Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g28520 | OGI:09050720 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:17350765-17352566 | ||||||||
| Gene Symbol | SG1, OsSG1, Sg1 | ||||||||||
| DNA seq | CCACCCTTCACGGCTTCGCACGCGCCCGCGCGCCGGGCAGATCTAGATGCTATACCCCTCCGCCTGCTACTGCTAGCTCTCCCCCCCCCGTCCCATGCACGCGGTTGCACGCGCCCACGCCGGCCGTAGCATCCGTTCCACTATAAAAACCCCCTCCGGAACCCCACCCCTCCACATTCTCCATAGCTTGGCCACCGTAGTAAAGCCGGCGAGCTAATTCTAGTTCTAGCCAGCTACACGAGATCATCGCTGTGACGGGCGGGGCATTGAGAGGGCGCGTGTGCCGGCCGGGGTCGATGCATGGCATGTGTTAACATGTACAACCCGGAGCATCACCACCACCAGTCGTCGTCGTTCATGGCGCCGAGGATATCCTTTTCCAGCGACTTCGCGCTCGAGCCGCCGCCGCCGGCGCAGCAGCAGCCGGCGGTGCGGGCGCCTGGGGACGCCGACTTCGAGTTCTCCGTCGGCAGCCACCCGATGATGGCCGCCGACCAGCTGATCTCCAAGGGCCGCCTCCTGCCGCTCCGGGAGGCCCCGCACGGCCACGGCGGCGCCGACGCCGGCGGCCGGCCACTCACGCTCCGCGACGAGCTGCGCACGGACAGCCGCCATGGCCGCGTCCCCCGCGCGCCCAACATTCGGTGGAAGGAGTTCCTCGGCCTCAAGAAGGCGCCCAAGAAGGCCCCCACCGCCGACGCTGCCGCCGGCGCCACATCGTCGTCGGCCGACACCCAGATGGTAATAACAAGCTCACTGTTTCTTGCGCCATGAATGCACTCTGCTACAGCTCTGCATTGTCCCATTTTGCTTGTCGCATTGCAACATTTTTCGAATCTTCAAAAACACCCTGCTTGCTGCAAGACCCTCCTGCGCAGTAGAGTACAAGCACTTTCTGCTTCAAAGATTTCTCAAAGTTTGGAGCCTGAGATAGATGTGCATTGCATGCATGTACTACTCATGCATTGCTAACCACCAGAACCAGATTGCACAGAAATTTTAGCGGCACAACTACTCATGCATTGTTAACCATTTTCCTGCTGAAGTGACAACAAAATGTATGCAAAACCCTGTAGGATCTTGGAGGTCAAGGGAGCACGAGAGACTGAAGCAACAAACGCAATGAAGTGTATTACTGATCAATGAGTACTACGTAGTAGTGAAACTGAAGTAGCCATGGTTGGCCAGATCGGATGCATGGTGGCGATGCGCCTTTCAGCTTGCTGTCTGCCATCACTCATATTCACTCTTGCTGATGATCTTAGCAGCTCATTCTAATGGAGAACTCTGCAGGGCAAATGGCCATTTCCTTTTACCTCTTTGCTGCATCTTTTTTGGGTGTAAAAGGGAATTTTGATCTCTAGTTTTTGGGTAATGGTCGTCGTCGGGTAGATGGGTGGTTCCAGTGTAGTCAAATTAACTCCGCTGCGCCTCTGATGTTTTGTATTGGAAGGGCCAGTAAAAATGTATTTTTCCCCACATGGTGTGGTCCTAGCTTAGCTTTTGTACGTGTTGTTTAGCTGTTCCCATGCTTGTCTGCTTCCGCCACCTCCGCTCTCTCCCCCACTTTCCCTATGTACAAAAATGCTTGTAATCTAGTAGTAGCTAGCAATTCAAGCTTTCAGTTCAATGAAGCCCATTTCAACGTTAATTAGCTTCCATCAATTGCTGAACAGTCATGGAGCTAACTAGTACTATGTTCAAATCAGGCAATGCAAGCCTGGCCTGTATTCAAGCAAGATATGGTTCAATTAAAGAAGAATGGAGAGAACGTACAGTGGGGACTATATGGACATATGGTA
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| CDS seq | ATGGCATGTGTTAACATGTACAACCCGGAGCATCACCACCACCAGTCGTCGTCGTTCATGGCGCCGAGGATATCCTTTTCCAGCGACTTCGCGCTCGAGCCGCCGCCGCCGGCGCAGCAGCAGCCGGCGGTGCGGGCGCCTGGGGACGCCGACTTCGAGTTCTCCGTCGGCAGCCACCCGATGATGGCCGCCGACCAGCTGATCTCCAAGGGCCGCCTCCTGCCGCTCCGGGAGGCCCCGCACGGCCACGGCGGCGCCGACGCCGGCGGCCGGCCACTCACGCTCCGCGACGAGCTGCGCACGGACAGCCGCCATGGCCGCGTCCCCCGCGCGCCCAACATTCGGTGGAAGGAGTTCCTCGGCCTCAAGAAGGCGCCCAAGAAGGCCCCCACCGCCGACGCTGCCGCCGGCGCCACATCGTCGTCGGCCGACACCCAGATGGATCTTGGAGGTCAAGGGAGCACGAGAGACTGA
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| Protein seq | MACVNMYNPEHHHHQSSSFMAPRISFSSDFALEPPPPAQQQPAVRAPGDADFEFSVGSHPMMAADQLISKGRLLPLREAPHGHGGADAGGRPLTLRDELRTDSRHGRVPRAPNIRWKEFLGLKKAPKKAPTADAAAGATSSSADTQMDLGGQGSTRD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g28520 | LOC_Os09g28520.1 | Chr09 | 17350765 | 17352566 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCATGTGTTAACATGTACAACCCGGAGCATCACCACCACCAGTCGTCGTCGTTCATGGCGCCGAGGATATCCTTTTCCAGCGACTTCGCGCTCGAGCCGCCGCCGCCGGCGCAGCAGCAGCCGGCGGTGCGGGCGCCTGGGGACGCCGACTTCGAGTTCTCCGTCGGCAGCCACCCGATGATGGCCGCCGACCAGCTGATCTCCAAGGGCCGCCTCCTGCCGCTCCGGGAGGCCCCGCACGGCCACGGCGGCGCCGACGCCGGCGGCCGGCCACTCACGCTCCGCGACGAGCTGCGCACGGACAGCCGCCATGGCCGCGTCCCCCGCGCGCCCAACATTCGGTGGAAGGAGTTCCTCGGCCTCAAGAAGGCGCCCAAGAAGGCCCCCACCGCCGACGCTGCCGCCGGCGCCACATCGTCGTCGGCCGACACCCAGATGGATCTTGGAGGTCAAGGGAGCACGAGAGACTGA
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| Protein seq | MACVNMYNPEHHHHQSSSFMAPRISFSSDFALEPPPPAQQQPAVRAPGDADFEFSVGSHPMMAADQLISKGRLLPLREAPHGHGGADAGGRPLTLRDELRTDSRHGRVPRAPNIRWKEFLGLKKAPKKAPTADAAAGATSSSADTQMDLGGQGSTRD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0459200 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g52490 | RBH | 0.092236 | 0.0 | 0.414293 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0459200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0013000 | RBH | 0.0 | 3.604578 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0012950 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0013210 | RBH | 0.0 | 0.0 | 1.364213 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0013000 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0013090 | RBH | 0.0 | 0.0 | 0.777688 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0289400 | RBH | 0.2000105 | 4.206223 | 4.805458 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0013000 | RBH | 0.0 | 0.110315 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0279300 | RBH | 0.1365415 | 0.693328 | 9.868523 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0012980 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0012780 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0012870 | RBH | 0.0 | 4.342676 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0012760 | RBH | 0.0 | 0.0 | 0.157804 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0012790 | RBH | 0.0 | 0.950534 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G013300 | RBH | 0.0 | 0.0 | 0.482435 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0013080 | RBH | 0.0 | 0.0 | 0.539832 |
