Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os10g03870 OGI:10005900 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr10:1755462-1757886
Gene Symbol OsFbox517, Os_F0054
DNA seq

GTTTTTTATGGTATTATCTAATTGCAGATGAAATGAATGAACCATACATGTGTCAAGCTGAATATAGCACAAAATATTGTTATTTTTCTCTGGGTACTAAACTTTTAGCACCATGAGAAAAAAATGCAGTATGAACCATGAAACTATTAAAAGGTGACATATCTCTTGTTTGTATAGAACTAGAAAAATGTTTCCGTTGCAACGCATGGGCACTCAGTTAGTATTGAATAAAAGCAGGTAACTTATACTCCTCGTCTTTTCTCCAGTGTTTGATATGAAACTGAACGGATGTCATACCACTACGAACAAAGAAATCTTCAACACCGATGACCTGGGGATCATTCTCCAAGCATATCACTTCAACAATCTTAAGGTGCTCACATGTAAATGATCTTTCTTCAAGCTCACCAATGATTCTTTGTGGTGTTGTCCAACGATCCTATAGCAAACAAAACAGGTAAAGCTTTATTCTTGATGATATGCGTGCTTGTGAAAAATCTTTCAAGCAGGAACAATATACATTTGGAGGAAAGCAGTTACCTTCGCGAGTTTCAGAGTTAGCTTCACTAGCCTCGGTGAGTTCTGAAGGAATACAATTAGTGCATGGAAGTTTGCATCCAGGCACCATTCACCAAGAGTCAGGTTGACAACATCGACAAATTCCGGACACCATTGCGAATTGTTTGCAATCATCAGCTGCAAAAGATTTAAATGATTATACACTTCCATAATCACCAAACTTGCCCAACTAAGAGCACTAATGTCTCTTAATTTTCTGTTTGTACATTGCCTTGGAATGTCTCTTAATTTTCAAATTAATGCTAGCATAGTGTCCGTGCATTGTAACACATCCCAATTAACTATACTATAAAATATAAATGCAATAAACAATTAATCCTGAAATCTAAAATATGCATGAATATACAAGACCAAATGATCACCTATACAAATGAAATATATTCGCCGGGCACAAATGAAAATTTTCTCTATAAACATCTTACAAAACAACATGCATGTTTGCAGCTACAAAATGTCTGGACTCGGGGTGAGTGTACAACCTACAATCACCCCCAATCCCCTCTTTCAAAAAGTAAGATAAGATTATTTGTACTGATTTCAACTTAAACAATCAACCAGATATCGGAGAAGATGCATATTTGGTTGGCAACCCTGATATTGCACCCAGACTAGAACATTTGAGTCCTTGCATGAGAAATGATCTAGTTTCCTTTCGAGATCAAACTACCAACTAATAAACTTTCAAGACAGTGGGTCGATTTATGTTCAAAAAATGACCAGAGTACATGAATTGTATTGCCTTGTGGTTGATAACATTAACATCAGTTATCTTGTCGATACATAATTATTTCACGGCATAAGAATTAGCTATGAACGGTAGTTCTGCAGGTACAGGTAGTTAAAGTATAGCAATAATGAAGTGTCAAGAAGAACCAGCATTCTTAAGTTTCAGTTTTCACATTGGTACCTAAATAAACATGCATTGGTATACTATGTAATTATTAGCAATAAGCATACCTCTGCACCCTCATAATGGAACTCCAGATTTCTAACAGCAGAAAGGCCCCAGAGATACTGGCGGAGGTCATTAGCATCATAATAACCGTCGAAGTTTAATGCATCAAATGTAACCGATACTGATGCAGTCACTAGTAATGGCATGTCCTTTAGTACAGCTTTGGGATACTCAAGACCAGACAAGGTCAGAGAAGTAAGATTTGGAGTAGAAATAGACATCTCCTTCACCGTGTATAATTCAGTTGCATCGACGGTCAAAACCTTCAGTGTCTGGGAGGAGATCTCACCATCCCAAATGAAGCATTGATGTAATAAGAGATCTTCCAGTAATGGACAGCCCGTCTCAATTTGCTCGAAGAAACCTTTGCGTAAGTACACATGGGAGAACTCAATTCTTCTCAGGTAGAATGAAGTAAACACTGAGTGATCAAGATCCAATGGGAAGAAGAACACGGCAACCTCTAGAATCCTGGCCTGCTTCTGCAAAGCATGGCCAATCCACCTGTTAGCTTCTTCATTAGAAGCCTTGTATCCATCCAATCTGTCCGGCATGGCGTATTTGAGCAAGAATGTGTCTATCACGGAGGCAGGATCACGGAACTCCAGCAGCCGGTTAACAAACCTCTTGAACGGCACCACGGGCCCTTGGTATCCGATGGAATCAAACTCAACGAAGTCGGCGTTGATGCACGGCACGGTGTGCCAGAGGTTGCGCCACCGCCGCGACAGCACGCACGTCTGCACGGCCTGGCGCGCGTTCAGGAAGGACATGATGCGGTGGAGGATTTCATCGGGGAGGTCGCTGAGCCTGTCCCTGCCGGCGGCGTCCTCCATTGGCGGCCGAGCACGCAGGGGCATTTCGTCGAACAGGTGGTGCGCGTGGGGAGCT

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CDS seq

ATGCCCCTGCGTGCTCGGCCGCCAATGGAGGACGCCGCCGGCAGGGACAGGCTCAGCGACCTCCCCGATGAAATCCTCCACCGCATCATGTCCTTCCTGAACGCGCGCCAGGCCGTGCAGACGTGCGTGCTGTCGCGGCGGTGGCGCAACCTCTGGCACACCGTGCCGTGCATCAACGCCGACTTCGTTGAGTTTGATTCCATCGGATACCAAGGGCCCGTGGTGCCGTTCAAGAGGTTTGTTAACCGGCTGCTGGAGTTCCGTGATCCTGCCTCCGTGATAGACACATTCTTGCTCAAATACGCCATGCCGGACAGATTGGATGGATACAAGGCTTCTAATGAAGAAGCTAACAGGTGGATTGGCCATGCTTTGCAGAAGCAGGCCAGGATTCTAGAGGTTGCCGTGTTCTTCTTCCCATTGGATCTTGATCACTCAGTGTTTACTTCATTCTACCTGAGAAGAATTGAGTTCTCCCATGTGTACTTACGCAAAGGTTTCTTCGAGCAAATTGAGACGGGCTGTCCATTACTGGAAGATCTCTTATTACATCAATGCTTCATTTGGGATGGTGAGATCTCCTCCCAGACACTGAAGGTTTTGACCGTCGATGCAACTGAATTATACACGGTGAAGGAGATGTCTATTTCTACTCCAAATCTTACTTCTCTGACCTTGTCTGGTCTTGAGTATCCCAAAGCTGTACTAAAGGACATGCCATTACTAGTGACTGCATCAGTATCGGTTACATTTGATGCATTAAACTTCGACGGTTATTATGATGCTAATGACCTCCGCCAGTATCTCTGGGGCCTTTCTGCTGTTAGAAATCTGGAGTTCCATTATGAGGGTGCAGAGCTGATGATTGCAAACAATTCGCAATGGTGTCCGGAATTTGTCGATGTTGTCAACCTGACTCTTGGTGAATGGTGCCTGGATGCAAACTTCCATGCACTAATTGTATTCCTTCAGAACTCACCGAGGCTAGTGAAGCTAACTCTGAAACTCGCGAAGGATCGTTGGACAACACCACAAAGAATCATTGGTGAGCTTGAAGAAAGATCATTTACATGTGAGCACCTTAAGATTGTTGAAGTGATATGCTTGGAGAATGATCCCCAGGTCATCGGTGTTGAAGATTTCTTTGTTCGTAGTGGTATGACATCCGTTCAGTTTCATATCAAACACTGGAGAAAAGACGAGGAGTATAAGTTACCTGCTTTTATTCAATACTAA

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Protein seq

MPLRARPPMEDAAGRDRLSDLPDEILHRIMSFLNARQAVQTCVLSRRWRNLWHTVPCINADFVEFDSIGYQGPVVPFKRFVNRLLEFRDPASVIDTFLLKYAMPDRLDGYKASNEEANRWIGHALQKQARILEVAVFFFPLDLDHSVFTSFYLRRIEFSHVYLRKGFFEQIETGCPLLEDLLLHQCFIWDGEISSQTLKVLTVDATELYTVKEMSISTPNLTSLTLSGLEYPKAVLKDMPLLVTASVSVTFDALNFDGYYDANDLRQYLWGLSAVRNLEFHYEGAELMIANNSQWCPEFVDVVNLTLGEWCLDANFHALIVFLQNSPRLVKLTLKLAKDRWTTPQRIIGELEERSFTCEHLKIVEVICLENDPQVIGVEDFFVRSGMTSVQFHIKHWRKDEEYKLPAFIQY

Function MEIOTIC F-BOX protein MOF [UniProtKB/Swiss-Prot:Q7X7A4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os10g03870 LOC_Os10g03870.1 Chr10 1755462 1757886 - MSU_osa1r7
CDS seq

ATGCCCCTGCGTGCTCGGCCGCCAATGGAGGACGCCGCCGGCAGGGACAGGCTCAGCGACCTCCCCGATGAAATCCTCCACCGCATCATGTCCTTCCTGAACGCGCGCCAGGCCGTGCAGACGTGCGTGCTGTCGCGGCGGTGGCGCAACCTCTGGCACACCGTGCCGTGCATCAACGCCGACTTCGTTGAGTTTGATTCCATCGGATACCAAGGGCCCGTGGTGCCGTTCAAGAGGTTTGTTAACCGGCTGCTGGAGTTCCGTGATCCTGCCTCCGTGATAGACACATTCTTGCTCAAATACGCCATGCCGGACAGATTGGATGGATACAAGGCTTCTAATGAAGAAGCTAACAGGTGGATTGGCCATGCTTTGCAGAAGCAGGCCAGGATTCTAGAGGTTGCCGTGTTCTTCTTCCCATTGGATCTTGATCACTCAGTGTTTACTTCATTCTACCTGAGAAGAATTGAGTTCTCCCATGTGTACTTACGCAAAGGTTTCTTCGAGCAAATTGAGACGGGCTGTCCATTACTGGAAGATCTCTTATTACATCAATGCTTCATTTGGGATGGTGAGATCTCCTCCCAGACACTGAAGGTTTTGACCGTCGATGCAACTGAATTATACACGGTGAAGGAGATGTCTATTTCTACTCCAAATCTTACTTCTCTGACCTTGTCTGGTCTTGAGTATCCCAAAGCTGTACTAAAGGACATGCCATTACTAGTGACTGCATCAGTATCGGTTACATTTGATGCATTAAACTTCGACGGTTATTATGATGCTAATGACCTCCGCCAGTATCTCTGGGGCCTTTCTGCTGTTAGAAATCTGGAGTTCCATTATGAGGGTGCAGAGCTGATGATTGCAAACAATTCGCAATGGTGTCCGGAATTTGTCGATGTTGTCAACCTGACTCTTGGTGAATGGTGCCTGGATGCAAACTTCCATGCACTAATTGTATTCCTTCAGAACTCACCGAGGCTAGTGAAGCTAACTCTGAAACTCGCGAAGGATCGTTGGACAACACCACAAAGAATCATTGGTGAGCTTGAAGAAAGATCATTTACATGTGAGCACCTTAAGATTGTTGAAGTGATATGCTTGGAGAATGATCCCCAGGTCATCGGTGTTGAAGATTTCTTTGTTCGTAGTGGTATGACATCCGTTCAGTTTCATATCAAACACTGGAGAAAAGACGAGGAGTATAAGTTACCTGCTTTTATTCAATACTAA

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Protein seq

MPLRARPPMEDAAGRDRLSDLPDEILHRIMSFLNARQAVQTCVLSRRWRNLWHTVPCINADFVEFDSIGYQGPVVPFKRFVNRLLEFRDPASVIDTFLLKYAMPDRLDGYKASNEEANRWIGHALQKQARILEVAVFFFPLDLDHSVFTSFYLRRIEFSHVYLRKGFFEQIETGCPLLEDLLLHQCFIWDGEISSQTLKVLTVDATELYTVKEMSISTPNLTSLTLSGLEYPKAVLKDMPLLVTASVSVTFDALNFDGYYDANDLRQYLWGLSAVRNLEFHYEGAELMIANNSQWCPEFVDVVNLTLGEWCLDANFHALIVFLQNSPRLVKLTLKLAKDRWTTPQRIIGELEERSFTCEHLKIVEVICLENDPQVIGVEDFFVRSGMTSVQFHIKHWRKDEEYKLPAFIQY

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.103508

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0128200 RBH 0.0 0.0 0.402100
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g03780 SBH 0.245913 0.266052 0.214727
Nipponbare | IRGSP 1.0 | RAP-db Os10g0128200 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0001320 RBH 0.033080 2.588777 0.220496
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0001360 SBH 0.042566 0.000000 0.567503
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0001380 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0001290 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0001290 RBH 1.388836 0.000000 1.544483
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0031800 SBH 0.394214 1.1757945 0.7663015
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0001420 RBH 0.049247 0.031967 0.160748
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0034200 RBH 2.079148 2.0945665 7.0703795
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0001310 RBH 0.0 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0001410 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0001340 SBH 0.0 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0001220 SBH 0.000000 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0001400 RBH 0.000000 2.183259 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G001360 RBH 0.000000 0.963509 0.293104
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0001260 RBH 0.0 3.873414 1.278980
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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