Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g36244 | OGI:09061370 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:20906765-20908479 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGTTTTGAAAGAAAACAGTAGATGATGTGCAAAATGTGGACCGCAACCATTTTTCTCATCGTATGCAGCTAATTTGATATTTGAGTTTATTTGTTTATATGCAGGTTAGGAGATATTGTTTGACTTCAACTAAGGTACACTATCCTGTTTCAAGAAAAAAAAAAGCTATTGCCCTTAATTAAGCATGTAGCGCTATTGATATTGAGTTCTAGCACTGTTTTGGTAGTACATTTTGTATGTAGATTCTGAATTTCTGATGCTTGTTAGTTAAAACCATACTCTGTTCTAGTAGTAATTTTCAAATACATTTACTCTGAATCGAGTAGATCATTTACTTTTTCTTATGCCTCTTCAATTGTGCTTTCCTGTAGCTGCAACGGCAGCACCCAGATTCTGCATTCGCAGATCTTATAATCTGCCAAAGCCCAAAGCTTTGATGCCAGGATTCGTGGTTTTGTAGAAATGTGCAGTAAAAACCGAAGTCGTGGTTTTTTCGGCTGCCGAATCAAAGCGTAAGCTGTGGATTGGTTGTAGTGCGGGATGGTACTTTCTGGTTCTGCTGATTCAGAAAAGTGAAACATATGGTTTGCCTTAAAATAGACGCTAGTAAATGGAAAGAACAACTGCCTTTCAGTCCCAACTTCTTGAGGAGACCTGCACCTTTACTTATGTGGTATGTGTCAGATCATGAAGGTTTTAATTGGAAGGGATGAGATCGAGGTGTGTTTTATCAAGTTATGCTGTGGAAATGGGTATTAGAATCTGGTGTTAACATTCATATACAAGTAACATCGTGCGAAATTATACTGTAATCTGTATTATGTAGTGCAAGAATCGCAAGTAATCACACTGGCAGTTGGCTTTAACATTAGCCTTTTTATCCTTTGCAGGTTACTCAGACACGATGCTGGAACTGCTACTTTTTGCTTTGGAAGATCTTAAGATGGTTTTGAAGTCTCAGGAGTCTGATCTTCTCATAGGCTTGGGAAATGCTGAAGATGTTGTTCTCAAGCTTGTAAATGAGGTCACTATGCAAGGTTTATGTTGAGAATTGAGCTTAAGAGTTTATGCAAACCTTCACTGCTAGCCATCTAACATATCCAGATCTCCTGATTGCATGCATTGATGGAGCATAACAGGTACAAGCGGGCCTCATTTTCACAGAAGAGGAAGTTGAGTACAGAGTGCGCAATGTTCTGGCCAGTGTTGAATCATCTCTCTCTAATGCATCATACCTATCGGGAAACCCTCCTGAGATAGTGGTTTGGAGTGCCTCATTGTATGACTACAAGGTAATTTTTTATCTCAGGTTATCATTCCCTATTGCTATCCTCTAGCAACCTAATTATGTTTGGCATGCTAAAATCATTCCACCAGAATCCGAGGGAATTGTCAACATCACACAACCAATTTTTGAAGGAAAAATTACCGATGAACACACCTCTTGCTGCCCCGTCTTTACCTGCTCTGAACATAGAGATAGAGACAGGTGTATTTCAGTTCTCTTTTTTTTTTTGGTTAGTGATTATATCCTTGATCATTTTTGGTGTGTGCATTGTGATACTTGTGGGCTACTAGCTAATATGTTCAGGTATTTTACTTTTCTTTTTTCCTTCTTGTAGTATAGCGAAGGCAACCGAATATATTTTTTTTTTCAAAAATGTATTTCACTTTTCTTTGAATCAAATCAATCCATCTCTTTTCCTTGTGATC
More
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| CDS seq | ATGCTGGAACTGCTACTTTTTGCTTTGGAAGATCTTAAGATGGTTTTGAAGTCTCAGGAGTCTGATCTTCTCATAGGCTTGGGAAATGCTGAAGATGTTGTTCTCAAGCTTGTAAATGAGGTCACTATGCAAGGTACAAGCGGGCCTCATTTTCACAGAAGAGGAAGTTGA |
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| Protein seq | MLELLLFALEDLKMVLKSQESDLLIGLGNAEDVVLKLVNEVTMQGTSGPHFHRRGS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g36244 | LOC_Os09g36244.1 | Chr09 | 20906765 | 20908479 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTGGAACTGCTACTTTTTGCTTTGGAAGATCTTAAGATGGTTTTGAAGTCTCAGGAGTCTGATCTTCTCATAGGCTTGGGAAATGCTGAAGATGTTGTTCTCAAGCTTGTAAATGAGGTCACTATGCAAGGTACAAGCGGGCCTCATTTTCACAGAAGAGGAAGTTGA |
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| Protein seq | MLELLLFALEDLKMVLKSQESDLLIGLGNAEDVVLKLVNEVTMQGTSGPHFHRRGS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.048631 | 0.699903 | 0.198972 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0532700 | SBH | 13.351435 | 9.863537 | 6.315846 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0532700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017560 | SBH | 0.000000 | 0.0 | 1.166371 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017630 | SBH | 0.000000 | 1.092684 | 0.461356 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017870 | SBH | 0.0 | 0.000000 | 0.774536 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0017610 | SBH | 0.523492 | 0.009268 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017750 | SBH | 32.298496 | 8.352662 | 19.264902 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0350200 | SBH | 10.3789475 | 3.431774 | 3.00867 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017590 | SBH | 0.922614 | 0.293244 | 2.974820 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0338600 | SBH | 0.971669 | 2.698415 | 3.126566 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017640 | SBH | 2.481254 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017420 | SBH | 3.424902 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017450 | SBH | 51.174820 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017370 | SBH | 3.708144 | 0.0 | 3.598376 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017510 | SBH | 2.006246 | 0.508122 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017890 | SBH | 1.508702 | 0.926498 | 3.964863 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017740 | RBH | 4.034605 | 3.038103 | 3.714351 |
