Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g01760 | OGI:10002330 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:488939-489472 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGAGTAGTAGAGAGAGTTAGAGAGTAGGCTGGTATGTTCTATAAATAAATTAACTCCAACAAGGTCGACGGAGACCTGGGCGGCGATGGCGAGGATGTCGGCGCAGGAGACGACGCCCGGGCATGCCTTGTCGAGCTCGCACTTGATGTCGTCGACGACGTCGAACCCCCGGGCGGAGTTGTCGTTGGCCGGGACGCGCTTCTCGGTGTGGATCCCGGACGGCAGGTCCTCGTCGAGGAGGATGGAGGCGTCGCAGCCGTTGACGAAGCAGTCGTGGAAGTGGAGGCGGATGAGGGAGGCCGGGATGCGCGGGTCGGCGACGCGGGCGTCCTGGATCACGCGCCGCACCACGTCCTGCGCGCTGGGGCACGTCTCGTCGTAGAATCCGGCGCTGAGGCCGCCGCCGCCGCCGCCGGAGCCGGAGCTACTAGCAGGCCAGGCATTGGCTGATGAGTGGCTGATCAGCGCTGCTGCGAGCAGTATCACCAACACTAGGAGAAGAGACGAGGTGGAGGAAGCTGGTGCAGCCAT
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| CDS seq | ATGGCTGCACCAGCTTCCTCCACCTCGTCTCTTCTCCTAGTGTTGGTGATACTGCTCGCAGCAGCGCTGATCAGCCACTCATCAGCCAATGCCTGGCCTGCTAGTAGCTCCGGCTCCGGCGGCGGCGGCGGCGGCCTCAGCGCCGGATTCTACGACGAGACGTGCCCCAGCGCGCAGGACGTGGTGCGGCGCGTGATCCAGGACGCCCGCGTCGCCGACCCGCGCATCCCGGCCTCCCTCATCCGCCTCCACTTCCACGACTGCTTCGTCAACGGCTGCGACGCCTCCATCCTCCTCGACGAGGACCTGCCGTCCGGGATCCACACCGAGAAGCGCGTCCCGGCCAACGACAACTCCGCCCGGGGGTTCGACGTCGTCGACGACATCAAGTGCGAGCTCGACAAGGCATGCCCGGGCGTCGTCTCCTGCGCCGACATCCTCGCCATCGCCGCCCAGGTCTCCGTCGACCTTGTTGGAGTTAATTTATTTATAGAACATACCAGCCTACTCTCTAACTCTCTCTACTACTCATGA
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| Protein seq | MAAPASSTSSLLLVLVILLAAALISHSSANAWPASSSGSGGGGGGLSAGFYDETCPSAQDVVRRVIQDARVADPRIPASLIRLHFHDCFVNGCDASILLDEDLPSGIHTEKRVPANDNSARGFDVVDDIKCELDKACPGVVSCADILAIAAQVSVDLVGVNLFIEHTSLLSNSLYYS |
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| Function | Peroxidase 54 [UniProtKB/Swiss-Prot:Q9FG34] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g01760 | LOC_Os10g01760.1 | Chr10 | 488939 | 489472 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTGCACCAGCTTCCTCCACCTCGTCTCTTCTCCTAGTGTTGGTGATACTGCTCGCAGCAGCGCTGATCAGCCACTCATCAGCCAATGCCTGGCCTGCTAGTAGCTCCGGCTCCGGCGGCGGCGGCGGCGGCCTCAGCGCCGGATTCTACGACGAGACGTGCCCCAGCGCGCAGGACGTGGTGCGGCGCGTGATCCAGGACGCCCGCGTCGCCGACCCGCGCATCCCGGCCTCCCTCATCCGCCTCCACTTCCACGACTGCTTCGTCAACGGCTGCGACGCCTCCATCCTCCTCGACGAGGACCTGCCGTCCGGGATCCACACCGAGAAGCGCGTCCCGGCCAACGACAACTCCGCCCGGGGGTTCGACGTCGTCGACGACATCAAGTGCGAGCTCGACAAGGCATGCCCGGGCGTCGTCTCCTGCGCCGACATCCTCGCCATCGCCGCCCAGGTCTCCGTCGACCTTGTTGGAGTTAATTTATTTATAGAACATACCAGCCTACTCTCTAACTCTCTCTACTACTCATGA
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| Protein seq | MAAPASSTSSLLLVLVILLAAALISHSSANAWPASSSGSGGGGGGLSAGFYDETCPSAQDVVRRVIQDARVADPRIPASLIRLHFHDCFVNGCDASILLDEDLPSGIHTEKRVPANDNSARGFDVVDDIKCELDKACPGVVSCADILAIAAQVSVDLVGVNLFIEHTSLLSNSLYYS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.143827 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0107000 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0107000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0000360 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0000360 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000340 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000340 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000320 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0009800 | RBH | 0 | 0.1929195 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000340 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0008900 | RBH | 0 | 0.7271 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0000330 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000350 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0000340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0000280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0000330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000330 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000330 | RBH | 0.0 | 0.0 | 0.0 |
