Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g39710 | OGI:09066700 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:22785037-22786762 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCGCCTATATTTTTCAATATTGTGGTTGATATGTTAGCGGTTCTCATTGAGAGAGCTAAAGGCGATGGTCAAATTAGAGGAGTCATTCCATATTTAGTGGACGATGGTTTGTCCATTCTACAATATGCTGATGATACAGTAATTTTTCTAGATCATGACCTTGAACAGGCCAAAAATATGAAAGCCATCCTATGTGTGTTCGAACAGCTCTCAGGGCTGAAAATAAACTTTCATAAAAGTGAGATTTTTTGTTTTGGGAAAGCCAAGGAAGTGGAGGATCAATATAGATAACTATTTGGTTGTAATTCTGGATCTTTCCCGTTTAGATATCTTGGTATTCCTATTCATTATCAGAAACTCCGGAATGTTGATTGGAAAGGAGTTGAAGATAGATTTGAGAGGAAACTCAGCACATGGAAAGGCAAAAACATGTCATATGGTGGGAGATTGGCCCTTCTAAACTCAGTTCTTTTGAGCCTTCCCTTGTTTATGTTATCCTTCTTTGAAATTCCACGAGGTGTGCTTCAAAGACTGGATTACTTTAGGTCATGTTTTTTTTGGAGTAATGATGACCGTAAAAGAAAATATAGACTAACTAAGTGGGAAAACATATGTCGACCAAAAGATCAAGGTGGACCTAGGTGTCCATAACCTTGATATAAAAAATAGCTGCTTATTAAGCAAATGGCTTTTCCAGTTGTTTAATGGTGAAGGCCTATGGCAAGACTTTTTGCGAAATAAATACTTAAAGGGTAAACCTCTTTCTGGTATGTCCAGCAAGATAGGTATTTCTCAGTTCTGGGCCGGTTTAATGAAAGTCAAAGACCAATTTCTTAGGTTTGGTTCTTTTAGATGTGGCAATGGGACAAACATAAGATTTTGGGAAGACACGTGGTTGGGATCACGTGCTTTCAAAGATCAATACCCTACATTATATAATGTGGCTCGAAAGAAGCAGTCTACTGTGCAGAGGTCATGAGCACAACGCCGCTAAATATCTCTTTTAGAAGAGCTATTGTTGGCCAAAAGCTAATCGAGTGGAACGATTTGATCCTCATGCTAGCTAATATAACTCTGTCAAATGAAAAGGACTGCTTTGTATGGTCGCTCCATAAGAATGGTCAATTTTCCATCAAATCTATGTATGCCGCGATCATGAACTGTAATGTTCGGATCAAAAAGAGAATTCTGTGGGACTTGAAAATTCCACTAAAGATCAAGGTCTTTATGTGGTTTCTTCACAAGAAAGTAATTCTAACAAAAGATAACCTGGCTAAAAGAAAATGGGGGGAGACAAACATTGTTCTTTCTGCTATGCACAAGAGACAATCCAACATCTTTTCTTTGAGTGTCATGTCGCTCAGTTTGTTTGGAGATGTGTGCTTTTTGCTTTTAATATCCCCCACCCCGTAATGCCAAAAACATTTTCGGTAATTGGCTTAGAGGGGTAACTAGGTCCATTAAGAAGATGATTCTAATTGGAGCTAGTGCTGTATGTTGGTCAATTTGGCATTGTCGCAATGATAAAGTTTTTAATGGTAAACAATTATCTAACCCTATGCAGGTTATCTTCATGTCTTCCTACTGGCTCCACTTTTGGTCTACAATGCTACCACAGGAGGAGCAGGATACTATGCGCAATGGTGCTACACTCTTGGAATCGGTAGCCAAGGATCTCTTATTCCACTATGGGTGGCGTAGTTCCATAAGAATTGCTAGCTAA
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| CDS seq | ATGTCGCCTATATTTTTCAATATTGTGGTTGATATGTTAGCGGTTCTCATTGAGAGAGCTAAAGGCGATGGTCAAATTAGAGGAGTCATTCCATATTTAGTGGACGATGGTTTGTCCATTCTACAATATGCTGATGATACAGTAATTTTTCTAGATCATGACCTTGAACAGGCCAAAAATATGAAAGCCATCCTATGTGTGTTCGAACAGCTCTCAGGGCTGAAAATAAACTTTCATAAAAATATCTTGGTATTCCTATTCATTATCAGAAACTCCGGAATGTTGATTGGAAAGGAGTTGAAGATAGATTTGAGAGGAAACTCAGCACATGGAAAGGCAAAAACATGTCATATGTTGTTTAATGGTGAAGGCCTATGGCAAGACTTTTTGCGAAATAAATACTTAAAGGGTAAACCTCTTTCTGGTATGTCCAGCAAGATAGGTATTTCTCAGTTCTGGGCCGGTTTAATGAAAGTCAAAGACCAATTTCTTAGGTTTGGTTCTTTTAGATGTGGCAATGGGACAAACATAAGATTTTGGGAAGACACGTGGTTGGGATCACGTGCTTTCAAAGATCAATACCCTACATTATATAATGTGGCTCGAAAGAAGCAGTCTACTGTGCAGAGAAGAGCTATTGTTGGCCAAAAGCTAATCGAGTGGAACGATTTGATCCTCATGCTAGCTAATATAACTCTGTCAAATGAAAAGGACTGCTTTGTATGGTCGCTCCATAAGAATGGTCAATTTTCCATCAAATCTATGTATGCCGCGATCATGAACTGTAATGTTCGGATCAAAAAGAGAATTCTGTGGGACTTGAAAATTCCACTAAAGATCAAGGTCTTTATGTGGTTTCTTCACAAGAAAGTAATTCTAACAAAAGATAACCTGGCTAAAAGAAAATGGGGGGAGACAAACATTGTTCTTTCTGCTATGCACAAGAGACAATCCAACATCTTTTCTTTGAGTGTCATGTCGCTCAGTTTGTTTGGAGATGTTATCTTCATGTCTTCCTACTGGCTCCACTTTTGGTCTACAATGCTACCACAGGAGGAGCAGGATACTATGCGCAATGGTGCTACACTCTTGGAATCGGTAGCCAAGGATCTCTTATTCCACTATGGGTGGCGTAGTTCCATAAGAATTGCTAGCTAA
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| Protein seq | MSPIFFNIVVDMLAVLIERAKGDGQIRGVIPYLVDDGLSILQYADDTVIFLDHDLEQAKNMKAILCVFEQLSGLKINFHKNILVFLFIIRNSGMLIGKELKIDLRGNSAHGKAKTCHMLFNGEGLWQDFLRNKYLKGKPLSGMSSKIGISQFWAGLMKVKDQFLRFGSFRCGNGTNIRFWEDTWLGSRAFKDQYPTLYNVARKKQSTVQRRAIVGQKLIEWNDLILMLANITLSNEKDCFVWSLHKNGQFSIKSMYAAIMNCNVRIKKRILWDLKIPLKIKVFMWFLHKKVILTKDNLAKRKWGETNIVLSAMHKRQSNIFSLSVMSLSLFGDVIFMSSYWLHFWSTMLPQEEQDTMRNGATLLESVAKDLLFHYGWRSSIRIAS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g39710 | LOC_Os09g39710.1 | Chr09 | 22785037 | 22786762 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGCCTATATTTTTCAATATTGTGGTTGATATGTTAGCGGTTCTCATTGAGAGAGCTAAAGGCGATGGTCAAATTAGAGGAGTCATTCCATATTTAGTGGACGATGGTTTGTCCATTCTACAATATGCTGATGATACAGTAATTTTTCTAGATCATGACCTTGAACAGGCCAAAAATATGAAAGCCATCCTATGTGTGTTCGAACAGCTCTCAGGGCTGAAAATAAACTTTCATAAAAATATCTTGGTATTCCTATTCATTATCAGAAACTCCGGAATGTTGATTGGAAAGGAGTTGAAGATAGATTTGAGAGGAAACTCAGCACATGGAAAGGCAAAAACATGTCATATGTTGTTTAATGGTGAAGGCCTATGGCAAGACTTTTTGCGAAATAAATACTTAAAGGGTAAACCTCTTTCTGGTATGTCCAGCAAGATAGGTATTTCTCAGTTCTGGGCCGGTTTAATGAAAGTCAAAGACCAATTTCTTAGGTTTGGTTCTTTTAGATGTGGCAATGGGACAAACATAAGATTTTGGGAAGACACGTGGTTGGGATCACGTGCTTTCAAAGATCAATACCCTACATTATATAATGTGGCTCGAAAGAAGCAGTCTACTGTGCAGAGAAGAGCTATTGTTGGCCAAAAGCTAATCGAGTGGAACGATTTGATCCTCATGCTAGCTAATATAACTCTGTCAAATGAAAAGGACTGCTTTGTATGGTCGCTCCATAAGAATGGTCAATTTTCCATCAAATCTATGTATGCCGCGATCATGAACTGTAATGTTCGGATCAAAAAGAGAATTCTGTGGGACTTGAAAATTCCACTAAAGATCAAGGTCTTTATGTGGTTTCTTCACAAGAAAGTAATTCTAACAAAAGATAACCTGGCTAAAAGAAAATGGGGGGAGACAAACATTGTTCTTTCTGCTATGCACAAGAGACAATCCAACATCTTTTCTTTGAGTGTCATGTCGCTCAGTTTGTTTGGAGATGTTATCTTCATGTCTTCCTACTGGCTCCACTTTTGGTCTACAATGCTACCACAGGAGGAGCAGGATACTATGCGCAATGGTGCTACACTCTTGGAATCGGTAGCCAAGGATCTCTTATTCCACTATGGGTGGCGTAGTTCCATAAGAATTGCTAGCTAA
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| Protein seq | MSPIFFNIVVDMLAVLIERAKGDGQIRGVIPYLVDDGLSILQYADDTVIFLDHDLEQAKNMKAILCVFEQLSGLKINFHKNILVFLFIIRNSGMLIGKELKIDLRGNSAHGKAKTCHMLFNGEGLWQDFLRNKYLKGKPLSGMSSKIGISQFWAGLMKVKDQFLRFGSFRCGNGTNIRFWEDTWLGSRAFKDQYPTLYNVARKKQSTVQRRAIVGQKLIEWNDLILMLANITLSNEKDCFVWSLHKNGQFSIKSMYAAIMNCNVRIKKRILWDLKIPLKIKVFMWFLHKKVILTKDNLAKRKWGETNIVLSAMHKRQSNIFSLSVMSLSLFGDVIFMSSYWLHFWSTMLPQEEQDTMRNGATLLESVAKDLLFHYGWRSSIRIAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g44890 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0018780 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0018860 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0019070 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0018840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0385600 | RBH | 0.0084465 | 0.0263005 | 0.0217935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0375300 | RBH | 0 | 0 | 0.0414915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0014300 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0018350 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014090 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
