Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g21460 | OGI:09038120 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:12975276-12977293 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTCACCAAAGATCCATCGGATCAGAAGATATAATTAATGCATTGCGTGAGTTCTGGATCTGATAACATGACTAGTCTAGATTCAAGCCTCTACTCAAACACCAAAACTAGTGATACATCCGCTGATACATCATACAACAAACAGAAGAAATGGCGGAAAAAATAGGCCTAGTATTCTCCGGTCCACGCCTTCCAGTCCTTGTCAATATTCTTCTCAGCCCATGCAATCGCTGCACGCGCAGCCTGAGGTGCCCCAGGAAGCCCCCTCTCTTTGATCTCACCCTTCATGTCCAAGAATGGGTGAACTAGGAGAGTCCCAGGTCCGCAATAATCATGCTCCAAGAAAGTTCCTAGTATCTGTAAGCAAGAATCATACGTTAGCAGTTAGCACCAAACCAGATTTTAGCTCTTGTAAAAGAGCTCACTCAAGGAGAAGCGTAATGGGATTACATTTAATATTGAACTGGCCTACGAAAACAATCTACAAATATAAATGCCTGTACATGGACTAACTGTATCACAGTGACAGACCGACAAGCTTCAAGGAGAATTTAGATCTAACATAGACTGAATTGATTAATAGAACTGAGAACACAACAAAACAATTTAAGCTAAGATAGGTAAAAACTAGTGATAAGCTTTGGTTATTCTTGCAGAGGAATATTCTTAATTCCTGTTACTAACTATTGCCTTCAAGGTACATGCATAATCTGCTTAGTTTGCTGAATATATAAAGACACTTCATAAGTCGTAACTGTTCCTAAAAAACCAGGATCCTTCATAGCGTTTTTATCTCCATTTTAGCAATACCAGACCCAAAGTACAGATGTACACAAGGGAAATGTTGCCATCCATAAGAGATAAGGTGCTAATTTATCAATCTTCATTCACCTGTTAGTTCGGGACTTATCATTTATGGTAGTGTAAAACTCGCTGATTTCCTAATCCTAACACCATTTGTTCTTTCCAACAACAATTTCGATCCATGATTCCTAATCCTAATCCCATTTGTTCTTTTCAACACCAATTTCGATCCATTATCTGTCATCAACCTTGCCAGCACAACCTTTTTCCAATGCTATTGACAGCAATATCAATTCCCGACCTATTTATGTGATTGCACAGCACAAGAACCCTCACCAAGAACCCAATGCAGGCAATTGTGCAGAAGTTGCTGGTCAGATGAGAAGGCAGAAATGCTACAAGCTTAATTTCACTATGAACATTCGTCAGTGGCTCAGTGCAGATGCTGATGATTCCCTCTTTCTTCTAGTGGTCTTCCAGTTACTAGTTCCATGACAATTTTCTTGACCAAATTATCAGTTTGCTCCATCAATACTGACTTAATAGCTTTTCTCAAAGAAACCATTTTCACCCACATTGATGCAATCCTTATGTGACACAGTTATTCAAAAACTCATACCAAAAACCCACTGCAGCAGTTAACTCAAAAACACCCAAGTTACCCCCAAGAAGGCCGAAATGCTACAAACACTTCAAGGAAATCAAGCGCAAGGAAACCATGAACTTGCCTCGGTGCAGACGTCGACGATTTCCTCCACGTGCTCCCCGAAGTAGTCATCCTTCTTCTGCTCCAGCCGCCACATCATGTGCTCCTTGAACTTGCTCGTCTCCTGAAAAACCCCAAAAAAAAGAAAAAAAGGCTAGAATCAGCCAGCTGCGCAGCAAGGAGGAAGCTCCAGTCTACGGAGGGAGAATTGCTGACCTGCGCGGCGAACTCCGGGATGGGGTCCGGGAACTTGTAGTCGTCGTACGCCGCGTTCTTGGCGCGGCGGCACACGAAATCGGCAGGGCGCGGGGCGCGGCTGCGCAGGCGTCCGAGAACCGAACGCCGGAGGCGAGAAGACGACGGCGAGGAGGAGGCGGAGAGAGTGAGGAGAGGAGGGTTTAAGGTCGCCGGCGCCACCGCCGCCGCCCACAACCTCGCCGCCATTTCTGCTCGGAGCGGAGCGCGCGCTCGTCTCTCCCACGGGGCTTATCGCTTCGAGAGGGGGTTAC
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| CDS seq | ATGGCGGCGAGGTTGTGGGCGGCGGCGGTGGCGCCGGCGACCTTAAACCCTCCTCTCCTCACTCTCTCCGCCTCCTCCTCGCCGTCGTCTTCTCGCCTCCGGCGTTCGGTTCTCGGACGCCTGCGCAGCCGCGCCCCGCGCCCTGCCGATTTCGTGTGCCGCCGCGCCAAGAACGCGGCGTACGACGACTACAAGTTCCCGGACCCCATCCCGGAGTTCGCCGCGCAGGAGACGAGCAAGTTCAAGGAGCACATGATGTGGCGGCTGGAGCAGAAGAAGGATGACTACTTCGGGGAGCACGTGGAGGAAATCGTCGACGTCTGCACCGAGATACTAGGAACTTTCTTGGAGCATGATTATTGCGGACCTGGGACTCTCCTAGTTCACCCATTCTTGGACATGAAGGGTGAGATCAAAGAGAGGGGGCTTCCTGGGGCACCTCAGGCTGCGCGTGCAGCGATTGCATGGGCTGAGAAGAATATTGACAAGGACTGGAAGGCGTGGACCGGAGAATACTAG
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| Protein seq | MAARLWAAAVAPATLNPPLLTLSASSSPSSSRLRRSVLGRLRSRAPRPADFVCRRAKNAAYDDYKFPDPIPEFAAQETSKFKEHMMWRLEQKKDDYFGEHVEEIVDVCTEILGTFLEHDYCGPGTLLVHPFLDMKGEIKERGLPGAPQAARAAIAWAEKNIDKDWKAWTGEY |
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| Function | Protein PLASTID REDOX INSENSITIVE 2, chloroplastic [UniProtKB/Swiss-Prot:Q6H612] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g21460 | LOC_Os09g21460.1 | Chr09 | 12975276 | 12977293 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCGAGGTTGTGGGCGGCGGCGGTGGCGCCGGCGACCTTAAACCCTCCTCTCCTCACTCTCTCCGCCTCCTCCTCGCCGTCGTCTTCTCGCCTCCGGCGTTCGGTTCTCGGACGCCTGCGCAGCCGCGCCCCGCGCCCTGCCGATTTCGTGTGCCGCCGCGCCAAGAACGCGGCGTACGACGACTACAAGTTCCCGGACCCCATCCCGGAGTTCGCCGCGCAGGAGACGAGCAAGTTCAAGGAGCACATGATGTGGCGGCTGGAGCAGAAGAAGGATGACTACTTCGGGGAGCACGTGGAGGAAATCGTCGACGTCTGCACCGAGATACTAGGAACTTTCTTGGAGCATGATTATTGCGGACCTGGGACTCTCCTAGTTCACCCATTCTTGGACATGAAGGGTGAGATCAAAGAGAGGGGGCTTCCTGGGGCACCTCAGGCTGCGCGTGCAGCGATTGCATGGGCTGAGAAGAATATTGACAAGGACTGGAAGGCGTGGACCGGAGAATACTAG
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| Protein seq | MAARLWAAAVAPATLNPPLLTLSASSSPSSSRLRRSVLGRLRSRAPRPADFVCRRAKNAAYDDYKFPDPIPEFAAQETSKFKEHMMWRLEQKKDDYFGEHVEEIVDVCTEILGTFLEHDYCGPGTLLVHPFLDMKGEIKERGLPGAPQAARAAIAWAEKNIDKDWKAWTGEY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.670668 | 0.672696 | 0.306804 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0382400 | RBH | 2.477077 | 1.002839 | 1.195026 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0382400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008630 | RBH | 0.527710 | 3.644627 | 1.755854 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008610 | RBH | 0.000000 | 0.0 | 2.313409 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008830 | RBH | 3.924034 | 0.0 | 3.806148 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008650 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008840 | RBH | 11.866847 | 4.238401 | 5.350372 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0219700 | RBH | 36.2061185 | 11.9096755 | 16.0956235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008790 | RBH | 0.957749 | 0.212729 | 1.300603 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0201200 | RBH | 29.5811265 | 4.3854365 | 32.139797 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008770 | RBH | 0.273594 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008580 | RBH | 0.503174 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008480 | RBH | 9.903258 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008520 | RBH | 0.0 | 0.0 | 0.564548 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008520 | RBH | 0.122943 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G009060 | RBH | 0.000000 | 0.0 | 2.000553 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008840 | RBH | 3.600731 | 0.0 | 7.335032 |
