Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g20880 | OGI:09037130 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:12565502-12569202 | ||||||||
| Gene Symbol | RLCK269, OsRLCK269 | ||||||||||
| DNA seq | TGGGGATTGATTCCTGGCCTTCAGATTCAACGTGTGCACTTTCCACACAAGTATAGTTCCAAAGTTTAATTAGTCAAATTTTGAAAGAAAAATGATTTCGCTCTAGCTACCTCAGCTTGAGTCATTTCCAACAGGAACAAATATGTGAGAAATTTTTATACCACCACAAAGCCCCCGCTCTTTCTTTTTTTCTCTGGACTTTGGGCAGAAAATTCCGCAATAAAACCACAAAAAATTTTCTGTACAAACACCAAGATCATCATCATCATCTTCTTCTTCTTCTTCTCCACCGCCATCGTCTTCGCCGGAGTAATCAAATGATTGATATGAACGAGCCAAACGAAGATTGGCAATGGATGCAGCGATCAGATCTTCATGTTGGCGTACATGATGAACTGGAGCTCCTTGACGCAGTCGGCCATGGAGGGGCGGCCGGCGCTCTCGAAGCAGACGCAGCGGGCGGCGAGGCCGGCGAACATGGACACCGACTCCGGCGTGTAGGACGACCTCGCCATGTCCCTGTCCACCACCTTGCGCAGCCGCTTCCGGTCGCCGGACACCTGCTGCATCCTCACGATGAGGTTCTGCTCCGGGGTGCCCTGGCTGAGGTCGATGGCGCGCCGCCCCGTGAGGAGCTCCAGGAGCACGACGCCGAACGCGTACACGTCGCTCTGCAGCGTCAGCTTCCCCGTCTGCAACGACAAGAAACACACAGGAAAGCAGCCATGAACACACATGAGGATCCTCTTCAACGACATCTTCACCAGTGCTTCCGCGGATATTACGCACATGTAGGTAGGCTTTCAACGAAATGCCGGTGAGACTGATCAGGAACATGTCGTTGGTTTCCGTCTCTTAGAGTGTTAATTATAGGGTGCATTTACGGGAATGTGAGTGTGATGCGTGCGTAGTGGTTTGCGTGCTTACGTGTCTGCTATGTAATTGGGGAAAAATAGATTCATCAGCCATGCCCATGGCGATCTGTGCTCACCAGAGCGTACTCCGGATCGAAGTAGCCGAAGGTGCCAAGCACCCTGGTGGTGGCGTACAGGTCGATATCCTGCGGCATCAGCTTGGCCAACCCGAAGTCAGAGATCTGCCATCACCAAGAACACATCACGGTGAAGTTTATACTGCATATTTGCAGCGAAATTTTTACTGTAATTTTTTTTTTTACCTTAGCCTCAAAGTGCTCGGTGAGGAGGATGTTGCTGGACTTGAAGTCGCGGTGGACGACGGGGACGCCGACAGCGGTGGTGGAGTGGAGGTAGGCGAGCCCCCTCGCGGCGCCCAGCGCTATTCGCAGCCGCACCGGCCAGTCCATCCTCACCTCTCCTATCCCTGCAACAAAAATGTCCATAAGCTCTGACACAAAATTTACGGTGTTTTCTACTGGTAGTACATAATTTTCTTTTCGACTTTTGTACAATTGAACAGTTTCATACGAAATACCTGTAGAAACCTTATGTTTTTTTTTTGGTTTTGTATAATTGAAAAATGAGATAAACATTTTTGGCAGCTGAGAAATTACCATTGAGGATGTCTTGCAGGTTGCCTTTGGGCATGAACTCGTAGACGACAAACCGGTGCTTGCCGTCAGCACAATAGCCGATCAGAGTGACCAGATTGGGGTGATCTAACCTGCTCAGGATGTCGATCTCTACTCGGAATTCGCGCTCGCCGTCGGCTTGTTTCGATGTAGGTAGATCCATCTTCTTGATGGCAACAATCTTCAGAATCATCACAAACAACATTTTTACTAGGCTGTAAACAATCTCTTAAGCAATGTAACTCAAAGTTCTGAAACCGCTGAATTACTTGTACTAATTCAGTGAGGGCCCCTCTAAATCGCAGGGTTAAAAAAACGGAGGAATAGAAAAAACATAGGATTTTGATAAAAATGAAAGTGTAAAACAGAGAATTGCAAAACACAGAAAAAACATAGGAATGATCGTTTGATTAGACCGCAAGAAATACATAGGAATCGGATGAGAGAGATAGACTCATTGAAAATTTTCCAAAAGGTTAGAGCCCTTGCTCATTGAAAAATCCACATGCAAAGTGTCACTCCACAGGAATTTCATAGAATTTGGAAAGCTTCAATCCTTTGAATCAAAATAGTCAAACAGAAAAATTTCTTATAGGATTTAAATCCTATAAAATTCTTACATAAATCTCAAAGGGGCCCTGTAGTTCAGAGCTTGTGTTTCAAGATTGTTCTTGGGGATTGATCGGTGGTTTGATCATATTTGACTGGTGGTTGGCACTTCCTTTTCTTGAGTTTGATGCCAAGGCGAAATGTCACCACCGTACTGATCCTGGCTGTCTGAAGGACTAATCAAATTCTAGCTCAGTTAATGTGTCACCTACAGGATTCAATATTGGGGCCAAATACGTGCAACCGAGACAGGAAATTCTCTTCCGATTCCAACCGTTGATGAGGCTGGTGGTGCCAATAATTGTCTGAAAATTACGGATGCAAATGCCAGTACATGACAAAGCTAGTAGTAATGTCTTATGCGCTCAAATCGAAAATATACTTATCATTTATCAACAATTCTGAAGTTCTCAACCTGAAACTCTGAACTGAATTTTGCTGAAAAATGAATGAACTCACCTGTCCATCTTTCAGAACTCCTCTGTAAACGCGCCCAAATCCGCCCTTGCCGATGAGGTTCCTCTCACTGAACATGTTGGTCGCCTCCTCCATCTCCTTGAGCGTGAACACCATGGAGCAGCTGCTCCTCTTCTTCGCCGGCGGCGGCGGCAGCGCCGCCGCCGCCGTCCCCTGCTCCTTCATCTGCCAATGCCATAGCTCTGCCGGCTTGTACACCCCTGCAAAAGAAAAAAGAAACAGAAAAACAGAGTTTCAGATGTGATACAAAGAACACATACAATTCTTGCGGTTGCAGGTTGCACTCACAAGGGTTCAGTTGATCGAGCGATTTGCTTCTCCTCCTCTTGTTCCATGACGAGACGATGTTGTTGAACATCCTGGATTGTGTCCGATCACTCTCTGAACAAGCTACCTTCGTCGCCGCCGCCGCTGCTTGTCTGAAGATCTTTTGTGCTGGAAGAATCTAATTCCCGATATACCTTGCCGGCGATCAAGAACTGGGGAGATATATTCCTTGCTCCAGCCCAAGGTCACACTGCAACTTTACATGAAAAAGGCAAAATGTCCTGCTACAACAATGGCTGCCGCTGCAAGCAACATATCAGAAAAAAAATATATTCAGAAACATGGCAAAGAAACCCAATGGATCAAGATTAGCAAGAACACTGACAAGGTTGACCCTGATGAGCTGATGAACTGATCAAGAAGAGCTGTGAGTGAGCATGAGCAACAAGGACAGGTGAGAGTGAGAGGACAAGATCGGCAATGGAGCCTAGTACATGGTCTCCGAATGAGGCTCAAGATCAGAGCCTAGATAGAGACCTACTCTAGACGAGACGACACGGTCTCTTTGGATCCAAGTACAAGGGAGACGCGCCACCTACACCTAGAGGAGGCGTTTGGCAAAGAAGTAAAGGAATGGGCAGCAGCTTAGCTACTTATGGATCAAGAAACCCGCCACAAAAACTGATGATCCCGCAATTGCGCATTCGATCGATCGACGATCGTCGGCTGCGCAATTGATCTTTGGGGAGAAGAAGATGGAGTTGGAAGAGTTTGGGCCAAGAAGAAGAGGAGCGTGTGG
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| CDS seq | ATGTTCAACAACATCGTCTCGTCATGGAACAAGAGGAGGAGAAGCAAATCGCTCGATCAACTGAACCCTTGGGTGTACAAGCCGGCAGAGCTATGGCATTGGCAGATGAAGGAGCAGGGGACGGCGGCGGCGGCGCTGCCGCCGCCGCCGGCGAAGAAGAGGAGCAGCTGCTCCATGGTGTTCACGCTCAAGGAGATGGAGGAGGCGACCAACATGTTCAGTGAGAGGAACCTCATCGGCAAGGGCGGATTTGGGCGCGTTTACAGAGGAGTTCTGAAAGATGGACAGATTGTTGCCATCAAGAAGATGGATCTACCTACATCGAAACAAGCCGACGGCGAGCGCGAATTCCGAGTAGAGATCGACATCCTGAGCAGGTTAGATCACCCCAATCTGGTCACTCTGATCGGCTATTGTGCTGACGGCAAGCACCGGTTTGTCGTCTACGAGTTCATGCCCAAAGGCAACCTGCAAGACATCCTCAATGGGATAGGAGAGGTGAGGATGGACTGGCCGGTGCGGCTGCGAATAGCGCTGGGCGCCGCGAGGGGGCTCGCCTACCTCCACTCCACCACCGCTGTCGGCGTCCCCGTCGTCCACCGCGACTTCAAGTCCAGCAACATCCTCCTCACCGAGCACTTTGAGGCTAAGATCTCTGACTTCGGGTTGGCCAAGCTGATGCCGCAGGATATCGACCTGTACGCCACCACCAGGGTGCTTGGCACCTTCGGCTACTTCGATCCGGAGTACGCTCTGACGGGGAAGCTGACGCTGCAGAGCGACGTGTACGCGTTCGGCGTCGTGCTCCTGGAGCTCCTCACGGGGCGGCGCGCCATCGACCTCAGCCAGGGCACCCCGGAGCAGAACCTCATCGTGAGGATGCAGCAGGTGTCCGGCGACCGGAAGCGGCTGCGCAAGGTGGTGGACAGGGACATGGCGAGGTCGTCCTACACGCCGGAGTCGGTGTCCATGTTCGCCGGCCTCGCCGCCCGCTGCGTCTGCTTCGAGAGCGCCGGCCGCCCCTCCATGGCCGACTGCGTCAAGGAGCTCCAGTTCATCATGTACGCCAACATGAAGATCTGA
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| Protein seq | MFNNIVSSWNKRRRSKSLDQLNPWVYKPAELWHWQMKEQGTAAAALPPPPAKKRSSCSMVFTLKEMEEATNMFSERNLIGKGGFGRVYRGVLKDGQIVAIKKMDLPTSKQADGEREFRVEIDILSRLDHPNLVTLIGYCADGKHRFVVYEFMPKGNLQDILNGIGEVRMDWPVRLRIALGAARGLAYLHSTTAVGVPVVHRDFKSSNILLTEHFEAKISDFGLAKLMPQDIDLYATTRVLGTFGYFDPEYALTGKLTLQSDVYAFGVVLLELLTGRRAIDLSQGTPEQNLIVRMQQVSGDRKRLRKVVDRDMARSSYTPESVSMFAGLAARCVCFESAGRPSMADCVKELQFIMYANMKI |
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| Function | Probable serine/threonine-protein kinase PBL28 [UniProtKB/Swiss-Prot:Q84M95] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g20880 | LOC_Os09g20880.1 | Chr09 | 12565502 | 12568905 | - | MSU_osa1r7 | ||
| CDS seq | ATGTTCAACAACATCGTCTCGTCATGGAACAAGAGGAGGAGAAGCAAATCGCTCGATCAACTGAACCCTTGGGTGTACAAGCCGGCAGAGCTATGGCATTGGCAGATGAAGGAGCAGGGGACGGCGGCGGCGGCGCTGCCGCCGCCGCCGGCGAAGAAGAGGAGCAGCTGCTCCATGGTGTTCACGCTCAAGGAGATGGAGGAGGCGACCAACATGTTCAGTGAGAGGAACCTCATCGGCAAGGGCGGATTTGGGCGCGTTTACAGAGGAGTTCTGAAAGATGGACAGATTGTTGCCATCAAGAAGATGGATCTACCTACATCGAAACAAGCCGACGGCGAGCGCGAATTCCGAGTAGAGATCGACATCCTGAGCAGGTTAGATCACCCCAATCTGGTCACTCTGATCGGCTATTGTGCTGACGGCAAGCACCGGTTTGTCGTCTACGAGTTCATGCCCAAAGGCAACCTGCAAGACATCCTCAATGGGATAGGAGAGGTGAGGATGGACTGGCCGGTGCGGCTGCGAATAGCGCTGGGCGCCGCGAGGGGGCTCGCCTACCTCCACTCCACCACCGCTGTCGGCGTCCCCGTCGTCCACCGCGACTTCAAGTCCAGCAACATCCTCCTCACCGAGCACTTTGAGGCTAAGATCTCTGACTTCGGGTTGGCCAAGCTGATGCCGCAGGATATCGACCTGTACGCCACCACCAGGGTGCTTGGCACCTTCGGCTACTTCGATCCGGAGTACGCTCTGACGGGGAAGCTGACGCTGCAGAGCGACGTGTACGCGTTCGGCGTCGTGCTCCTGGAGCTCCTCACGGGGCGGCGCGCCATCGACCTCAGCCAGGGCACCCCGGAGCAGAACCTCATCGTGAGGATGCAGCAGGTGTCCGGCGACCGGAAGCGGCTGCGCAAGGTGGTGGACAGGGACATGGCGAGGTCGTCCTACACGCCGGAGTCGGTGTCCATGTTCGCCGGCCTCGCCGCCCGCTGCGTCTGCTTCGAGAGCGCCGGCCGCCCCTCCATGGCCGACTGCGTCAAGGAGCTCCAGTTCATCATGTACGCCAACATGAAGATCTGA
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| Protein seq | MFNNIVSSWNKRRRSKSLDQLNPWVYKPAELWHWQMKEQGTAAAALPPPPAKKRSSCSMVFTLKEMEEATNMFSERNLIGKGGFGRVYRGVLKDGQIVAIKKMDLPTSKQADGEREFRVEIDILSRLDHPNLVTLIGYCADGKHRFVVYEFMPKGNLQDILNGIGEVRMDWPVRLRIALGAARGLAYLHSTTAVGVPVVHRDFKSSNILLTEHFEAKISDFGLAKLMPQDIDLYATTRVLGTFGYFDPEYALTGKLTLQSDVYAFGVVLLELLTGRRAIDLSQGTPEQNLIVRMQQVSGDRKRLRKVVDRDMARSSYTPESVSMFAGLAARCVCFESAGRPSMADCVKELQFIMYANMKI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g20880 | LOC_Os09g20880.2 | Chr09 | 12565502 | 12569202 | - | MSU_osa1r7 | ||
| CDS seq | ATGTTCAACAACATCGTCTCGTCATGGAACAAGAGGAGGAGAAGCAAATCGCTCGATCAACTGAACCCTTGGGTGTACAAGCCGGCAGAGCTATGGCATTGGCAGATGAAGGAGCAGGGGACGGCGGCGGCGGCGCTGCCGCCGCCGCCGGCGAAGAAGAGGAGCAGCTGCTCCATGGTGTTCACGCTCAAGGAGATGGAGGAGGCGACCAACATGTTCAGTGAGAGGAACCTCATCGGCAAGGGCGGATTTGGGCGCGTTTACAGAGGAGTTCTGAAAGATGGACAGATTGTTGCCATCAAGAAGATGGATCTACCTACATCGAAACAAGCCGACGGCGAGCGCGAATTCCGAGTAGAGATCGACATCCTGAGCAGGTTAGATCACCCCAATCTGGTCACTCTGATCGGCTATTGTGCTGACGGCAAGCACCGGTTTGTCGTCTACGAGTTCATGCCCAAAGGCAACCTGCAAGACATCCTCAATGGGATAGGAGAGGTGAGGATGGACTGGCCGGTGCGGCTGCGAATAGCGCTGGGCGCCGCGAGGGGGCTCGCCTACCTCCACTCCACCACCGCTGTCGGCGTCCCCGTCGTCCACCGCGACTTCAAGTCCAGCAACATCCTCCTCACCGAGCACTTTGAGGCTAAGATCTCTGACTTCGGGTTGGCCAAGCTGATGCCGCAGGATATCGACCTGTACGCCACCACCAGGGTGCTTGGCACCTTCGGCTACTTCGATCCGGAGTACGCTCTGACGGGGAAGCTGACGCTGCAGAGCGACGTGTACGCGTTCGGCGTCGTGCTCCTGGAGCTCCTCACGGGGCGGCGCGCCATCGACCTCAGCCAGGGCACCCCGGAGCAGAACCTCATCGTGAGGATGCAGCAGGTGTCCGGCGACCGGAAGCGGCTGCGCAAGGTGGTGGACAGGGACATGGCGAGGTCGTCCTACACGCCGGAGTCGGTGTCCATGTTCGCCGGCCTCGCCGCCCGCTGCGTCTGCTTCGAGAGCGCCGGCCGCCCCTCCATGGCCGACTGCGTCAAGGAGCTCCAGTTCATCATGTACGCCAACATGAAGATCTGA
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| Protein seq | MFNNIVSSWNKRRRSKSLDQLNPWVYKPAELWHWQMKEQGTAAAALPPPPAKKRSSCSMVFTLKEMEEATNMFSERNLIGKGGFGRVYRGVLKDGQIVAIKKMDLPTSKQADGEREFRVEIDILSRLDHPNLVTLIGYCADGKHRFVVYEFMPKGNLQDILNGIGEVRMDWPVRLRIALGAARGLAYLHSTTAVGVPVVHRDFKSSNILLTEHFEAKISDFGLAKLMPQDIDLYATTRVLGTFGYFDPEYALTGKLTLQSDVYAFGVVLLELLTGRRAIDLSQGTPEQNLIVRMQQVSGDRKRLRKVVDRDMARSSYTPESVSMFAGLAARCVCFESAGRPSMADCVKELQFIMYANMKI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.079645 | 0.0 | 0.479903 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0375600 | RBH | 0.129519 | 0.0 | 2.081536 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0375600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008210 | RBH | 0.0 | 21.368435 | 2.673128 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008190 | RBH | 0.000000 | 4.195437 | 0.149855 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008420 | RBH | 0.0 | 15.548916 | 2.286594 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008220 | RBH | 0.0 | 0.485804 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008370 | RBH | 0.0 | 21.263182 | 8.762709 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0214000 | RBH | 3.6295265 | 1.601562 | 0.0854925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008310 | RBH | 0.0 | 0.942322 | 0.417393 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0194900 | RBH | 4.9785885 | 0.172745 | 0.2012335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008290 | RBH | 0.000000 | 0.086703 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008100 | RBH | 0.079551 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008010 | RBH | 0.0 | 15.908516 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008040 | RBH | 0.000000 | 0.0 | 0.204835 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008060 | RBH | 0.042798 | 13.423765 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G008610 | RBH | 0.0 | 0.434927 | 1.897642 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008410 | RBH | 0.0 | 14.405337 | 4.580770 |
