Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g29360 | OGI:09052210 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:17826479-17828460 | ||||||||
| Gene Symbol | OsbHLH046 | ||||||||||
| DNA seq | ATGCTCTCCCATTCCATGGCTCCATCCATTTCGATTCCCAAACAGCCGCAGCTAGAGCTAGAGCTGAGCTAAGCTAGCTATTTCACGTGTCCATCGAGCCAAAGCCAACCTGTTGCTACAAGGTGAGCTGCTGCCGCCTACAACAACCGCGCGCTATCCAATGGAGGAAACCTAGCTTCTTCTTGATCCACAGTTTGTTTTGTGCGTGCAAAAGGTGTCTCGTTGAGAGGTGAGATCCTGCGGAGGCATGGCACTGGAGGCCGTGCTGCTCTCGCGTGGTGATCTGTTTGGTCGTCGTCGTTGCGCCATGGAAGGAGGAGGAGGTGGTTGGAGCAGCCCGTTCAGTGGCTTCGAGGGAGTGATGGATTTGGACGGCGGCAACTGGGACGCCGCCGCGTGCTCATCGATGCTTCTGCATGGCTTCCAGGAGCTAGAGATCCCTGCGGCCGCCGCTGCTGCTGCTGCCATGGCGCCGCCGCCGCCGCCGGTAGAGCCTGCTAATTGCGCGGAGAATGCAGGAGGGGTTGGTGGTCATCAGGAGGATCAGGCTGCGGTGGCGGCAGCGGCGACGGCGGTGCAGTCGGGGAGGAGGAAGCGGCGGCGGGCGAGGGCGGCGAAGAACAAGGAGGAGGTGGAGAGCCAGCGGATGACCCACATTGCCGTCGAGCGCAACCGCCGGAAGCAGATGAACGAGTACCTCGCCGTGCTCCGCTCCCTCATGCCGCCGTCCTACGCGCAAAGGGTAACACAGCTAGCTTGCTAGCTCACCTCACTGCCGGTCATTCCACGGCTTCGCCTCGCCGGCCGGCCGCCGGCCGCCGGCCGTACTGCTTTTGAGTTTTGATTTATCTTGCATTTGCATGGCGTTCTCTCTTCATGCATGTACTGCTTATGTGCGCAGGGTGATCAGGCGTCCATCGTCGGCGGCGCAATCAACTTCGTCAAGGAGCTGGAGCAGCTGCTCCAGTCGCTGGAGGCGCGGAAGAGTTCCCGGCAATGCGCGGCCCACGACGCGGCGGCAGCGGCGGCGCCGTTCGCCAGCTTCTTCACCTTCCCGCAGTACTCGATGAGCGCCGCCGCCGCCGCGGCGCCGGTGGCTCCCGTTGTGAACGAGTTGCACGGCCGTGACGACGGCGGAGCAGGCACCGCCGAGGCCGAGGCGTCAGGGTCGAAGCCGTCGGCGGTGGCCGACGTCGAGGTGACCATGGTGGAGAGCCACGCCAACCTGCGGGTGCTGTCACGGCGGCGGCCGAGGCAGCTGCTCCGGCTGGTGGTGGCGCTGCAGGGCCACCGGCTCACCGTGCTCCACCTCAACATGACCAGCGCCGGCCACATGGTTCTCTACTCGTTCAGCCTCAAGGTAAAAAAAAAATCCAAGTACGACTACTACAAATCTACAATCTACTACGCATTCCTCACATCTAGTACCATTACTAAACAATTTGATCTGATTGCAAACTAAACATATGTGTGGCTCTCAATCCAAGATGCATAGTACCTATATCTGGTTAGCAATATCACACTGAAACAAGTTGTTGGTGCCTAGGTTTCCGTGCATTTTGTATCTTGCTTTGTCTTGCACAACTGCTCCAAATTCCCCCATCTGTTTACTTTAATGGAGCTCAGCTGGAGTAGCTAAAAGGTTGCGGTTCCCTAAAAAAGGGCCATTGTTTGACCTGCCAATGGATCGTCATCTCAAGTGATCTCGTCGTCAATGGCAGGTGGAGGATGATTGCCAGCTTACGTCTGTGGATGAGATTGCAACCGCCGCTCATCAGATCATTGAGAAGATTCAAGAAGAGCAGGGCTGTAGTTTAGATTAGCAATTAGCATACCAACCAACTACGTTTACTAGCATGTATGAATGATGATGATTAGTTGTTCTAGCAAGTGAAGCCACTTCCTTGTGCAAACTAATATTATTGTGCCTTTATGTACTTAGCAGTTTCATTAATCATTAGTGTTGAATCATTTCATAATAA
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| CDS seq | ATGGCACTGGAGGCCGTGCTGCTCTCGCGTGGTGATCTGTTTGGTCGTCGTCGTTGCGCCATGGAAGGAGGAGGAGGTGGTTGGAGCAGCCCGTTCAGTGGCTTCGAGGGAGTGATGGATTTGGACGGCGGCAACTGGGACGCCGCCGCGTGCTCATCGATGCTTCTGCATGGCTTCCAGGAGCTAGAGATCCCTGCGGCCGCCGCTGCTGCTGCTGCCATGGCGCCGCCGCCGCCGCCGGTAGAGCCTGCTAATTGCGCGGAGAATGCAGGAGGGGTTGGTGGTCATCAGGAGGATCAGGCTGCGGTGGCGGCAGCGGCGACGGCGGTGCAGTCGGGGAGGAGGAAGCGGCGGCGGGCGAGGGCGGCGAAGAACAAGGAGGAGGTGGAGAGCCAGCGGATGACCCACATTGCCGTCGAGCGCAACCGCCGGAAGCAGATGAACGAGTACCTCGCCGTGCTCCGCTCCCTCATGCCGCCGTCCTACGCGCAAAGGGGTGATCAGGCGTCCATCGTCGGCGGCGCAATCAACTTCGTCAAGGAGCTGGAGCAGCTGCTCCAGTCGCTGGAGGCGCGGAAGAGTTCCCGGCAATGCGCGGCCCACGACGCGGCGGCAGCGGCGGCGCCGTTCGCCAGCTTCTTCACCTTCCCGCAGTACTCGATGAGCGCCGCCGCCGCCGCGGCGCCGGTGGCTCCCGTTGTGAACGAGTTGCACGGCCGTGACGACGGCGGAGCAGGCACCGCCGAGGCCGAGGCGTCAGGGTCGAAGCCGTCGGCGGTGGCCGACGTCGAGGTGACCATGGTGGAGAGCCACGCCAACCTGCGGGTGCTGTCACGGCGGCGGCCGAGGCAGCTGCTCCGGCTGGTGGTGGCGCTGCAGGGCCACCGGCTCACCGTGCTCCACCTCAACATGACCAGCGCCGGCCACATGGTTCTCTACTCGTTCAGCCTCAAGGTGGAGGATGATTGCCAGCTTACGTCTGTGGATGAGATTGCAACCGCCGCTCATCAGATCATTGAGAAGATTCAAGAAGAGCAGGGCTGTAGTTTAGATTAG
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| Protein seq | MALEAVLLSRGDLFGRRRCAMEGGGGGWSSPFSGFEGVMDLDGGNWDAAACSSMLLHGFQELEIPAAAAAAAAMAPPPPPVEPANCAENAGGVGGHQEDQAAVAAAATAVQSGRRKRRRARAAKNKEEVESQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINFVKELEQLLQSLEARKSSRQCAAHDAAAAAAPFASFFTFPQYSMSAAAAAAPVAPVVNELHGRDDGGAGTAEAEASGSKPSAVADVEVTMVESHANLRVLSRRRPRQLLRLVVALQGHRLTVLHLNMTSAGHMVLYSFSLKVEDDCQLTSVDEIATAAHQIIEKIQEEQGCSLD |
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| Function | Transcription factor bHLH96 [UniProtKB/Swiss-Prot:Q9C7T4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g29360 | LOC_Os09g29360.1 | Chr09 | 17826479 | 17828460 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCACTGGAGGCCGTGCTGCTCTCGCGTGGTGATCTGTTTGGTCGTCGTCGTTGCGCCATGGAAGGAGGAGGAGGTGGTTGGAGCAGCCCGTTCAGTGGCTTCGAGGGAGTGATGGATTTGGACGGCGGCAACTGGGACGCCGCCGCGTGCTCATCGATGCTTCTGCATGGCTTCCAGGAGCTAGAGATCCCTGCGGCCGCCGCTGCTGCTGCTGCCATGGCGCCGCCGCCGCCGCCGGTAGAGCCTGCTAATTGCGCGGAGAATGCAGGAGGGGTTGGTGGTCATCAGGAGGATCAGGCTGCGGTGGCGGCAGCGGCGACGGCGGTGCAGTCGGGGAGGAGGAAGCGGCGGCGGGCGAGGGCGGCGAAGAACAAGGAGGAGGTGGAGAGCCAGCGGATGACCCACATTGCCGTCGAGCGCAACCGCCGGAAGCAGATGAACGAGTACCTCGCCGTGCTCCGCTCCCTCATGCCGCCGTCCTACGCGCAAAGGGGTGATCAGGCGTCCATCGTCGGCGGCGCAATCAACTTCGTCAAGGAGCTGGAGCAGCTGCTCCAGTCGCTGGAGGCGCGGAAGAGTTCCCGGCAATGCGCGGCCCACGACGCGGCGGCAGCGGCGGCGCCGTTCGCCAGCTTCTTCACCTTCCCGCAGTACTCGATGAGCGCCGCCGCCGCCGCGGCGCCGGTGGCTCCCGTTGTGAACGAGTTGCACGGCCGTGACGACGGCGGAGCAGGCACCGCCGAGGCCGAGGCGTCAGGGTCGAAGCCGTCGGCGGTGGCCGACGTCGAGGTGACCATGGTGGAGAGCCACGCCAACCTGCGGGTGCTGTCACGGCGGCGGCCGAGGCAGCTGCTCCGGCTGGTGGTGGCGCTGCAGGGCCACCGGCTCACCGTGCTCCACCTCAACATGACCAGCGCCGGCCACATGGTTCTCTACTCGTTCAGCCTCAAGGTGGAGGATGATTGCCAGCTTACGTCTGTGGATGAGATTGCAACCGCCGCTCATCAGATCATTGAGAAGATTCAAGAAGAGCAGGGCTGTAGTTTAGATTAG
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| Protein seq | MALEAVLLSRGDLFGRRRCAMEGGGGGWSSPFSGFEGVMDLDGGNWDAAACSSMLLHGFQELEIPAAAAAAAAMAPPPPPVEPANCAENAGGVGGHQEDQAAVAAAATAVQSGRRKRRRARAAKNKEEVESQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINFVKELEQLLQSLEARKSSRQCAAHDAAAAAAPFASFFTFPQYSMSAAAAAAPVAPVVNELHGRDDGGAGTAEAEASGSKPSAVADVEVTMVESHANLRVLSRRRPRQLLRLVVALQGHRLTVLHLNMTSAGHMVLYSFSLKVEDDCQLTSVDEIATAAHQIIEKIQEEQGCSLD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.105066 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0468700 | RBH | 0.0 | 0.000000 | 0.460075 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g37730 | RBH | 0.0 | 0.0 | 0.205897 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0468700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0013510 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0013450 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0013710 | RBH | 0.0 | 0.936470 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0013520 | RBH | 0.000000 | 0.178067 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0013620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0298200 | RBH | 1.044376 | 2.1472545 | 0.684525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0013520 | RBH | 0.0 | 0.308081 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0288700 | RBH | 0.9763885 | 1.5904 | 5.737943 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0013510 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013320 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013410 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013340 | RBH | 0.0 | 3.294866 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G013820 | RBH | 0.0 | 1.207643 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0013590 | RBH | 0.0 | 0.000000 | 0.0 |
