Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g36580 | OGI:09061930 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:21098267-21101213 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACACTCGGCTTGCTTCCACTCTGCACACTCAAGCTGTAGTGGCCACTATTACTAGTTTACTTGCATCTAACTTCCTCCAAGCTTCTAACCACCGTCTTGCCATTTAGGGTTAGCTGACTGCCAATTTCAAGAACATACCGGTCACTCTTGCCATAACTGATCACTTTCCTGCATATCCAGCATATATATACATATAACAGTAACGCACATTTGAATTGGGTTTCAGTTTACAATTTATTGCTGCTCAAATGGCTTCTTGGATCATCACTCGATCTACTTGGATCATGAGTGTGTTCTTCGTCATCCTATCATTCTTTCAAGGTATTGAGATTGGCAATGGTGAATTGAATTCTTGGTTCTTGGGTTTGTTCTGTTTGTAAGTTGATCATGGTGGATTTGGTGTGTGTGCAGGGTTGGTAATGGTGGGCGGCGTGACGTTCACGTTCACGAACAGGTGCGGCGGCACGGTGTGGCCGGGGGTGCTGTCGAACTCGGGGAGCTCGGCGCTGGGGACGACGGGGTTCGCGCTGGGCGCCGGCGAGACGCGGTCGCTGGCGGCGCCGGCGGGGTGGTCGGGGAGGTTCTGGGCGCGGACGGGGTGCACGTTCGACGACGACGGCAAGGGCACTTGCGCGACGGGGGACTGCGGCTCCGGCGAGGTGGAGTGCCGCGGCGCGGGGGCGACGCCGCCGGCGACGCTGGTGGAGTTCACGCTGGGCAGCGGCGGCGGCGGCGGGAAGGACTACTACGACGTGAGCCTGGTGGACGGGTACAACCTGCCCATGGTGGTGGAGGCGGCGGCGGCGGGGTGCCCGGCGACCGGGTGCGTCGTGGACCTCAACCAGCGGTGCCCCGCCGAGCTGAAGGCCGGCCATGGCCAGGCTTGCCGGAGCGCGTGCGAGGCGTTCGGCACGCCGGAGTACTGCTGCAGCGGCGACCACGGCAATCCGGACACGTGTCACCCGTCGGTGTACTCGCAGATGTTCAAGAGGGCGTGCCCTAGGTCGTACAGCTACGCCTACGACGACGCCACGTCGACCTTCACCTGCACCGGCACCGACTACTCCATCACCTTCTGTCCTCGACCCGGCAATCCCAACAGGTTGGCCAACTCTTTTTTTTTTTTTACAATTTTTACCTCTTCGCTTTACTTTGCGTGTGCATTGTCGTGCTCTGCCTATGTCCCAAAAAAAAACTCAACCTACGATATACTCTATGAATCTGGACATAGAGTATATCTAGATTTATCGTATTAGGATGTGTCAGGTTAAGTTTTTCTGGGACGGAAGAAATATCTATTAACACTGTTGAATTTTGGGCTCCTATGTTTTGTTATAGACCACAGCTAAAATTTAAATTTTAAAATTTAGTTTTAGAGTTGGTTTTGTTGTTTTTTCATCGGAGTTTATTTTTAAATATTAAGTTTTAAATTATTTAAGGATACATATAAAATGTTTACTTTTGTATATTACTCATAAATCGTACGGTTTATATCAACATTAAACCAACCGATGGCAGCCTTGGCTTCAGCAGCTTATCAAGCTCAATTGGTCAAAGGTATGGACTCACATAGGAGATTTTTGTAGCGTAAAAATTTGGTACCTCCTTAATTAGGCAAGTTAAGCCTAGCATACACTTTAGTAGGCTTATTTTCATAGGTTATTTGTCCTGTGGTGGTTGAACAGTCGCAAGATACATCATAATATGGAGAAAAAAATGTCAAGTTTAGGGCTCTTCCCTCTATCAAGTGAGGGTAGCTGTGGCGGTGGCCCAGAGCTGAAACATGGACGGACATAATGGCTGGAGAATATGGGCATCTTCCAGATTACTTAGAAAATGCATTTTCGACAAAAGGAGCATCAAACTGAGATGGAGAAAGGAGTGAGGGGGTTGAGAGAGAGACAAGGATAAGCTGTGAGAGAGAAAAGAGAGAGAGCTCTGCTAGCTAGCTTTAAATTGTTCTCCTCTCTTCTTTTGCCGCCTTCGCCTTTGTTCCTTCCCCACCTTGTATGGTCATCAGTCACCCGCCATTGCTAGTGGCTGTCCAGCTTAAAGCTTCCCATGCCTAACTGGACAAAAAATCACCAAAAAATCAAGGGAAAAAAAAACAAGCCTGGAATCTCTCACATACTATCGCGACACGGTTATCAGGGTAAAATTAACTTGTCTTATGACGGTCTAATCTCTCATACATTAACTAAACATCCTTGATTCTTCTTCTGTAGGTTGCATCTTGAATTCCTGATTGATGACATTTTTAATAATCTTTTTGTTCATCAACATATATATCATGTGTCATTCTATCTCTGCAGTCAGAAATCGAGCAATGACCCGTCGCCGAGGCCGAAGGATCCGCAGCTGGAGGACGACTCATGGCTGGCGAGCTTGGCCACCGGCGAGGTCGACGGCGCGGCGCCGGCGTCGACGTCGTTGTTGCTGCAAGCCACATTAGCAGTGGCAGTAATGGCTTTGCTTGTGCTACACTAGCTAGCTAAAGATTAAATTGGCCGGATATTTCAGTCAAAAAAAAAAGGCCGGATAGGAGATGACCCTGATGTGGCAAGAGGATGGAGATTCTTGATCGGTAGGAAGTGGCCGGTGTTGCTTTCCGATTTTTTTAAAAAAACAAGATTGGAGCAGTAGGATGAGGACGTGAAGCGATATTCTTTAGCCTTTTGCTTGTGGATAGAAGGATTGAAGCTCTGTGGACTTCTAGTGGTATTATGACTTGTTAAGGTGTCACCGTGTCAGTCAACAAGAACTCTCTGCAAGACTGCAATAGTTTTCTGCCTTTCAGGAAACTTGCTACTTTAGTTACTTCTTGTGTATAGATTTTTGTCTTTTTATTATTATTTTTTTTGCCCCCACATATATTCATGTCACACGCTGTATTCCAAGTAAAGAAAGTATATAGTAAAATTTCATCACCTGTTATCAGTCTAATGAA
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| CDS seq | ATGGCTTCTTGGATCATCACTCGATCTACTTGGATCATGAGTGTGTTCTTCGTCATCCTATCATTCTTTCAAGGGTTGGTAATGGTGGGCGGCGTGACGTTCACGTTCACGAACAGGTGCGGCGGCACGGTGTGGCCGGGGGTGCTGTCGAACTCGGGGAGCTCGGCGCTGGGGACGACGGGGTTCGCGCTGGGCGCCGGCGAGACGCGGTCGCTGGCGGCGCCGGCGGGGTGGTCGGGGAGGTTCTGGGCGCGGACGGGGTGCACGTTCGACGACGACGGCAAGGGCACTTGCGCGACGGGGGACTGCGGCTCCGGCGAGGTGGAGTGCCGCGGCGCGGGGGCGACGCCGCCGGCGACGCTGGTGGAGTTCACGCTGGGCAGCGGCGGCGGCGGCGGGAAGGACTACTACGACGTGAGCCTGGTGGACGGGTACAACCTGCCCATGGTGGTGGAGGCGGCGGCGGCGGGGTGCCCGGCGACCGGGTGCGTCGTGGACCTCAACCAGCGGTGCCCCGCCGAGCTGAAGGCCGGCCATGGCCAGGCTTGCCGGAGCGCGTGCGAGGCGTTCGGCACGCCGGAGTACTGCTGCAGCGGCGACCACGGCAATCCGGACACGTGTCACCCGTCGGTGTACTCGCAGATGTTCAAGAGGGCGTGCCCTAGGTCGTACAGCTACGCCTACGACGACGCCACGTCGACCTTCACCTGCACCGGCACCGACTACTCCATCACCTTCTGTCCTCGACCCGGCAATCCCAACAGTCAGAAATCGAGCAATGACCCGTCGCCGAGGCCGAAGGATCCGCAGCTGGAGGACGACTCATGGCTGGCGAGCTTGGCCACCGGCGAGGTCGACGGCGCGGCGCCGGCGTCGACGTCGTTGTTGCTGCAAGCCACATTAGCAGTGGCAGTAATGGCTTTGCTTGTGCTACACTAG
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| Protein seq | MASWIITRSTWIMSVFFVILSFFQGLVMVGGVTFTFTNRCGGTVWPGVLSNSGSSALGTTGFALGAGETRSLAAPAGWSGRFWARTGCTFDDDGKGTCATGDCGSGEVECRGAGATPPATLVEFTLGSGGGGGKDYYDVSLVDGYNLPMVVEAAAAGCPATGCVVDLNQRCPAELKAGHGQACRSACEAFGTPEYCCSGDHGNPDTCHPSVYSQMFKRACPRSYSYAYDDATSTFTCTGTDYSITFCPRPGNPNSQKSSNDPSPRPKDPQLEDDSWLASLATGEVDGAAPASTSLLLQATLAVAVMALLVLH |
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| Function | Thaumatin-like protein 1 [UniProtKB/Swiss-Prot:A0A1P8B554] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g36580 | LOC_Os09g36580.1 | Chr09 | 21098267 | 21101213 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTTCTTGGATCATCACTCGATCTACTTGGATCATGAGTGTGTTCTTCGTCATCCTATCATTCTTTCAAGGGTTGGTAATGGTGGGCGGCGTGACGTTCACGTTCACGAACAGGTGCGGCGGCACGGTGTGGCCGGGGGTGCTGTCGAACTCGGGGAGCTCGGCGCTGGGGACGACGGGGTTCGCGCTGGGCGCCGGCGAGACGCGGTCGCTGGCGGCGCCGGCGGGGTGGTCGGGGAGGTTCTGGGCGCGGACGGGGTGCACGTTCGACGACGACGGCAAGGGCACTTGCGCGACGGGGGACTGCGGCTCCGGCGAGGTGGAGTGCCGCGGCGCGGGGGCGACGCCGCCGGCGACGCTGGTGGAGTTCACGCTGGGCAGCGGCGGCGGCGGCGGGAAGGACTACTACGACGTGAGCCTGGTGGACGGGTACAACCTGCCCATGGTGGTGGAGGCGGCGGCGGCGGGGTGCCCGGCGACCGGGTGCGTCGTGGACCTCAACCAGCGGTGCCCCGCCGAGCTGAAGGCCGGCCATGGCCAGGCTTGCCGGAGCGCGTGCGAGGCGTTCGGCACGCCGGAGTACTGCTGCAGCGGCGACCACGGCAATCCGGACACGTGTCACCCGTCGGTGTACTCGCAGATGTTCAAGAGGGCGTGCCCTAGGTCGTACAGCTACGCCTACGACGACGCCACGTCGACCTTCACCTGCACCGGCACCGACTACTCCATCACCTTCTGTCCTCGACCCGGCAATCCCAACAGTCAGAAATCGAGCAATGACCCGTCGCCGAGGCCGAAGGATCCGCAGCTGGAGGACGACTCATGGCTGGCGAGCTTGGCCACCGGCGAGGTCGACGGCGCGGCGCCGGCGTCGACGTCGTTGTTGCTGCAAGCCACATTAGCAGTGGCAGTAATGGCTTTGCTTGTGCTACACTAG
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| Protein seq | MASWIITRSTWIMSVFFVILSFFQGLVMVGGVTFTFTNRCGGTVWPGVLSNSGSSALGTTGFALGAGETRSLAAPAGWSGRFWARTGCTFDDDGKGTCATGDCGSGEVECRGAGATPPATLVEFTLGSGGGGGKDYYDVSLVDGYNLPMVVEAAAAGCPATGCVVDLNQRCPAELKAGHGQACRSACEAFGTPEYCCSGDHGNPDTCHPSVYSQMFKRACPRSYSYAYDDATSTFTCTGTDYSITFCPRPGNPNSQKSSNDPSPRPKDPQLEDDSWLASLATGEVDGAAPASTSLLLQATLAVAVMALLVLH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.847221 | 1.582097 | 0.372749 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0536400 | RBH | 2.759996 | 2.380100 | 1.443977 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g43510 | RBH | 0.208178 | 0.651902 | 0.521057 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0536400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017860 | SBH | 0.389817 | 0.000000 | 2.311033 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017950 | SBH | 0.107547 | 0.571874 | 0.665076 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0018170 | SBH | 0.656692 | 3.292694 | 3.014224 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0017920 | RBH | 0.164081 | 0.037646 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0018070 | SBH | 1.308066 | 1.830896 | 6.753230 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0354000 | SBH | 0.2835725 | 0.0563705 | 0.043006 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017910 | SBH | 0.178965 | 0.424360 | 0.434061 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0342000 | SBH | 3.701216 | 15.563155 | 0.732259 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017970 | RBH | 0.082874 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017720 | SBH | 0.370359 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017750 | SBH | 1.965616 | 10.502182 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017700 | RBH | 0.930011 | 0.0 | 0.287895 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017830 | SBH | 0.348644 | 1.609949 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G018200 | RBH | 0.321265 | 1.771516 | 0.294523 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0018070 | RBH | 7.711413 | 4.917150 | 1.874322 |
