Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g33970 | OGI:09058600 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:20053775-20057717 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAAAAAAATTCTCCTCCTCATCGAGTCATCGTCATCGTCCTCGTCTCCGACTCCAACTCTCCATCTCAAAATCGTCTCACTCGGTCACGCCTCGCAGCCCGCATCCCATCCCATCGCATCGCGTCGCACCGCACCGCACCGCAACCCGCCCAAACCCTAACCCTCGCGCCATCTCGTCCTCGCCGGCGTGCTCCGCCGCCGCCGCCATGTCCGCCAGGCTGCTCCGGCGAGTGCTCCAGGAGCGGGAGACCGCCCCGCAGGACCCTGCCGCCGCCGCCGCCGCCGCAGAGGTCGAGCGGGAGGAGGAGGAGGAGGCCTCCCCTCCCCGTGTCGCCGCCAGGAACCCCTTCGATCTCCTCGACGAAGAGGAGGAGGAAGAGGAGGAGAAGGTTCGTGCTCGTGCCTCCTCCCGTGTCTTCTCGTAAGGGTTCTAGTTTGGTTTTGGATCGCCTCTCGAATATAATCGCTGTCGCGCGAGCATATTGCCTCCGTGTACCATGTCAGTGATGAAAATCGTTGAATTTAAGTAGATACGGTTTACGCTGTGGAAGAGAAGGCGAGAAGCGATTTTTCATTGCTTCTATGTCGTTTTGATGATATTTTGTATAATCAGTTTTGATGATATCTAGATTGTAGAATCATTAGCGATTTAGCGGTGGATCGTTGTTGCCCTGTGGTGAATACTTTCTCAATCTCATTTAAGCTACCAGCTGAACCTTCTTAAGGATGGACCAGGTTTTACAGCATAGAATCTGTGGTTTGTTTTGTTGGTCAAGAATTAGTTGCGGCCTTGTGTGCTCGCCTTGTGAGGGGTTATTAAAGTTTTATGTCTAGCAGGCGATGGCATATGCTTGCATGGAGCCATCAGCCATGATCTCATGGTAAAAGAAATAAAAGAATATGCTTCCAAAAAATAAAACTCTAGCTATGTTCTATGTTTTAGTTGTAGCCTTATTGAGTTATAACCATATAATGTGTCGGCAGTATTGCTGGCTAATTTTATGTTTCATGGCCTCGTGTGGTGATAGATGACTGTTTAATTTAATGTTCTTACTCTGCTGCAGGAAGATGAAGTGTATTCTGAGCAACCTGTGAGTTACAACGAACAGAAACATTCTGTGAACAAGAAGCCTGGCAATGCTGTTCCTGAAACAAACAAGAAATCAAAGAAAAAGAAGAAAAAGAGCAAGGCAGACAAACAAGTGTCAACAAAGTCAAGGGATGAAAAGTCACTGGATTCAATTCTGGAAGATTTATCTATTGAAAAGAAGCCCATGCAGCAAAGAGTTAATCAAAATGAAAGAGCATCTGGGAAGGAGATTGAGATAGATGAAACCACTCCTGGGACATCATCTATTCTCTCAATTGATCCCAAACATCTAAAAGCTGAAAATGAGATGAGGCGCATTTTTGGATCAAAAGTAGTGGATTCACTTGAAAATCAACGGAATGTGCCTAGCAGTTCAACATCAAGGCTACGAGGTGTTAGGCGCGTTGCCCACAATCCAAGAAAAACCCTTCTTGTTACTCCATCTAGCTACTGGCCACCATGGGATAAATCAATGTCAATGGATATTGTGGAGACAAAGAGTGGTTTCAACTATTTCAGGTGAGGCCATTTCGTATTTTTTGTGCATCATGTATCCCTGTTTATCATCTCTGCACATCACTATTTTGTTTGGTTACAGCTTACAACTATGACCATTAGTTATATTGTATATTGTGTTCACTGTACTGCTTTTCCTCACAATCTTATTTCTCAGTATATTTTTTTCTAAACTTTAAGGTGATGTAAGATTTCAGAATTAACTCCCAATGGGCCTGTGCTTTTCCTTAACTTTCTCTATAATCAAACTCTTCATGTCGTGCAGGTACATATATGATCCTTCTGTCAGTCATGTGCAAGACTTGTTTGAAGTTGCCAAATCTGCAAATGATCTCAATGCTATTGCAGCTATATTAGCAAAGTACCCTTATCACCCAGAATCATTGTTAACATTTGCTGAACTTTTCAAATATTCTGGAGAACATCAATCGTCAGCAGATGCTGTTGAGAAGTGTCTATTTGCTCTGGAGTGTGCTTGGCATCCATTGTTTAGCCCACTGCACAGCAACTGCCAGCTGAAATATAGCCATGACACAAACAAGCCATTCTTTACTGCGCTTTTTAGTCACATGAAAAATTTGGATAGACGTGGCTGCCATCGGTCTGCTTTAGAGGTCTGCAAATTCCTTCTTTCATTGGATTCTGATGATCCAAAGGGTGCTCTATTCTGCATTGATTACTTTGCTCTAAGATCACAACAGTACAAATGGTTGGAACAGTTTGCAGAAGAGTACCAGTGTGATAACTCCTTGTGGTTATTCCCTAATTTCTCATTTTCCCTTGCCATTGCACGGTTCTACGTTGAGCGTGATGCAACAAATGGGGAGGCTTCTGACCATTCTGACAAGTCAACATCTGTAGATCTCATGAAGCAAGCATTGATGCTTCATCCTTTGGTGCTGCGCAAGATTGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTCTTTGGATCAGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTAGCATATATGTTGAACGCCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTTTTGGTGATTGAATCACTAAAACAGGATAACAGAGAGGCCCAGGACTGGGCATGTGTTAGAAAAGAAGCATTCTCTTCAGATAAGAATGAGTAAGTTGCTCCAAATTTTTTTGCGTAGTGTCAATGTTCTGTCTGCTCTTCGATTACATCTTCCCTTTTTATTTTAAGGAGAGCACTTCAATATGATTTTTGTTGCCCAGAACTGAAGGCTTATTTAGTTATGATATTGCTTTCCACTGACTACCAATACCTTTTCTTTGTTGCAATTTGAGTTGTAAATTTTATCTTGGTCTGAACGTTCACATAACAATATATGGTTTAGCCGTCTACCTTACTGACTCCATTCTTAATTTGTTGGCAATGTTGGATCTGTAGTCTTAGCATGTACGATAGTGATATATAATATTACCTCTTTCCTTTTATATATGATGTTGGTTAGATAAAAAATGAACTAACCAACGTCAAACAAAAAAAACAAGAGGGAGTACAAACACTACAGATATGCAGTTTATTTCACATATTGCTTTGGTGGACTTAAATATTTATACATGACACTAAGCAAAATCCACCTACGCCTGTAGTTATATCCCAATTTTTGGTATCTGTTAATCTTTGGAGTTATAACATGTTTTTGAGTTTTGAGAAGTTGTTTCTTATTTTGCAGGTACTCTCATCTTCTTGTTTCAGACTTCTCCGACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGGTTGCTCCTGGAATGGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGATTCAACCCAAAGCACCAAGTGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCACCCATGTGCTTTCCTGTCTCTATGATGATTAACACAAATTGCTGTCAATCATTGTATCACCTTCACACTCTCAAGCAACAATCATCAGAAACTAGTGCTCTAGTACTTTTCATGGTTTCGGCATACATGTATAGCTGATCCACCAAAATCTAAATCGCTGAAATATTAAGTCAATTTTGGGCCTGGAAACATGAGAGATCAATGTGTCAATTTCTGCAACCGACTCTGTTTATCCCTACCAATCCAGCATGCTGCACATTTGC
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| CDS seq | ATGTCCGCCAGGCTGCTCCGGCGAGTGCTCCAGGAGCGGGAGACCGCCCCGCAGGACCCTGCCGCCGCCGCCGCCGCCGCAGAGGTCGAGCGGGAGGAGGAGGAGGAGGCCTCCCCTCCCCGTGTCGCCGCCAGGAACCCCTTCGATCTCCTCGACGAAGAGGAGGAGGAAGAGGAGGAGAAGGAAGATGAAGTGTATTCTGAGCAACCTGTGAGTTACAACGAACAGAAACATTCTGTGAACAAGAAGCCTGGCAATGCTGTTCCTGAAACAAACAAGAAATCAAAGAAAAAGAAGAAAAAGAGCAAGGCAGACAAACAAGTGTCAACAAAGTCAAGGGATGAAAAGTCACTGGATTCAATTCTGGAAGATTTATCTATTGAAAAGAAGCCCATGCAGCAAAGAGTTAATCAAAATGAAAGAGCATCTGGGAAGGAGATTGAGATAGATGAAACCACTCCTGGGACATCATCTATTCTCTCAATTGATCCCAAACATCTAAAAGCTGAAAATGAGATGAGGCGCATTTTTGGATCAAAAGTAGTGGATTCACTTGAAAATCAACGGAATGTGCCTAGCAGTTCAACATCAAGGCTACGAGGTGTTAGGCGCGTTGCCCACAATCCAAGAAAAACCCTTCTTGTTACTCCATCTAGCTACTGGCCACCATGGGATAAATCAATGTCAATGGATATTGTGGAGACAAAGAGTGGTTTCAACTATTTCAGGTACATATATGATCCTTCTGTCAGTCATGTGCAAGACTTGTTTGAAGTTGCCAAATCTGCAAATGATCTCAATGCTATTGCAGCTATATTAGCAAAGTACCCTTATCACCCAGAATCATTGTTAACATTTGCTGAACTTTTCAAATATTCTGGAGAACATCAATCGTCAGCAGATGCTGTTGAGAAGTGTCTATTTGCTCTGGAGTGTGCTTGGCATCCATTGTTTAGCCCACTGCACAGCAACTGCCAGCTGAAATATAGCCATGACACAAACAAGCCATTCTTTACTGCGCTTTTTAGTCACATGAAAAATTTGGATAGACGTGGCTGCCATCGGTCTGCTTTAGAGGTCTGCAAATTCCTTCTTTCATTGGATTCTGATGATCCAAAGGGTGCTCTATTCTGCATTGATTACTTTGCTCTAAGATCACAACAGTACAAATGGTTGGAACAGTTTGCAGAAGAGTACCAGTGTGATAACTCCTTGTGGTTATTCCCTAATTTCTCATTTTCCCTTGCCATTGCACGGTTCTACGTTGAGCGTGATGCAACAAATGGGGAGGCTTCTGACCATTCTGACAAGTCAACATCTGTAGATCTCATGAAGCAAGCATTGATGCTTCATCCTTTGGTGCTGCGCAAGATTGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTCTTTGGATCAGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTAGCATATATGTTGAACGCCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTTTTGGTGATTGAATCACTAAAACAGGATAACAGAGAGGCCCAGGACTGGGCATGTGTTAGAAAAGAAGCATTCTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTCTCCGACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGGTTGCTCCTGGAATGGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGA
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| Protein seq | MSARLLRRVLQERETAPQDPAAAAAAAEVEREEEEEASPPRVAARNPFDLLDEEEEEEEEKEDEVYSEQPVSYNEQKHSVNKKPGNAVPETNKKSKKKKKKSKADKQVSTKSRDEKSLDSILEDLSIEKKPMQQRVNQNERASGKEIEIDETTPGTSSILSIDPKHLKAENEMRRIFGSKVVDSLENQRNVPSSSTSRLRGVRRVAHNPRKTLLVTPSSYWPPWDKSMSMDIVETKSGFNYFRYIYDPSVSHVQDLFEVAKSANDLNAIAAILAKYPYHPESLLTFAELFKYSGEHQSSADAVEKCLFALECAWHPLFSPLHSNCQLKYSHDTNKPFFTALFSHMKNLDRRGCHRSALEVCKFLLSLDSDDPKGALFCIDYFALRSQQYKWLEQFAEEYQCDNSLWLFPNFSFSLAIARFYVERDATNGEASDHSDKSTSVDLMKQALMLHPLVLRKIVDKAPLKDSSWTQILRNVFFGSAKPGSPSLEHMISIYVERHYIMWRFPELQNLLKDAALLVIESLKQDNREAQDWACVRKEAFSSDKNEYSHLLVSDFSDTTPSLPPEELRPFMVAPGMAHEMPPAEQELGIEVRPRAPREVAGRNPALVFLESLLPWVDYGDNHHDENDQNNDD |
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| Function | Transcription factor 25 [UniProtKB/Swiss-Prot:Q9BQ70] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g33970 | LOC_Os09g33970.1 | Chr09 | 20053775 | 20057717 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCCGCCAGGCTGCTCCGGCGAGTGCTCCAGGAGCGGGAGACCGCCCCGCAGGACCCTGCCGCCGCCGCCGCCGCCGCAGAGGTCGAGCGGGAGGAGGAGGAGGAGGCCTCCCCTCCCCGTGTCGCCGCCAGGAACCCCTTCGATCTCCTCGACGAAGAGGAGGAGGAAGAGGAGGAGAAGGAAGATGAAGTGTATTCTGAGCAACCTGTGAGTTACAACGAACAGAAACATTCTGTGAACAAGAAGCCTGGCAATGCTGTTCCTGAAACAAACAAGAAATCAAAGAAAAAGAAGAAAAAGAGCAAGGCAGACAAACAAGTGTCAACAAAGTCAAGGGATGAAAAGTCACTGGATTCAATTCTGGAAGATTTATCTATTGAAAAGAAGCCCATGCAGCAAAGAGTTAATCAAAATGAAAGAGCATCTGGGAAGGAGATTGAGATAGATGAAACCACTCCTGGGACATCATCTATTCTCTCAATTGATCCCAAACATCTAAAAGCTGAAAATGAGATGAGGCGCATTTTTGGATCAAAAGTAGTGGATTCACTTGAAAATCAACGGAATGTGCCTAGCAGTTCAACATCAAGGCTACGAGGTGTTAGGCGCGTTGCCCACAATCCAAGAAAAACCCTTCTTGTTACTCCATCTAGCTACTGGCCACCATGGGATAAATCAATGTCAATGGATATTGTGGAGACAAAGAGTGGTTTCAACTATTTCAGGTACATATATGATCCTTCTGTCAGTCATGTGCAAGACTTGTTTGAAGTTGCCAAATCTGCAAATGATCTCAATGCTATTGCAGCTATATTAGCAAAGTACCCTTATCACCCAGAATCATTGTTAACATTTGCTGAACTTTTCAAATATTCTGGAGAACATCAATCGTCAGCAGATGCTGTTGAGAAGTGTCTATTTGCTCTGGAGTGTGCTTGGCATCCATTGTTTAGCCCACTGCACAGCAACTGCCAGCTGAAATATAGCCATGACACAAACAAGCCATTCTTTACTGCGCTTTTTAGTCACATGAAAAATTTGGATAGACGTGGCTGCCATCGGTCTGCTTTAGAGGTCTGCAAATTCCTTCTTTCATTGGATTCTGATGATCCAAAGGGTGCTCTATTCTGCATTGATTACTTTGCTCTAAGATCACAACAGTACAAATGGTTGGAACAGTTTGCAGAAGAGTACCAGTGTGATAACTCCTTGTGGTTATTCCCTAATTTCTCATTTTCCCTTGCCATTGCACGGTTCTACGTTGAGCGTGATGCAACAAATGGGGAGGCTTCTGACCATTCTGACAAGTCAACATCTGTAGATCTCATGAAGCAAGCATTGATGCTTCATCCTTTGGTGCTGCGCAAGATTGTTGACAAGGCTCCTTTGAAAGACTCCTCGTGGACCCAAATACTCAGGAATGTGTTCTTTGGATCAGCAAAGCCAGGAAGCCCTTCCCTTGAGCATATGATTAGCATATATGTTGAACGCCATTACATCATGTGGAGGTTCCCAGAACTGCAGAATTTACTCAAAGATGCTGCTCTTTTGGTGATTGAATCACTAAAACAGGATAACAGAGAGGCCCAGGACTGGGCATGTGTTAGAAAAGAAGCATTCTCTTCAGATAAGAATGAGTACTCTCATCTTCTTGTTTCAGACTTCTCCGACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGGTTGCTCCTGGAATGGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCGCAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGACCAAAACAATGATGACTGA
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| Protein seq | MSARLLRRVLQERETAPQDPAAAAAAAEVEREEEEEASPPRVAARNPFDLLDEEEEEEEEKEDEVYSEQPVSYNEQKHSVNKKPGNAVPETNKKSKKKKKKSKADKQVSTKSRDEKSLDSILEDLSIEKKPMQQRVNQNERASGKEIEIDETTPGTSSILSIDPKHLKAENEMRRIFGSKVVDSLENQRNVPSSSTSRLRGVRRVAHNPRKTLLVTPSSYWPPWDKSMSMDIVETKSGFNYFRYIYDPSVSHVQDLFEVAKSANDLNAIAAILAKYPYHPESLLTFAELFKYSGEHQSSADAVEKCLFALECAWHPLFSPLHSNCQLKYSHDTNKPFFTALFSHMKNLDRRGCHRSALEVCKFLLSLDSDDPKGALFCIDYFALRSQQYKWLEQFAEEYQCDNSLWLFPNFSFSLAIARFYVERDATNGEASDHSDKSTSVDLMKQALMLHPLVLRKIVDKAPLKDSSWTQILRNVFFGSAKPGSPSLEHMISIYVERHYIMWRFPELQNLLKDAALLVIESLKQDNREAQDWACVRKEAFSSDKNEYSHLLVSDFSDTTPSLPPEELRPFMVAPGMAHEMPPAEQELGIEVRPRAPREVAGRNPALVFLESLLPWVDYGDNHHDENDQNNDD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.696067 | 2.025924 | 1.195831 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0514900 | RBH | 2.636898 | 3.171182 | 4.834319 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0514900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016510 | RBH | 0.453997 | 9.711024 | 2.958341 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016500 | RBH | 0.210942 | 1.650161 | 3.008127 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016740 | RBH | 2.408618 | 12.276701 | 7.307921 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016490 | RBH | 0.294606 | 0.258128 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016620 | RBH | 8.416837 | 15.552997 | 12.701710 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0337300 | RBH | 4.5153455 | 8.577002 | 7.5246705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016490 | RBH | 0.534323 | 0.460710 | 1.403386 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0324500 | RBH | 4.701779 | 10.6941145 | 7.567525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016490 | RBH | 0.172023 | 0.134668 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016290 | RBH | 0.803644 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016400 | RBH | 1.934890 | 5.186234 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016250 | RBH | 1.270304 | 0.0 | 1.339465 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016370 | RBH | 0.380993 | 3.425282 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016810 | RBH | 0.456819 | 2.011453 | 1.750387 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0016600 | RBH | 2.242087 | 12.062067 | 9.890731 |
