Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g26310 | OGI:09046840 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:15896375-15898021 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAGGAAATCCCCAAAATTGATATGGCAAAGCTATCTGAAATATACAGCCTTGACAAATTACGTTTTGCAAGAGGAGTACAAGCAAATTACAGAGCTAATAACAAGCAGAGCAAGCACATTCCACTTTGGAGGCTACAAGTCTACTACAGCTTCACCCTGCGGACCACTTGCATCAACCCTAATCGTATGAAGAAGATGGATACAAACTTTGAGTTATCATATCCATCAGCCGGCGACCCCCCCATCTTGAATGCTTTCATTTCCTCCACACGCGGACACACCGTGCTGTTTCTCATCAATCCGCCAATTACAACCACACCTATCGTTGTCACGAGGCGATCAATGACGAATCGATCGAACAGGATCAACCCGATGATCACCAAGAAATCGAGCAGCCGAAATCGAATTTGAGCGAGTCAAACCGAGGCACAGCTCGCGCATCCGTGTTCGTGCACCGCACAACCAATGCACGAATCGAATTAAACCCGTTAAAGAATGTGTCGAACGATTAGTTAATTAGAATTAATCAAACGGGGAAGAAATTAACAAACAACAATTATGGATCATCGAAGAGGTGATCGATCGATCGATCGATCATGGTGAGAGGTGGTGCAGGTTGATCCCGGCGGTGACGTTGAAGTAGCTGAACGCCGCCGCCCACCGGCGGTTGTCCTTGAGCATGTGCACGGCGACGGTGTCCGGCCGGAAGTTGTCCATGTCCCAGCTGAGGTCGTACATCCGCGGCTTGAGGTCGTAGCGATTCCGGCCGCGTCCGGCGAGGTTGAGCCACTTCCCGACCATGAGGTCCTCGGGCCCCTCCGTGTCGTTGCGCGCGAGGATCTCCTCCGCCGTGGACACCCACGTCGCGACGTCCCACGACACGACGTACCCCATGCCGTGCATGAACGGCATCGGCTGGCCGCCCATGGCGTAGCCGTAGCCGAGGTAGACGTCGTCGCGGGGCTTGCCGCGGAGCTCGTCGGCGAGCGCCGCCACGCGGAGGTACGTGTCGTCGTCGGTCTTCATGACGTAGTCGTAGGGGGACGACGCGAACAGGCGCGGCACGGAGGAGAGGTACGCGTGCGTCTTGCCGTGGTTCATGTTCTCCTCGCAGCCGCCGAGCACCACGACGTCGCCGTGGCGCGCGGCCTCCAGCGCCACCAGCTGCGCGTCCACCGGGTCGGCCACGCGGCAGAACACGAAGCGGACGTCCACCCGCGCCCGCGCCGCCGCCGGCTGCAGCGCGTACGCCAGCCGCACGATGTCGCGGCGCTCGTACCGCTTCGGCATCGTCAGGACGCCGACGAGCAGGCTCAGCTCGGGCTTCTCCTCCTCCTTCGGCGCCGCCGGCGCCGCGACGGTGTAGTCCTCGGCGCCAGCGCTGCGGCGGGCGCAGAGGACGCCGAGGCCGCCATCGGAGCCGACGCGGGCGCCGTTGAGAGAAGGGAGCAGGAAGACGACGGCGGCGAGGAGGAGCAGCGCGAGCGGGGCGAGGAGGAGGTAGGAGTTGGACGACGCCGGCGCCTTCATCGCCATGGCCGCATGCAAATGCAACGGGAGACAACGTGGTTGGTAGGTGCAATGCAGAACGAGCTGTAGTAGCTGTTATACGCGCACTAATCAAGCTCACGTAATCAAGAATTCCAT
More
|
||||||||||
| CDS seq | ATGGCGATGAAGGCGCCGGCGTCGTCCAACTCCTACCTCCTCCTCGCCCCGCTCGCGCTGCTCCTCCTCGCCGCCGTCGTCTTCCTGCTCCCTTCTCTCAACGGCGCCCGCGTCGGCTCCGATGGCGGCCTCGGCGTCCTCTGCGCCCGCCGCAGCGCTGGCGCCGAGGACTACACCGTCGCGGCGCCGGCGGCGCCGAAGGAGGAGGAGAAGCCCGAGCTGAGCCTGCTCGTCGGCGTCCTGACGATGCCGAAGCGGTACGAGCGCCGCGACATCGTGCGGCTGGCGTACGCGCTGCAGCCGGCGGCGGCGCGGGCGCGGGTGGACGTCCGCTTCGTGTTCTGCCGCGTGGCCGACCCGGTGGACGCGCAGCTGGTGGCGCTGGAGGCCGCGCGCCACGGCGACGTCGTGGTGCTCGGCGGCTGCGAGGAGAACATGAACCACGGCAAGACGCACGCGTACCTCTCCTCCGTGCCGCGCCTGTTCGCGTCGTCCCCCTACGACTACGTCATGAAGACCGACGACGACACGTACCTCCGCGTGGCGGCGCTCGCCGACGAGCTCCGCGGCAAGCCCCGCGACGACGTCTACCTCGGCTACGGCTACGCCATGGGCGGCCAGCCGATGCCGTTCATGCACGGCATGGGGTACGTCGTGTCGTGGGACGTCGCGACGTGGGTGTCCACGGCGGAGGAGATCCTCGCGCGCAACGACACGGAGGGGCCCGAGGACCTCATGGTCGGGAAGTGGCTCAACCTCGCCGGACGCGGCCGGAATCGCTACGACCTCAAGCCGCGGATGTACGACCTCAGCTGGGACATGGACAACTTCCGGCCGGACACCGTCGCCGTGCACATGCTCAAGGACAACCGCCGGTGGGCGGCGGCGTTCAGCTACTTCAACGTCACCGCCGGGATCAACCTGCACCACCTCTCACCATGA
More
|
||||||||||
| Protein seq | MAMKAPASSNSYLLLAPLALLLLAAVVFLLPSLNGARVGSDGGLGVLCARRSAGAEDYTVAAPAAPKEEEKPELSLLVGVLTMPKRYERRDIVRLAYALQPAAARARVDVRFVFCRVADPVDAQLVALEAARHGDVVVLGGCEENMNHGKTHAYLSSVPRLFASSPYDYVMKTDDDTYLRVAALADELRGKPRDDVYLGYGYAMGGQPMPFMHGMGYVVSWDVATWVSTAEEILARNDTEGPEDLMVGKWLNLAGRGRNRYDLKPRMYDLSWDMDNFRPDTVAVHMLKDNRRWAAAFSYFNVTAGINLHHLSP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g26310 | LOC_Os09g26310.1 | Chr09 | 15896375 | 15898021 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGATGAAGGCGCCGGCGTCGTCCAACTCCTACCTCCTCCTCGCCCCGCTCGCGCTGCTCCTCCTCGCCGCCGTCGTCTTCCTGCTCCCTTCTCTCAACGGCGCCCGCGTCGGCTCCGATGGCGGCCTCGGCGTCCTCTGCGCCCGCCGCAGCGCTGGCGCCGAGGACTACACCGTCGCGGCGCCGGCGGCGCCGAAGGAGGAGGAGAAGCCCGAGCTGAGCCTGCTCGTCGGCGTCCTGACGATGCCGAAGCGGTACGAGCGCCGCGACATCGTGCGGCTGGCGTACGCGCTGCAGCCGGCGGCGGCGCGGGCGCGGGTGGACGTCCGCTTCGTGTTCTGCCGCGTGGCCGACCCGGTGGACGCGCAGCTGGTGGCGCTGGAGGCCGCGCGCCACGGCGACGTCGTGGTGCTCGGCGGCTGCGAGGAGAACATGAACCACGGCAAGACGCACGCGTACCTCTCCTCCGTGCCGCGCCTGTTCGCGTCGTCCCCCTACGACTACGTCATGAAGACCGACGACGACACGTACCTCCGCGTGGCGGCGCTCGCCGACGAGCTCCGCGGCAAGCCCCGCGACGACGTCTACCTCGGCTACGGCTACGCCATGGGCGGCCAGCCGATGCCGTTCATGCACGGCATGGGGTACGTCGTGTCGTGGGACGTCGCGACGTGGGTGTCCACGGCGGAGGAGATCCTCGCGCGCAACGACACGGAGGGGCCCGAGGACCTCATGGTCGGGAAGTGGCTCAACCTCGCCGGACGCGGCCGGAATCGCTACGACCTCAAGCCGCGGATGTACGACCTCAGCTGGGACATGGACAACTTCCGGCCGGACACCGTCGCCGTGCACATGCTCAAGGACAACCGCCGGTGGGCGGCGGCGTTCAGCTACTTCAACGTCACCGCCGGGATCAACCTGCACCACCTCTCACCATGA
More
|
|||||||
| Protein seq | MAMKAPASSNSYLLLAPLALLLLAAVVFLLPSLNGARVGSDGGLGVLCARRSAGAEDYTVAAPAAPKEEEKPELSLLVGVLTMPKRYERRDIVRLAYALQPAAARARVDVRFVFCRVADPVDAQLVALEAARHGDVVVLGGCEENMNHGKTHAYLSSVPRLFASSPYDYVMKTDDDTYLRVAALADELRGKPRDDVYLGYGYAMGGQPMPFMHGMGYVVSWDVATWVSTAEEILARNDTEGPEDLMVGKWLNLAGRGRNRYDLKPRMYDLSWDMDNFRPDTVAVHMLKDNRRWAAAFSYFNVTAGINLHHLSP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.050122 | 0.0 | 0.489484 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0433000 | RBH | 0.113767 | 0.0 | 2.051384 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54420 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0433000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0011300 | RBH | 0.0 | 14.409519 | 1.159562 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0011240 | RBH | 0.0 | 7.595839 | 1.888615 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0011500 | SBH | 0.210219 | 21.629477 | 4.177356 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0011270 | SBH | 0.0 | 0.542147 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0011470 | SBH | 0.0 | 9.554809 | 4.164541 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0264400 | RBH | 1.3885305 | 7.7502 | 0.770207 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0011430 | RBH | 0.025637 | 1.065866 | 0.457413 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0254300 | RBH | 1.7503475 | 1.313102 | 0.148478 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011390 | SBH | 0.0 | 0.048871 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0011190 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011280 | SBH | 2.043128 | 10.952730 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0011080 | SBH | 0.092607 | 0.0 | 0.466224 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0011180 | SBH | 0.0 | 4.425478 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011690 | SBH | 0.0 | 1.758228 | 2.172661 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0011490 | SBH | 0.0 | 11.625241 | 2.713814 |
