNRCITVAEKNFSLYGKHVRSLFEQGHRLDITNFASSSAAPLHIIPFAGHSSALKDLQRVTLRELLLDPSVRPKGDFNLVSWESRLPPYTSFIHFVPNYSQDFPKDKPLSGRKRRGDPS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g04540 | LOC_Os10g04540.1 | Chr10 | 2151265 | 2152716 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGATTGCAGTATCAGCAGTAACCGGTGAACTCTTCAGCCGGTTCATCTCCTTCCTCCTGAGCAAGTACTCGAGCCATGAAATTTCAGAGGATAAGCAGCTGGAAAGACTGCAGCAGCTGCTCCTACGAATATGCGCGGTCGTCGAGGAGGCGGACGGGCGATACATCACCAACTCTGGGATGCTGATGCAGCTGAAGGGGCTTGCAGATGCCATGTACCGAGGGCACCATGTCCTGGACATGCTCAGGTGCAGGACCTTAACTCAGGAGAATTCCATCAAGGAGGTTCAGGTTGGCAGCCCATTTCCCCCTCTCAAACGTTTTCGCGCAATTGTTGATGCTGCTGGGAAGGACAAGGCCAGGTACTTTGAGATTCATAGAACTTTGGAGATATTAGAAACAGCTGTTGATCACATGCCAGAATTTGTTGTGCTTTTGGGTGGATGCGAGCGAATGTCGCGGAGGCCATATGATGCATATCTTTACATAGACAACTTCATGTTTGGCCGTCATACTGAAAAGCAGAGGCTTCTGAATTTCCTGTTGGAATACAACCCTCCAAGTCTTCCTGCTGTTCTTCCAATCGTGGGAGGTCATGCAGTTGGGAAAAAAACTCTGATTGCACATGTATGCGCTGATGAGCGGGTTCAATCTCAGTTCTCTTCAATTTTGCATTTGAATGAAGATGATCTTTTGAGAATAGCACACAGTGATACTCTCTTGTCAGGGAAGATGTTGGTAGTTGTTGAGTTTGTTTCAGATTTGAATGAGAAAAATTGGGAGGAATTCTATACAAGTCTAGCACAAATGAATGAAGGAAGCAAGGTGATAACCATAAGCAGGTTTAGAAAATCAGAGAAACTTGGAACTGTGAAGCCAATTTTACTTGACATCCATTCACATGAAGAATTGACCTACCTTTTCAAGACACTCGCATTTGGAAGTGCAAACCCTATGGACCATCCACGATTACTGCAAGTAGCCGAAGAATTTGCCATGCAATTGCAGTTGAGAGGGTCACTTATCTCAGTGAATATTTGTGCAGATGTATTAAGATGGAATTTGGATGTCAATTTCTGGATTAGTATACTGAACAGGTGCATAACAGTGGCTGAAAAGAACTTCTCCTTGTACGGTAAGCATGTTAGGTCACTTTTTGAACAAGGTCATCGTCTAGATATCACCAACTTTGCTTCATCTTCAGCTGCTCCATTGCACATCATACCATTTGCTGGTCACAGTAGTGCACTGAAGGACTTACAAAGGGTTACATTAAGAGAACTATTACTAGATCCTAGTGTTAGACCAAAAGGTGACTTCAATCTAGTTTCATGGGAATCAAGGCTACCTCCTTATACTTCATTTATTCACTTTGTTCCAAATTATTCTCAAGATTTTCCTAAAGATAAACCCTTGTCAGGAAGGAAGCGTCGAGGAGATCCTTCCTAA
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| Protein seq | MEIAVSAVTGELFSRFISFLLSKYSSHEISEDKQLERLQQLLLRICAVVEEADGRYITNSGMLMQLKGLADAMYRGHHVLDMLRCRTLTQENSIKEVQVGSPFPPLKRFRAIVDAAGKDKARYFEIHRTLEILETAVDHMPEFVVLLGGCERMSRRPYDAYLYIDNFMFGRHTEKQRLLNFLLEYNPPSLPAVLPIVGGHAVGKKTLIAHVCADERVQSQFSSILHLNEDDLLRIAHSDTLLSGKMLVVVEFVSDLNEKNWEEFYTSLAQMNEGSKVITISRFRKSEKLGTVKPILLDIHSHEELTYLFKTLAFGSANPMDHPRLLQVAEEFAMQLQLRGSLISVNICADVLRWNLDVNFWISILNRCITVAEKNFSLYGKHVRSLFEQGHRLDITNFASSSAAPLHIIPFAGHSSALKDLQRVTLRELLLDPSVRPKGDFNLVSWESRLPPYTSFIHFVPNYSQDFPKDKPLSGRKRRGDPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0134700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04520 | RBH | 0.000000 | 0.421789 | 0.175657 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0134700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001750 | SBH | 0.100169 | 0.566891 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001710 | RBH | 0.000000 | 0.0 | 0.136475 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001700 | SBH | 0.132908 | 0.955265 | 0.561428 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001660 | RBH | 0.112309 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001670 | SBH | 0.349293 | 0.0 | 0.377295 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0038500 | RBH | 0.1478405 | 0.261328 | 0.0820245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001820 | RBH | 0.0 | 0.0 | 0.075564 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0042500 | RBH | 0.2240805 | 0.0920145 | 0.1671675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001690 | RBH | 0.070345 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001740 | SBH | 0.046791 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001790 | RBH | 1.444344 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001670 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001760 | RBH | 0.0 | 0.733236 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001630 | RBH | 0.000000 | 1.398935 | 0.165349 |
