Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g01560 | OGI:10002060 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:372226-375691 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATTTGTGATGATTCACTGAGATGTATTTATCCGAGAAGTTACAAATTTGTGATTCATTGTTTGGATTTGTGATGTATTTGAGTAATTTCTTAGGATATTGTGATGTATTTGATTTGTGTGTATAAGTAACTTTATGATTTGTGAGGTGGATTTGGTGTTGTGAATTTGGGATGTTAGTTAGATTTGGGGATTTGCCTACTTGATTCGGGAGAAAATAAAAAAAAAGAAAAAGAAAAAGGGACCATCTGCACTACCGCTATTGTCTGTTTAGTCCCGGTTGATCCCTTCTTTTTAGTCCTGGTTGGTGGCTAAGGATACATCTTTAGTCCCGGTTAGTCCCGGATCCTTACTCCCGGTTGGAAAACCGGGATTAAATGGATATCCAACCGGGAGTAAAGATGGTTTCTCCACGAGTGTAGGGTGATTTGTGAAACCAGCTAATTATAATTTAAATCGATAAATAAAAGAATTAGTGATGATTAGCGCTTGGGTGGGAGGCGGGAGGAGTGGGTGGAGGTGGAGGTGGTGGAGTAGTCGTCGGTGTAGTCGCCGCTGTCGAAGGCCACCTGCCGATGCCGCGAGATCTCCGATGAGGCGGAGAAGTCGTCGTCGTGGTGGTGGTCCAGCGAGAGCGAGGCGTCCCCCTCCAGCGCCCTCACGATCTGGCTCATCTTGGGCCGCTGCCGCGCCGAGTGCCGGATGCTCGCCGCCGCGCACGCCGCCATCCTCTCCACCTCCACCGCCGAGTACTCCCCGCCCAGCCGCGAGTCCACCAGCTCCCGGATTAATCCTCCTTCCTCGCCGCCGGCGACCAGCAAGCGCGCCAGCACCGGCCTCGCCCAGTCCACGAGGCTGTCCTCCATGTAGTTGGAGGTGTCGACGGGCCGCCGCCCGGTGAGGAGCTCCAGCAGCATGACGCCGAAGGAGAAGACGTCGGACTTCTCGGTGAGCTTGCCGGTGGAGGCGTACTCGGGGGCCAGGTAGCCGAAGGTGCCCATGACGCGGGTGGAGACGTGGGTGTTGGTGTCGGTGGTGAGCTTGGCGAGGCCGAAGTCGGCGACCATGGCCTCGTAGTTGGCGTCCAGGAGGATGTTGGCCGCCTTGATGTCGCGGTGGATGATCCGCGGGTGGCAGTCTTCGTGGAGGTAGGCGAGACCCTTGGCCGACCCCAGCGCGATCCTGTGCCGCGCCGACCAGTCTAGAACTCGATCGCCATTGCCGCCTCTATAGAGGTGGTGCTCGAGGGTGCCGTTGGGGACGAACTCGTAGACGAGCATGCGCTGGTTGGCGGCGATGCAGTATCCCACCAGAGACACGAGGTGGCGGTGGTGGACGCGGCTGATGATGTCCACCTCCGCCTGGAACTCCCGCTCCCCCTGCCCGCTCCCGGACTTGAGCTGCTTCACCGCCACCTCCTTCCCGTTCCCGGCGAGCACCCCCTTGTACACGTACCCGAACCCTCCCTGCCCCAGCAGGTTCGCCGCCGAGAACCCCGACGTCGCCGCCGCCAGCTCCTCGTACGAGAAGGAGCTCTTGGAGAAACCCAGCGCCACGTTCGGCGACGGCGGCGGCAGCGCCGGACCGTACGGTCCCGACGAGTACCCCATCCCCATCTCGCCGCTGAAACCCCCCGCCGACGATGACATGTGCCAGCCGGGCGGCGGCGGAGGTGGGATGCTGTAGTTGCTGCTGCCGTGCTGCTGCCACATGGGAGGCAGGCCGCCTGTGGCGTAGTACACGTTGCCCTTCTCGTCGGTGAAGAAGGGCATGTTCGGCGGCGGCGGCCGCTTCTTCTTCTTCGTTATCTTTATACAGCAGCACACCACGATGGCCACCACACCCGCCAACACCGCAACCATCGCCACCACAAATAACCCCACAAACACGCCGGCGGTCACATCACCGCGATACCGCCCGGACTCTCCTCGAGAGGACCCGCCGCTCTTCCTCTCCGCTGGCGCCGAAGGCGTAGTCGTAGACTCCGACGATGATTCCGACGATGGTTGCGCTTGCGTGGAAGATGAAACGCCGCCAGCTGATTTTGGTGGCGCGTTCGTCGATGCTGGTGGCGGCGGCGATGATGGGGAGGGAGGTGAGGGTGATTTTGACAACGACGAAGACGGCGACGGTGCTGACGGGGTGGTGGAGTTGGCCGACGACGGAGACGACTCCGGCGAGGCTGCCATTACCTAGCTAGGGCCCACCCCGGCCCCTCTCTCTCAGAGACCTTAATTTGTACCTCTAATAATAATTACTTAATTACCTCTAATAAATAAGAACACAATTGAAAAAATTTGTGAACCCACCCCTGCAAAAAGTTAAATTTAATTAATCAATAACGGATAAAATTAGGACAGGTGAAAAATTGTTGTGAGTTGATTTGTTCATGTTACCCCTCCGTTACAAGTCGTTTTAACTTTATTGTAATGGTATATTGACATCATGAGAAAAACTCACCTAGCATATGTTTAGCTAAGTTGATGCACTAAATACTAAATTGTCAAGTTCTTATACTAGAGTGCACTCACTTATCAAATTATTGCACTCGAACGTTTTAATTCTTAAGTTCTTGCACTATATCATACACACCCGCCAAGTTGTTGTACCGTGAGTGTAATATATTCTTTTTCTTACTTCAACTTAAAACATAGTAACATATTCAATATATTGTAAAAATACATTTAATGTTATATTTAATGAAACTTATTTGGTGTAGCTGATATTGCTAAATTTATGTATAAATTTAGTCAAATCTAAATAAAATTTGACTATGAAAAATGTTAAAGCAATTTATAATATAAAATAGAGGGAGTATCTTATGTCATTAAAGTGAACGGTTTAATTGAATGTGTGGAGGTGCATCACATATTTACGTGCATTCTTATACTCCCTCCATTTCAAATTATTAAGTTTCTTTTGATTTTTTTTCTTTTTGCAAATATTTTAAAGTTTAACTAAATTTAAATGAAAAAAACATAGTAGTAACATTTTTAACACCAAACAAATATACTACCAAAATATATTAAATGTTAGGTTTAATGAAACTAATTTTTGTGTTATAAGAGTTGTTACAGTTCTCTATAAACTTGATCAAATTTAACTTTGAAAAAAAGTCGAAACCACTTATAATATGAAATAGATAAAGTATTTCATAAACGAAAGGCAATAATCAAAGCATGTGAATCAAACGCATGAGCAAATCACCATTTAATTTGAGATACAAATGTCAAGGGATCAATACACATGTCGTCCGCACATCAAAACATTAGAGAAACATGTCACATGAACGCTAGATCAACAATCATGCAAGTTTCAACCAAATGCAATAAAAAACAACTTTTTTATGTATTGTGATGGGGGTAATGTACCTTATCCTTTCTCCGTGATGATTAGATGTTGAAGGAGAAGGAGAAGGGGTCGAAGGCGAATTGGGGGCAACAGGGCCAAAGGGAAGAGGGTGACACGC
More
|
||||||||||
| CDS seq | ATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGGCCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAA
More
|
||||||||||
| Protein seq | MAASPESSPSSANSTTPSAPSPSSSLSKSPSPPSPSSPPPPASTNAPPKSAGGVSSSTQAQPSSESSSESTTTPSAPAERKSGGSSRGESGRYRGDVTAGVFVGLFVVAMVAVLAGVVAIVVCCCIKITKKKKRPPPPNMPFFTDEKGNVYYATGGLPPMWQQHGSSNYSIPPPPPPGWHMSSSAGGFSGEMGMGYSSGPYGPALPPPSPNVALGFSKSSFSYEELAAATSGFSAANLLGQGGFGYVYKGVLAGNGKEVAVKQLKSGSGQGEREFQAEVDIISRVHHRHLVSLVGYCIAANQRMLVYEFVPNGTLEHHLYRGGNGDRVLDWSARHRIALGSAKGLAYLHEDCHPRIIHRDIKAANILLDANYEAMVADFGLAKLTTDTNTHVSTRVMGTFGYLAPEYASTGKLTEKSDVFSFGVMLLELLTGRRPVDTSNYMEDSLVDWARPVLARLLVAGGEEGGLIRELVDSRLGGEYSAVEVERMAACAAASIRHSARQRPKMSQIVRALEGDASLSLDHHHDDDFSASSEISRHRQVAFDSGDYTDDYSTTSTSTHSSRLPPKR |
||||||||||
| Function | Proline-rich receptor-like protein kinase PERK4 [UniProtKB/Swiss-Prot:Q9ZNQ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g01560 | LOC_Os10g01560.1 | Chr10 | 372226 | 375691 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGGCCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAA
More
|
|||||||
| Protein seq | MAASPESSPSSANSTTPSAPSPSSSLSKSPSPPSPSSPPPPASTNAPPKSAGGVSSSTQAQPSSESSSESTTTPSAPAERKSGGSSRGESGRYRGDVTAGVFVGLFVVAMVAVLAGVVAIVVCCCIKITKKKKRPPPPNMPFFTDEKGNVYYATGGLPPMWQQHGSSNYSIPPPPPPGWHMSSSAGGFSGEMGMGYSSGPYGPALPPPSPNVALGFSKSSFSYEELAAATSGFSAANLLGQGGFGYVYKGVLAGNGKEVAVKQLKSGSGQGEREFQAEVDIISRVHHRHLVSLVGYCIAANQRMLVYEFVPNGTLEHHLYRGGNGDRVLDWSARHRIALGSAKGLAYLHEDCHPRIIHRDIKAANILLDANYEAMVADFGLAKLTTDTNTHVSTRVMGTFGYLAPEYASTGKLTEKSDVFSFGVMLLELLTGRRPVDTSNYMEDSLVDWARPVLARLLVAGGEEGGLIRELVDSRLGGEYSAVEVERMAACAAASIRHSARQRPKMSQIVRALEGDASLSLDHHHDDDFSASSEISRHRQVAFDSGDYTDDYSTTSTSTHSSRLPPKR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.510534 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0104800 | RBH | 0.0 | 0.0 | 2.045843 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g12570 | SBH | 0.0 | 0.000000 | 0.630815 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0104800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0000260 | RBH | 0.0 | 0.0 | 1.326447 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0000260 | RBH | 0.0 | 0.0 | 0.707347 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000250 | RBH | 0.0 | 0.0 | 3.361494 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000270 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000220 | RBH | 0.0 | 0.0 | 1.432789 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0008300 | RBH | 0 | 0.0099985 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000240 | RBH | 0.0 | 0.0 | 0.740487 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0007400 | RBH | 0 | 0.0235835 | 0.014592 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0000240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0000250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0000220 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0000230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000270 | RBH | 0.0 | 0.0 | 0.485763 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000270 | RBH | 0.0 | 0.0 | 7.283067 |
