Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g31380 | OGI:09055470 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:18863285-18867497 | ||||||||
| Gene Symbol | JMJ712 | ||||||||||
| DNA seq | TCAAGCATCAGAGGTTACCAGAAGGTACATCGTCATTGTTACATTTGGTATAGTAGCAACTACATGTTTAGTCATAACAGGGGAAGTAACAATGTACATCTGCAATAGTATGGCCACATCCATGCAATAGTGGATGCTAAATCAAAAGGTTCTGTCAGGTTTTCCAAGGTCCCGTGGTCCGGTTCTGCTGTACAAAGACCAGAATGTGACGCTATGAACCCTTTGAAGGTACAACAGTTGAACGCCACCAAAAGCTAACAGAGAAACTAATAGAAAGAGATCTGACGTAATGCCACCATTTTGGTGGAATGTAAAGCAAGTCACCCTCCTCCAATATACAGTCCAAGAAATCAAGATTTTCTACCCGTGGGAACTCCTTCAGATCAACGTTGTCAAGATCTACCTGCACAAACATTTGAGCTGTGTTGATAAATGGGCAGTTAGGAGAAACTATAGGCAGTGCTAAAATTATCATGGGGCTAGAACACTCTGTATCCTCACATCGCACACAACAGAATTGGACATAATGCTTTTAACCAAATAATCTGAGAAATGGTTATGACTAGCAGGTAACTGAAAAGGTTGACCTAGAAAATGGAAGTCAAGCATATTTATTGTTTCCTAATTTAGCTCTTTAAAATGCTCTGATAAGTAGATCCAGCTTGCAATTTCATGCTTAAGAGTAATCAAGAAGAGGATACTAACGCTGAGTTCTTTTCAGCAACTCATTGGCAACTTACTCATTTTCCGTTAGCACGCATCCAAACTGCTAAACGGTGTGTTTCGTGCAAAAGTTTTTTATATAAAAGTTTCTTTAGAAAAATCAAACAAATCCATTTTTTAAGTTTGTAATAATTAATACTCAGTCAATCATGCGCTAATCGCTTGTCTCATTTCGGGTCACATCCAAAATTTCCGCCAAACTGCCCAATTGAATGGCCCAAGAATGCAAATCTTTGGCTCACGATCCATATATATTAAATGGTGATGACCTGCAAATATATATTTTTTCCAAATATGTAACCAATCGAACGGAGTTATGTACCTGACTGGTGTTACTTAGCATAGTTTCTGTGTGTGGGTACAAGTCCTCAGATATGGAAGCAGGATATAGTCTAATATACTTCCTTCCCAATACCTATCAAGGAGAAAGCAAAGATATTATTAACCAATAACTGTTGATAAAAGTTACCAAAAGAAACTGCTGAGTACTGATAGTTATGAACTATGATAGTACTATGCAAACATCTCAAATGGGTCAGCCGTCCACCATCAATGGATTAATGATGTGCAGAAAGGCATTTGAATTTGTCAGCTAAACTCTTAAATATGTATCAGATCGCTATTTTTTTTTGGAAAAGGAGTATCAGATGGATTTGAATGTTTGGACACTCGAATCCTTTGCACCGCAAAGTTTCATTTACAAAGATTGATTCGCTAATATTAGCTTTTTCTTGACTGCTCCAATCAATTAAACTTATCAGATGATCATTGTTGCCAATTTTGAAGAACCGTTTCAATTATTTCAATCAATTAAACTTATCAGATTATCATTGTTGCCAAGTTTGAAGAACTGTTTCAATTATATCTACCTGGTAGCTGACTACGGAATTCTGAGTAGATTTATGCATTTAGACATTACATAGATGACATGTCAATCAGCACCTAATCATAACGTGATGAGTAACATGATAGCATAAACAGTGTGAACAGTTGAACTTGCTCATAGAAAAAAGAGTATTTACTCTAGAAAAAATTATTGACAACAGATCCAAACGGGGAAAAAATATGAAAAGGAGTACTCACACTATACCTGAGCTAAAATGTTGTGATGTGGATCATGGTGCAATGGTGTCACTGTCCCGTGTGGACCAAACCATGCATTAAGTGACTGAAGCTCCCCTCCACCAGCATAACAGTAGTCAGGAACCATTATATCTTCATGGAGCTCTTTTATCTGCAAATGGCACAAAAAAAAAACTGACAATTGGGCTTATACTTACTAGAGAATCCACAATGATAGCATGGTTACCTGTTCAAACAAGGGATGCTGAGCCAGATATGTCAAGTTTGAAGGACAGCCAGCTGACCACATCCTCTCAAGGAACTGAGAGAAAGTGATTAGCTCCTGCTTCCACTCACTGCACACATAATTTTTTCCAACCTGACAGATATTCAATTACATTAGTGCTATATAAGTATTCAGAGGTAGGTCAATACAGGAGGAACTTTCATCATAAAATGTCTTCGAGCAAGCATAATTACTCGATGCATGAAAAAGGTAACTACGGGAGAATAAATGCTGCATACTAATTGGATTAGCCATGTAATTCAGTTGAATAAATAGCATTTTTGAGACACTAAATTAATGGGTAAATATGTTACGACACAACTATTCTACTGTGATCAAATTTCAGGAAAATGTTCCATCACATAGAAGTCTTGTGAATAATAATAATAATCTATGTATGAAAAGATTGTTCATGCAAGAGCGCCGTAGAGTTAATCTAGCTGTACATGTTAAACAATCACACAATCATATAAACCAAATCTTTCGGCAAAATAAGTTCATACAGAAAGAGCATTGAACATAATATGAGTAAGTTAAAATACTGAACCAAATACCATGGCAATATGGCATCAAACTGAAACCAACAAATATGAACGGAACAGCTTAAAATAGGTTCAATCTACCTACTGTTCTGATCACCAAGGCAAAAGATTAGTGTTCCAACTTGCAACCGGAAGAATACATTGTAACACATTTCTCAAAATTGCACCTTTGTACAAGCAAGTTGAGTCAGAGACAAATACAAGATACAAAAATAATCTACTGTAACTTAATGTTACTTGCAGACAGCTGGCCAAGTTCACTAAATATCATATTTTGATGTATATAGGTTGTTTGTTACAAATAAGTAATAAAACTTAGCACCAAATTTAGATGCACTTGTTTATTTTACTTCAATTGAAAAGGGCATAATATTGGCGCTCGAATTTGTTACTATGATCATTAATGCACTATAAAAACTATAAGCATCGAATAGTTTAAACAAAGTTAACTAAACAGAAATGGCTTGTTTCCATATAATAGTCTTCCAGATCTAGTGTAAAGAGCAAAAGGCATTTACTTCAACAGGAACAGTTCGATCTCCAGCAATCTTCTTCAGGTATTGGATGTCTTTCCACTTTGTCCTTGCAGGCCAATGATCGATGCTTCCACTGATTATAACAGGGGACTCGCGTAAAAAGTAATCACATATAAATTCCTCCAAAGAAATGCATGATCGCCTCTCAACCTTCTTACAAGATAAAGACTTTGCCGGAAGAATATTAAGTGCCTGGAAAAAGTACTGTCAGTAGTAATACAAGATGAGCAGAAGGTAATGATTATGAATGCCCTTATCCATACAACAAATTCAGAAAATGAGTAAGCGAAGTGGTAACTAGAATGAACGGTACAAACCATAAGGAGTAATCTACAAATCTTCACTGATCATTCCAGAAAAAAAGATATTCCTACAATTTATGAGTTGATATACGGCAGTTCACCCCTAACAGTTTTTCGCCACCAGTTTGTTCCTTAGCCGGATCTAACTATATATGAAATTATATAGTTGCAGCCATAGTTAATTACGCATACTGCAATGAGCTCCTAAAAAATTAAGCTAAGTTGGAACCCGCATTGCCGCAGAAAAGCGCGCAAAACAAACACGGAATCCTACAAAGGCAACAGCGATCTCACATCGGCGACGTCTCGATTCCTCTCGAGCCCTTCCCTCCACCTCCGGGTCTCCTCGTCGACGGCCTCCGCGTCGCCGCCGCCGCCGGGGTCGGCGACGATGCGCGCTATGGCGGCCTCGAGGTCGGCGCGGAGGAGGTTCCCCCCCATGATGAGGCCCATGTCGAGCGCCCTGAGCGCGGCGCGGCGGTCGGCGGCGGCCGCCCCCAGCCGCCGGAGCCGCGCGACGTGGAGGCAGGCGAGCGCGTAGGCGTCCCTCCACGCGGCGCCCACCTCGCTCCACGGCCCCGAGTGGAGCTGCTCCCACGCCATCTCCCGCGCCGCCTCCGCGGCGCGGAGGTCGCCGCACGCCGCCTTCTCCGCCGACGCCACGAACGCGAACCCGCCCTCCTCGGTTATCTCCCGCAGCAGCGCCGCCCTCCGCCCCTCCTCCGCCTCCGTCGCCGGCGCCGGCGGCTCGCCGCCGGCCAT
More
|
||||||||||
| CDS seq | ATGGCCGGCGGCGAGCCGCCGGCGCCGGCGACGGAGGCGGAGGAGGGGCGGAGGGCGGCGCTGCTGCGGGAGATAACCGAGGAGGGCGGGTTCGCGTTCGTGGCGTCGGCGGAGAAGGCGGCGTGCGGCGACCTCCGCGCCGCGGAGGCGGCGCGGGAGATGGCGTGGGAGCAGCTCCACTCGGGGCCGTGGAGCGAGGTGGGCGCCGCGTGGAGGGACGCCTACGCGCTCGCCTGCCTCCACGTCGCGCGGCTCCGGCGGCTGGGGGCGGCCGCCGCCGACCGCCGCGCCGCGCTCAGGGCGCTCGACATGGGCCTCATCATGGGGGGGAACCTCCTCCGCGCCGACCTCGAGGCCGCCATAGCGCGCATCGTCGCCGACCCCGGCGGCGGCGGCGACGCGGAGGCCGTCGACGAGGAGACCCGGAGGTGGAGGGAAGGGCTCGAGAGGAATCGAGACGTCGCCGATTACTTTTTCCAGGCACTTAATATTCTTCCGGCAAAGTCTTTATCTTGTAAGAAGGTTGAGAGGCGATCATGCATTTCTTTGGAGGAATTTATATGTGATTACTTTTTACGCGAGTCCCCTGTTATAATCAGTGGAAGCATCGATCATTGGCCTGCAAGGACAAAGTGGAAAGACATCCAATACCTGAAGAAGATTGCTGGAGATCGAACTGTTCCTGTTGAAGTTGGAAAAAATTATGTGTGCAGTGAGTGGAAGCAGGAGCTAATCACTTTCTCTCAGTTCCTTGAGAGGATGTGGTCAGCTGGCTGTCCTTCAAACTTGACATATCTGGCTCAGCATCCCTTGTTTGAACAGATAAAAGAGCTCCATGAAGATATAATGGTTCCTGACTACTGTTATGCTGGTGGAGGGGAGCTTCAGTCACTTAATGCATGGTTTGGTCCACACGGGACAGTGACACCATTGCACCATGATCCACATCACAACATTTTAGCTCAGGTATTGGGAAGGAAGTATATTAGACTATATCCTGCTTCCATATCTGAGGACTTGTACCCACACACAGAAACTATGCTAAGTAACACCAGTCAGGTAGATCTTGACAACGTTGATCTGAAGGAGTTCCCACGGATGTACATTGTTACTTCCCCTGTTATGACTAAACATGTAGTTGCTACTATACCAAATGTAACAATGACGATGTACCTTCTGGTAACCTCTGATGCTTGA
More
|
||||||||||
| Protein seq | MAGGEPPAPATEAEEGRRAALLREITEEGGFAFVASAEKAACGDLRAAEAAREMAWEQLHSGPWSEVGAAWRDAYALACLHVARLRRLGAAAADRRAALRALDMGLIMGGNLLRADLEAAIARIVADPGGGGDAEAVDEETRRWREGLERNRDVADYFFQALNILPAKSLSCKKVERRSCISLEEFICDYFLRESPVIISGSIDHWPARTKWKDIQYLKKIAGDRTVPVEVGKNYVCSEWKQELITFSQFLERMWSAGCPSNLTYLAQHPLFEQIKELHEDIMVPDYCYAGGGELQSLNAWFGPHGTVTPLHHDPHHNILAQVLGRKYIRLYPASISEDLYPHTETMLSNTSQVDLDNVDLKEFPRMYIVTSPVMTKHVVATIPNVTMTMYLLVTSDA |
||||||||||
| Function | Lysine-specific demethylase JMJ30 [UniProtKB/Swiss-Prot:Q8RWR1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g31380 | LOC_Os09g31380.1 | Chr09 | 18863285 | 18867497 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCGGCGGCGAGCCGCCGGCGCCGGCGACGGAGGCGGAGGAGGGGCGGAGGGCGGCGCTGCTGCGGGAGATAACCGAGGAGGGCGGGTTCGCGTTCGTGGCGTCGGCGGAGAAGGCGGCGTGCGGCGACCTCCGCGCCGCGGAGGCGGCGCGGGAGATGGCGTGGGAGCAGCTCCACTCGGGGCCGTGGAGCGAGGTGGGCGCCGCGTGGAGGGACGCCTACGCGCTCGCCTGCCTCCACGTCGCGCGGCTCCGGCGGCTGGGGGCGGCCGCCGCCGACCGCCGCGCCGCGCTCAGGGCGCTCGACATGGGCCTCATCATGGGGGGGAACCTCCTCCGCGCCGACCTCGAGGCCGCCATAGCGCGCATCGTCGCCGACCCCGGCGGCGGCGGCGACGCGGAGGCCGTCGACGAGGAGACCCGGAGGTGGAGGGAAGGGCTCGAGAGGAATCGAGACGTCGCCGATTACTTTTTCCAGGCACTTAATATTCTTCCGGCAAAGTCTTTATCTTGTAAGAAGGTTGAGAGGCGATCATGCATTTCTTTGGAGGAATTTATATGTGATTACTTTTTACGCGAGTCCCCTGTTATAATCAGTGGAAGCATCGATCATTGGCCTGCAAGGACAAAGTGGAAAGACATCCAATACCTGAAGAAGATTGCTGGAGATCGAACTGTTCCTGTTGAAGTTGGAAAAAATTATGTGTGCAGTGAGTGGAAGCAGGAGCTAATCACTTTCTCTCAGTTCCTTGAGAGGATGTGGTCAGCTGGCTGTCCTTCAAACTTGACATATCTGGCTCAGCATCCCTTGTTTGAACAGATAAAAGAGCTCCATGAAGATATAATGGTTCCTGACTACTGTTATGCTGGTGGAGGGGAGCTTCAGTCACTTAATGCATGGTTTGGTCCACACGGGACAGTGACACCATTGCACCATGATCCACATCACAACATTTTAGCTCAGGTATTGGGAAGGAAGTATATTAGACTATATCCTGCTTCCATATCTGAGGACTTGTACCCACACACAGAAACTATGCTAAGTAACACCAGTCAGGTAGATCTTGACAACGTTGATCTGAAGGAGTTCCCACGGATGTACATTGTTACTTCCCCTGTTATGACTAAACATGTAGTTGCTACTATACCAAATGTAACAATGACGATGTACCTTCTGGTAACCTCTGATGCTTGA
More
|
|||||||
| Protein seq | MAGGEPPAPATEAEEGRRAALLREITEEGGFAFVASAEKAACGDLRAAEAAREMAWEQLHSGPWSEVGAAWRDAYALACLHVARLRRLGAAAADRRAALRALDMGLIMGGNLLRADLEAAIARIVADPGGGGDAEAVDEETRRWREGLERNRDVADYFFQALNILPAKSLSCKKVERRSCISLEEFICDYFLRESPVIISGSIDHWPARTKWKDIQYLKKIAGDRTVPVEVGKNYVCSEWKQELITFSQFLERMWSAGCPSNLTYLAQHPLFEQIKELHEDIMVPDYCYAGGGELQSLNAWFGPHGTVTPLHHDPHHNILAQVLGRKYIRLYPASISEDLYPHTETMLSNTSQVDLDNVDLKEFPRMYIVTSPVMTKHVVATIPNVTMTMYLLVTSDA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.114165 | 0.965715 | 0.052553 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0489200 | RBH | 2.766795 | 1.911458 | 0.946997 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g39810 | RBH | 2.725888 | 2.565107 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0489200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0014870 | RBH | 0.425865 | 18.317453 | 0.385069 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0014850 | RBH | 0.000000 | 0.852818 | 1.199921 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015080 | RBH | 1.529250 | 4.586778 | 9.918842 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0014910 | RBH | 0.137174 | 0.469323 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0014970 | RBH | 5.249344 | 5.428679 | 1.740984 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0316900 | RBH | 9.364649 | 31.7479725 | 14.967019 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0014820 | RBH | 0.623458 | 0.909099 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0306600 | RBH | 8.184957 | 30.295951 | 37.4009305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0014810 | RBH | 0.115006 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0014650 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0014710 | RBH | 0.000000 | 5.984045 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0014590 | RBH | 1.038729 | 0.0 | 0.128780 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0014680 | RBH | 0.483131 | 7.165507 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015150 | RBH | 0.330331 | 2.749177 | 1.074204 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0014960 | RBH | 1.206427 | 7.297934 | 0.000000 |
