Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g38170 | OGI:09064440 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:21985883-21987160 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACTCAGATAAAGCATCCACATCAACAAGATGTGTAATTAAATTACAGCTCTCATCCGGCCAAAACTTGGACAAAGTTTCAGCACGGGCCTTATTAGCTAGAAAATAACTAATGGAATTCTGAGAACGCTGAATTTTCTTGAGGACAATCTCCCGGTCTCCAGACATCAGAATCCCGATGTCTTTAACAACGTGAGCAAGCGCTGACATTTCCTTCCGCGCATCTTGAATCATATTAACAGCCGTCAGGCAATCAGTCTCTACAATTATCGACAGTAAGGTCCATTGAAGCGCCATATTGAGCCCCTCTTTGCAGGCCAGAAGTTCAGACTCCAGGGGGCTAGTACAACGCTCAATAAAACCACAGGCAGAGAAAATAACCTGGCCGCTGGTATTCCTGAGCACCACACCCACACTTCCTGTGCTTGTTACAGAGTCAAAGGAACCATCAACATTTAGCTTCATCCATCGCTCCTGCGGTTTCTCCCACCTGGGTAGAGCCTCTGAACAATCCTGATGAATTTTCAGGCCCTGTCTTGGTCTGCATTGAACCACATGTTTCCCTGTAACGACGTTTGCTTGCGGATATTGTTTGATCTCTAAGAGCGAGGTGATATAGCTCTGTAGAAACCTTTGCGATACATCCACTGGAGGCGGCACTTTGTCGTGAACAATCTCATTATGCACAAACCAAATGTGCCATAACAACATAAACAGCATAGGTCTTTCCTCTTTTGGTGTTAGCTCAACTTGTTCAAACAGCCAGGAGGATCCTGTAGAATTTCCGACAATGCCGACTGACAAGTTGCCTGAATACAGCAAGGCAGACCATAGTCGCTTTGCATGTGGGCACCTTCCCAGTGCATGGCCAACATCTTCTCTTACAGTACCACAAATGCAACATATTTCTGACTGTTCTAGTTTCCTTCTCTTTTTATTCTCCATAGTGGCTAGGCTGTTTGTAGCAGCTTTCCACATGAAGATTTTAACCTTTTGTGGCACTTCACACTTCCAGATTAAATCCCACATCTTCCTGGACTTGTCATCTGACGAGCTGGAGCTTTCATCCATATTGGCCAGAGACATTGCCAGTTTATAAGCACTCCTGACATAGAAACGTCCCATCTTGTCCAGATGCCAAGCCAAAAAATCCTCATCCTGCCTCATTGAAGTCCGAATCCTCAGTATTTCTTCAGCATCACAGGGAAGGAAAACCCGATTAACTTTCTGAACGTCCCACACACCGTCAGGTCCCAATAGCTCGGACACCCATTTCAT
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| CDS seq | ATGAAATGGGTGTCCGAGCTATTGGGACCTGACGGTGTGTGGGACGTTCAGAAAGTTAATCGGGTTTTCCTTCCCTGTGATGCTGAAGAAATACTGAGGATTCGGACTTCAATGAGGCAGGATGAGGATTTTTTGGCTTGGCATCTGGACAAGATGGGACGTTTCTATGTCAGGAGTGCTTATAAACTGGCAATGTCTCTGGCCAATATGGATGAAAGCTCCAGCTCGTCAGATGACAAGTCCAGGAAGATGTGGGATTTAATCTGGAAGTGTGAAGTGCCACAAAAGGTTAAAATCTTCATGTGGAAAGCTGCTACAAACAGCCTAGCCACTATGGAGAATAAAAAGAGAAGGAAACTAGAACAGTCAGAAATATGTTGCATTTGTGGTACTGTAAGAGAAGATGTTGGCCATGCACTGGGAAGGTGCCCACATGCAAAGCGACTATGGTCTGCCTTGCTGTATTCAGGCAACTTGTCAGTCGGCATTGTCGGAAATTCTACAGGATCCTCCTGGCTGTTTGAACAAGTTGAGCTAACACCAAAAGAGGAAAGACCTATGCTGTTTATGTTGTTATGGCACATTTGGTTTGTGCATAATGAGATTGTTCACGACAAAGTGCCGCCTCCAGTGGATGTATCGCAAAGGTTTCTACAGAGCTATATCACCTCGCTCTTAGAGATCAAACAATATCCGCAAGCAAACGTCGTTACAGGGAAACATGTGGTTCAATGCAGACCAAGACAGGGCCTGAAAATTCATCAGGATTGTTCAGAGGCTCTACCCAGGTGGGAGAAACCGCAGGAGCGATGGATGAAGCTAAATGTTGATGGTTCCTTTGACTCTGTAACAAGCACAGGAAGTGTGGGTGTGGTGCTCAGGAATACCAGCGGCCAGGTTATTTTCTCTGCCTGTGGTTTTATTGAGCGTTGTACTAGCCCCCTGGAGTCTGAACTTCTGGCCTGCAAAGAGGGGCTCAATATGGCGCTTCAATGGACCTTACTGTCGATAATTGTAGAGACTGATTGCCTGACGGCTGTTAATATGATTCAAGATGCGCGGAAGGAAATGTCAGCGCTTGCTCACGTTGTTAAAGACATCGGGATTCTGATGTCTGGAGACCGGGAGATTGTCCTCAAGAAAATTCAGCGTTCTCAGAATTCCATTAGTTATTTTCTAGCTAATAAGGCCCGTGCTGAAACTTTGTCCAAGTTTTGGCCGGATGAGAGCTGTAATTTAATTACACATCTTGTTGATGTGGATGCTTTATCTGAGTAA
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| Protein seq | MKWVSELLGPDGVWDVQKVNRVFLPCDAEEILRIRTSMRQDEDFLAWHLDKMGRFYVRSAYKLAMSLANMDESSSSSDDKSRKMWDLIWKCEVPQKVKIFMWKAATNSLATMENKKRRKLEQSEICCICGTVREDVGHALGRCPHAKRLWSALLYSGNLSVGIVGNSTGSSWLFEQVELTPKEERPMLFMLLWHIWFVHNEIVHDKVPPPVDVSQRFLQSYITSLLEIKQYPQANVVTGKHVVQCRPRQGLKIHQDCSEALPRWEKPQERWMKLNVDGSFDSVTSTGSVGVVLRNTSGQVIFSACGFIERCTSPLESELLACKEGLNMALQWTLLSIIVETDCLTAVNMIQDARKEMSALAHVVKDIGILMSGDREIVLKKIQRSQNSISYFLANKARAETLSKFWPDESCNLITHLVDVDALSE |
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| Function | Putative ribonuclease H protein At1g65750 [UniProtKB/Swiss-Prot:P0C2F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g38170 | LOC_Os09g38170.1 | Chr09 | 21985883 | 21987160 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAATGGGTGTCCGAGCTATTGGGACCTGACGGTGTGTGGGACGTTCAGAAAGTTAATCGGGTTTTCCTTCCCTGTGATGCTGAAGAAATACTGAGGATTCGGACTTCAATGAGGCAGGATGAGGATTTTTTGGCTTGGCATCTGGACAAGATGGGACGTTTCTATGTCAGGAGTGCTTATAAACTGGCAATGTCTCTGGCCAATATGGATGAAAGCTCCAGCTCGTCAGATGACAAGTCCAGGAAGATGTGGGATTTAATCTGGAAGTGTGAAGTGCCACAAAAGGTTAAAATCTTCATGTGGAAAGCTGCTACAAACAGCCTAGCCACTATGGAGAATAAAAAGAGAAGGAAACTAGAACAGTCAGAAATATGTTGCATTTGTGGTACTGTAAGAGAAGATGTTGGCCATGCACTGGGAAGGTGCCCACATGCAAAGCGACTATGGTCTGCCTTGCTGTATTCAGGCAACTTGTCAGTCGGCATTGTCGGAAATTCTACAGGATCCTCCTGGCTGTTTGAACAAGTTGAGCTAACACCAAAAGAGGAAAGACCTATGCTGTTTATGTTGTTATGGCACATTTGGTTTGTGCATAATGAGATTGTTCACGACAAAGTGCCGCCTCCAGTGGATGTATCGCAAAGGTTTCTACAGAGCTATATCACCTCGCTCTTAGAGATCAAACAATATCCGCAAGCAAACGTCGTTACAGGGAAACATGTGGTTCAATGCAGACCAAGACAGGGCCTGAAAATTCATCAGGATTGTTCAGAGGCTCTACCCAGGTGGGAGAAACCGCAGGAGCGATGGATGAAGCTAAATGTTGATGGTTCCTTTGACTCTGTAACAAGCACAGGAAGTGTGGGTGTGGTGCTCAGGAATACCAGCGGCCAGGTTATTTTCTCTGCCTGTGGTTTTATTGAGCGTTGTACTAGCCCCCTGGAGTCTGAACTTCTGGCCTGCAAAGAGGGGCTCAATATGGCGCTTCAATGGACCTTACTGTCGATAATTGTAGAGACTGATTGCCTGACGGCTGTTAATATGATTCAAGATGCGCGGAAGGAAATGTCAGCGCTTGCTCACGTTGTTAAAGACATCGGGATTCTGATGTCTGGAGACCGGGAGATTGTCCTCAAGAAAATTCAGCGTTCTCAGAATTCCATTAGTTATTTTCTAGCTAATAAGGCCCGTGCTGAAACTTTGTCCAAGTTTTGGCCGGATGAGAGCTGTAATTTAATTACACATCTTGTTGATGTGGATGCTTTATCTGAGTAA
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| Protein seq | MKWVSELLGPDGVWDVQKVNRVFLPCDAEEILRIRTSMRQDEDFLAWHLDKMGRFYVRSAYKLAMSLANMDESSSSSDDKSRKMWDLIWKCEVPQKVKIFMWKAATNSLATMENKKRRKLEQSEICCICGTVREDVGHALGRCPHAKRLWSALLYSGNLSVGIVGNSTGSSWLFEQVELTPKEERPMLFMLLWHIWFVHNEIVHDKVPPPVDVSQRFLQSYITSLLEIKQYPQANVVTGKHVVQCRPRQGLKIHQDCSEALPRWEKPQERWMKLNVDGSFDSVTSTGSVGVVLRNTSGQVIFSACGFIERCTSPLESELLACKEGLNMALQWTLLSIIVETDCLTAVNMIQDARKEMSALAHVVKDIGILMSGDREIVLKKIQRSQNSISYFLANKARAETLSKFWPDESCNLITHLVDVDALSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g33590 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0018500 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0018570 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0018780 | SBH | 0.0 | 0.0 | 0.879279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0018540 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0018740 | SBH | 0.0 | 0.0 | 1.380321 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0372100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0018500 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0358500 | RBH | 0.0060935 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0018620 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0018380 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0018360 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0018360 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0018490 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G018880 | SBH | 0.0 | 0.0 | 0.675881 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0018740 | SBH | 0.0 | 0.0 | 0.510707 |
