Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g24580 | OGI:09043390 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:14635600-14636121 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGGCCGCAGCCGTCTCCATGAACTTGAGGAACTCGCGGAAATCGACCCTGCCGTCCTTGTCCGCGTCGTAGGCGTCGATCATGCGCTGGCACTCGGCGTGGCCGGCGCCGGCGGCGAACCCGAGCGAGGCGAGCACGCTCCCGAGCTCGCCGGCGTCGATGAAGCCGTCGCCGTTGCGGTCGAAGACGCGGAACGCCGCCGCGGCCTCCCCCAGGGTGGCCTCCTCCTACTCGAACAGCGCGGACGCCTCCTCGAACCCCACCGACGGCGCGGCGCCGCCCGCGCCGCCCATCAGGCCAAGAACCGTGTCCAGGTCAACCGCCGCCGGCGGCGCCACCGCGGGCGCTGCAGCGGCGCGGCGCCGGGAAGACGAACTCGATGAGGAGGAGGAGGAGGATTTGACGAGGGCGGAGAGGCCGATGGCGATGACGTTGAGGGAGATGGTGAGCACGGCCTGCGCCATGGAGAAGTGGAACGAGTAGGTCGACGACGTGCTCGGCGCCGAATACGCTGCCTCCAT
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| CDS seq | ATGGAGGCAGCGTATTCGGCGCCGAGCACGTCGTCGACCTACTCGTTCCACTTCTCCATGGCGCAGGCCGTGCTCACCATCTCCCTCAACGTCATCGCCATCGGCCTCTCCGCCCTCGTCAAATCCTCCTCCTCCTCCTCATCGAGTTCGTCTTCCCGGCGCCGCGCCGCTGCAGCGCCCGCGGTGGCGCCGCCGGCGGCGGTTGACCTGGACACGGTTCTTGGCCTGATGGGCGGCGCGGGCGGCGCCGCGCCGTCGGAGGAGGCCACCCTGGGGGAGGCCGCGGCGGCGTTCCGCGTCTTCGACCGCAACGGCGACGGCTTCATCGACGCCGGCGAGCTCGGGAGCGTGCTCGCCTCGCTCGGGTTCGCCGCCGGCGCCGGCCACGCCGAGTGCCAGCGCATGATCGACGCCTACGACGCGGACAAGGACGGCAGGGTCGATTTCCGCGAGTTCCTCAAGTTCATGGAGACGGCTGCGGCCTAG
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| Protein seq | MEAAYSAPSTSSTYSFHFSMAQAVLTISLNVIAIGLSALVKSSSSSSSSSSSRRRAAAAPAVAPPAAVDLDTVLGLMGGAGGAAPSEEATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGRVDFREFLKFMETAAA |
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| Function | Probable calcium-binding protein CML45 [UniProtKB/Swiss-Prot:Q9MBG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g24580 | LOC_Os09g24580.1 | Chr09 | 14635600 | 14636121 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGCAGCGTATTCGGCGCCGAGCACGTCGTCGACCTACTCGTTCCACTTCTCCATGGCGCAGGCCGTGCTCACCATCTCCCTCAACGTCATCGCCATCGGCCTCTCCGCCCTCGTCAAATCCTCCTCCTCCTCCTCATCGAGTTCGTCTTCCCGGCGCCGCGCCGCTGCAGCGCCCGCGGTGGCGCCGCCGGCGGCGGTTGACCTGGACACGGTTCTTGGCCTGATGGGCGGCGCGGGCGGCGCCGCGCCGTCGGAGGAGGCCACCCTGGGGGAGGCCGCGGCGGCGTTCCGCGTCTTCGACCGCAACGGCGACGGCTTCATCGACGCCGGCGAGCTCGGGAGCGTGCTCGCCTCGCTCGGGTTCGCCGCCGGCGCCGGCCACGCCGAGTGCCAGCGCATGATCGACGCCTACGACGCGGACAAGGACGGCAGGGTCGATTTCCGCGAGTTCCTCAAGTTCATGGAGACGGCTGCGGCCTAG
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| Protein seq | MEAAYSAPSTSSTYSFHFSMAQAVLTISLNVIAIGLSALVKSSSSSSSSSSSRRRAAAAPAVAPPAAVDLDTVLGLMGGAGGAAPSEEATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGRVDFREFLKFMETAAA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.465960 | 1.726991 | 0.893061 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0412300 | RBH | 1.894047 | 3.377643 | 2.851694 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0412300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010070 | RBH | 0.200396 | 2.758912 | 0.668994 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010020 | RBH | 0.0 | 0.0 | 5.128078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010320 | RBH | 0.461782 | 14.643223 | 1.939964 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010080 | RBH | 0.0 | 0.258499 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010190 | RBH | 1.790436 | 3.802968 | 16.931505 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0246600 | RBH | 9.2931545 | 89.4180795 | 1.838544 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010160 | RBH | 0.704420 | 0.527620 | 2.191891 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0232600 | RBH | 17.1397415 | 111.0388755 | 0.122243 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010150 | RBH | 0.191492 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010070 | RBH | 0.0 | 4.397455 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009890 | RBH | 0.426186 | 0.0 | 1.825954 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009940 | RBH | 0.648716 | 4.298965 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010420 | RBH | 0.588752 | 0.0 | 1.168520 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010220 | RBH | 0.522824 | 0.0 | 9.910148 |
