Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g24490 | OGI:09043250 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:14583473-14586345 | ||||||||
| Gene Symbol | OsbHLH039 | ||||||||||
| DNA seq | TGTATTGTTCCATAAGCCATGTATATATACTTCACAAGGAAATCTAAAAACGATGCGGGCCAATTAATTCCACCTTTCGTTGATATACCCCAAGAGAGATACCACCAGTAGATTTACACACCCACTCGCTGGCCCCCAGCTGCTTTGCACCCTTACATATCCAAGTCATTCCCAACACACACACATGCATTAATTTGTGTAGCACGCGCATGTGTGCACAACAACACACACAAGGGACATATAAAACTTTTCCCTTTCGCACCATGAAGCAGCTGCTCTCGTTATACCAAAGGACCACTACTACTCCCAAAACCAACCCGAAAGCTTGAAAAATAACTAAAAAGTTTGCTACTTTCTCGTCATAGACGCCATGCATGGAAAGTGGTAGCTAGCTAAAATGCCGGCACGTTAGCTGCAACTAGTGTGTGTCACGCTACACCGAGCATTGCTCGTGCACTCCGTAGTTCATTCGCTGCCTCTTGATGCTGCCCCCGCCGCCGCCGGCGACGACAGCGCCGCCGGACGACGACGTGTCGCCGCTGCTCGCCGCCGCCCGGCGGTCCATCACGCCGCGCAGCGCCTCCTGGACCGTGGCTATGCACTCGTGCCTCCGGTGAGACGCCGCGCACTCGTCGTCGTCGTCGGCGGCGGCGCCGGCGCCGTCGATGCCGTGGCGAAGAAGGAGGCGATGCCCGTCCTCGTCGTCGTCGACGTCGTCGCAGTGCTGCTGCTGCTGCTCGTCGGCGGTGATGAGGAGCACGCTGCGGACGCGGCCGCCGAGCGTGGTGATCTCGGCGCGGCGCGCGCGGAGGCGGAGCGCAGCGAGCGCCCGGGCGATGTCCGGGATGAGGTCGGGGCGGTCCTCGCAGCACAGCGACGCACGCACCACGAGCTTCCCTTCCGCGTCCACCGCCGCGTCCACCGCCAGCTCGTCCGCCTCCGTCGGCAGCAGCTGCTGCGCCGCCGCCGACCGCCGCCCCACCACCGCATCGTCGTCGTCCTCGTCGTTGCCGTGGTAATCCCCCGCCGCCGCTGCCGCCGCGATCGCCGTCGTCTGCCGCTTCAGCTCCTTCACGTGCTCGATCACCTCCGCCAGCAGCGACGCCTTGTCCGTCTGCACGCCACACACACATACAATATCACAACCACAAACGTAAGTCAGGGACGGATATACAGTAGAAAGGCCCATATCAGGACACCGACGATTTTCGGTAAAACCTACAGGAAAACTGTTTATTCATATATTATAACACCATAATTTAAATATAATTAGCATACTAGAACATTGATAAACATGTTATGAGTATCACAACAACAACGAATTGATTTTCTGGATCTAGCCACTGACGTAAGTACGAGCTCATCAACAAGCGAGCACTCACGCACGCACGCCGTGGCCACCAAATGATCGATCCATCGGCGCGTGTGAGCTAGCGTCGCAAACCAAGACATACAGACGCGCGCGGCGTGGCGCGATGTGCAGCTTTTCTCACTGCGTTTCTCATGTCTTTTTGAGCTTTACGAACGCTAGGTTGGAGTTCTAAGCTTCTGACACAACAGTGTATGGCTAACGCTCACACTGACACACACACAGACATATGTACAGTGTGTACAGTGTCCAAGAGAGGCAGCGTTTTCGCCGAATGAAATATTTTTTGTCCCCTTGTTGTCTTGTCAGGGGGTTCGGGAGCACATATGGCGTGCGCGCGTGCAGTGGCCGCGTCGTCCTTCCACATTTGCCACTAACTAATGGCCACCACCACCTGGTTAGTGGTGTTTATCCTTTGATTAGTTATACTCCATGTGTTCATTCCACTTAGTACTCCGTACTATATTTGCTCGATGGCCCAATCCTATTAGAGTAGCAACTCCCAGGATATATATGCCATTAGCTAAATGGAAGAAAGCTGAAACTTACTACTATACTAATTGTTTTCAGGCAATCTATGATGATAATACTCAGTTTCTGCTATTTGCTTTTCTTGTCAGATTTATCTAGATAAGCAATCAAAGAACTAGTACTATATAAACTAAGCATCACAAAACTATTCTAGTACTAGCTAGCTACTAATCCCAGCCCATCGTTAACTAGACAAAGTTAAGTCCGTTCATATTTTTTATTGATAGAGCAGAAGAAAAATTACAAGATTATAATCCTAGAAAGTTCATAACCAAGAAAAAGAAAAAAAAATCGCAACCCTGGAAATTACTTCTCTATTATGGATCTTGCATTTCTTGTTCATTTGGTGTTTAGCCATGGACACGAGCCGGAATCAAATCGAGATCGGATTATATTGCGATAAGTGTATAGAGATGATCCAAAATGGCGTACGTGAGTGCAACTGTGTGCGTGTGTATGGATGATCGATCGATGGGTGCAACGGCGTGCATGGCTCACCTTGGTGGTGTTGGGTAGGAGGCTGCGGAGCCTGGCGAGGTGGCCGTTGATGCGCTGCCGGCGCCGCCGCTCGGCCTCGCTGTGGCTCCGCGACGCCGCCAGCGCCTTGGCGTCCATGATCTCCCTCGCCGTCACCCGCCCCAGCTCCGCCTGCAGGCTGCCGAGCAGCCCGGACACCACCGCCGGCTTACCGCCACCGCCTCTCGATGATCCCTCCGCCGCCGCCGCGCCACCACGCTGCTGCCTGGTTACCACCGGCGCCGCCGCGGCCTCGAAACCGAACCCGAACACCCCGCCCTGCCCGACCACGTCGACACACCCTCCGTATCCCCCCACCGCCGCCGCTGCCGGCTCGCCGACGAACCACGGCAGCAGCTGCGCCGCGGCGTCGTGGCTCCCGCCTTCCCACATCGCTAGCTCACCCAACCCACCACCACGTCGTTCTCTCTCTCTCGGTCAAACGGGTGATGGCTTT
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| CDS seq | ATGTGGGAAGGCGGGAGCCACGACGCCGCGGCGCAGCTGCTGCCGTGGTTCGTCGGCGAGCCGGCAGCGGCGGCGGTGGGGGGATACGGAGGGTGTGTCGACGTGGTCGGGCAGGGCGGGGTGTTCGGGTTCGGTTTCGAGGCCGCGGCGGCGCCGGTGGTAACCAGGCAGCAGCGTGGTGGCGCGGCGGCGGCGGAGGGATCATCGAGAGGCGGTGGCGGTAAGCCGGCGGTGGTGTCCGGGCTGCTCGGCAGCCTGCAGGCGGAGCTGGGGCGGGTGACGGCGAGGGAGATCATGGACGCCAAGGCGCTGGCGGCGTCGCGGAGCCACAGCGAGGCCGAGCGGCGGCGCCGGCAGCGCATCAACGGCCACCTCGCCAGGCTCCGCAGCCTCCTACCCAACACCACCAAGACGGACAAGGCGTCGCTGCTGGCGGAGGTGATCGAGCACGTGAAGGAGCTGAAGCGGCAGACGACGGCGATCGCGGCGGCAGCGGCGGCGGGGGATTACCACGGCAACGACGAGGACGACGACGATGCGGTGGTGGGGCGGCGGTCGGCGGCGGCGCAGCAGCTGCTGCCGACGGAGGCGGACGAGCTGGCGGTGGACGCGGCGGTGGACGCGGAAGGGAAGCTCGTGGTGCGTGCGTCGCTGTGCTGCGAGGACCGCCCCGACCTCATCCCGGACATCGCCCGGGCGCTCGCTGCGCTCCGCCTCCGCGCGCGCCGCGCCGAGATCACCACGCTCGGCGGCCGCGTCCGCAGCGTGCTCCTCATCACCGCCGACGAGCAGCAGCAGCAGCACTGCGACGACGTCGACGACGACGAGGACGGGCATCGCCTCCTTCTTCGCCACGGCATCGACGGCGCCGGCGCCGCCGCCGACGACGACGACGAGTGCGCGGCGTCTCACCGGAGGCACGAGTGCATAGCCACGGTCCAGGAGGCGCTGCGCGGCGTGATGGACCGCCGGGCGGCGGCGAGCAGCGGCGACACGTCGTCGTCCGGCGGCGCTGTCGTCGCCGGCGGCGGCGGGGGCAGCATCAAGAGGCAGCGAATGAACTACGGAGTGCACGAGCAATGCTCGGTGTAG
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| Protein seq | MWEGGSHDAAAQLLPWFVGEPAAAAVGGYGGCVDVVGQGGVFGFGFEAAAAPVVTRQQRGGAAAAEGSSRGGGGKPAVVSGLLGSLQAELGRVTAREIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKELKRQTTAIAAAAAAGDYHGNDEDDDDAVVGRRSAAAQQLLPTEADELAVDAAVDAEGKLVVRASLCCEDRPDLIPDIARALAALRLRARRAEITTLGGRVRSVLLITADEQQQQHCDDVDDDEDGHRLLLRHGIDGAGAAADDDDECAASHRRHECIATVQEALRGVMDRRAAASSGDTSSSGGAVVAGGGGGSIKRQRMNYGVHEQCSV |
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| Function | Transcription factor bHLH30 [UniProtKB/Swiss-Prot:Q9S7Y1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g24490 | LOC_Os09g24490.1 | Chr09 | 14583473 | 14586345 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGGGAAGGCGGGAGCCACGACGCCGCGGCGCAGCTGCTGCCGTGGTTCGTCGGCGAGCCGGCAGCGGCGGCGGTGGGGGGATACGGAGGGTGTGTCGACGTGGTCGGGCAGGGCGGGGTGTTCGGGTTCGGTTTCGAGGCCGCGGCGGCGCCGGTGGTAACCAGGCAGCAGCGTGGTGGCGCGGCGGCGGCGGAGGGATCATCGAGAGGCGGTGGCGGTAAGCCGGCGGTGGTGTCCGGGCTGCTCGGCAGCCTGCAGGCGGAGCTGGGGCGGGTGACGGCGAGGGAGATCATGGACGCCAAGGCGCTGGCGGCGTCGCGGAGCCACAGCGAGGCCGAGCGGCGGCGCCGGCAGCGCATCAACGGCCACCTCGCCAGGCTCCGCAGCCTCCTACCCAACACCACCAAGACGGACAAGGCGTCGCTGCTGGCGGAGGTGATCGAGCACGTGAAGGAGCTGAAGCGGCAGACGACGGCGATCGCGGCGGCAGCGGCGGCGGGGGATTACCACGGCAACGACGAGGACGACGACGATGCGGTGGTGGGGCGGCGGTCGGCGGCGGCGCAGCAGCTGCTGCCGACGGAGGCGGACGAGCTGGCGGTGGACGCGGCGGTGGACGCGGAAGGGAAGCTCGTGGTGCGTGCGTCGCTGTGCTGCGAGGACCGCCCCGACCTCATCCCGGACATCGCCCGGGCGCTCGCTGCGCTCCGCCTCCGCGCGCGCCGCGCCGAGATCACCACGCTCGGCGGCCGCGTCCGCAGCGTGCTCCTCATCACCGCCGACGAGCAGCAGCAGCAGCACTGCGACGACGTCGACGACGACGAGGACGGGCATCGCCTCCTTCTTCGCCACGGCATCGACGGCGCCGGCGCCGCCGCCGACGACGACGACGAGTGCGCGGCGTCTCACCGGAGGCACGAGTGCATAGCCACGGTCCAGGAGGCGCTGCGCGGCGTGATGGACCGCCGGGCGGCGGCGAGCAGCGGCGACACGTCGTCGTCCGGCGGCGCTGTCGTCGCCGGCGGCGGCGGGGGCAGCATCAAGAGGCAGCGAATGAACTACGGAGTGCACGAGCAATGCTCGGTGTAG
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| Protein seq | MWEGGSHDAAAQLLPWFVGEPAAAAVGGYGGCVDVVGQGGVFGFGFEAAAAPVVTRQQRGGAAAAEGSSRGGGGKPAVVSGLLGSLQAELGRVTAREIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKELKRQTTAIAAAAAAGDYHGNDEDDDDAVVGRRSAAAQQLLPTEADELAVDAAVDAEGKLVVRASLCCEDRPDLIPDIARALAALRLRARRAEITTLGGRVRSVLLITADEQQQQHCDDVDDDEDGHRLLLRHGIDGAGAAADDDDECAASHRRHECIATVQEALRGVMDRRAAASSGDTSSSGGAVVAGGGGGSIKRQRMNYGVHEQCSV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.103904 | 0.634111 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0410700 | RBH | 0.167221 | 1.026101 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33590 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0410700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0009990 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009940 | RBH | 0.0 | 0.000000 | 0.202180 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010240 | RBH | 0.265118 | 0.0 | 0.839161 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010120 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0245400 | RBH | 0.471933 | 4.360413 | 5.0985685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010090 | RBH | 0.000000 | 0.065131 | 0.155809 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0231400 | RBH | 0.6002215 | 5.7570395 | 6.686029 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010000 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009820 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009870 | RBH | 0.0 | 1.654286 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010350 | RBH | 0.0 | 0.442579 | 0.327209 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010150 | RBH | 0.000000 | 0.0 | 0.0 |
