Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g39780 | OGI:09066660 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:22809904-22811004 | ||||||||
| Gene Symbol | CYP19-3, OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b | ||||||||||
| DNA seq | TTCCTCCTCATCAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGTTCCAGGTGGGTTCTTCCTCCTTTGCGTGCTGCTGCTTTAATTTGGTGCGCACATATCGAAGGCTTTTAGGCGTCGAGTAATCAAAAGGCCTAATGAGCTCAAAGCTTGTGCAAGATCGATCGATTTTGTCAATTCTCCATCCACACCTTTGCCGCCTCCATTAGGCATCTGGGATGGATGGATGTTGTCCACACTTCACTTGTTCTTCTTTATCAATCTTTGTTTGCTTCTACTTCACTAGTAATAGCATGTTATGGAGATTGTATATATGTAATGGAGTAGTAGGAGTATTCGTTCGATTTGATTAACTGAACTGAACTAGCCTCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTGCTCTGAAA
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| CDS seq | ATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGA
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| Protein seq | MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN |
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| Function | Peptidyl-prolyl cis-trans isomerase CYP19-3 [UniProtKB/Swiss-Prot:Q38867] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g39780 | LOC_Os09g39780.1 | Chr09 | 22809907 | 22811004 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGA
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| Protein seq | MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g39780 | LOC_Os09g39780.2 | Chr09 | 22809904 | 22811004 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGA
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| Protein seq | MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.953863 | 1.767642 | 1.251995 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0571400 | RBH | 4.471990 | 2.668119 | 4.973686 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g44330 | RBH | 1.247257 | 1.104933 | 1.180276 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0571400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0020540 | RBH | 0.860773 | 6.773281 | 4.461530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0020590 | RBH | 0.0 | 1.390201 | 3.324118 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0020810 | RBH | 1.638700 | 16.976473 | 4.535461 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0020560 | RBH | 0.130253 | 1.129095 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0020790 | RBH | 2.855393 | 14.234279 | 5.872883 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0355400 | SBH | 4.3083225 | 7.5194335 | 5.3471735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001570 | SBH | 50.169292 | 74.393593 | 59.264416 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0343400 | SBH | 4.487178 | 4.359064 | 14.8877145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0020630 | RBH | 0.287047 | 0.113242 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0020370 | RBH | 0.968929 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0020380 | RBH | 3.128458 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0020410 | RBH | 0.0 | 0.0 | 1.527603 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0020550 | RBH | 0.000000 | 3.683050 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G020940 | RBH | 0.145439 | 20.802145 | 3.484683 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0020680 | RBH | 0.442915 | 31.156353 | 5.751509 |
