Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g20350 | OGI:09036360 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:12216432-12218346 | ||||||||
| Gene Symbol | ERF50, OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6 | ||||||||||
| DNA seq | CCCCGCCCACCATTCCCACTTTCGCCCACACACACACCCAGATCCACAGCCATCCTCCCACCGCCGCCGCCACCATCTCCAAGCCCACGAACACCCACAGCCACCGTGAGCTCGAGCGAGGTAAGAAAAGCTTTAGATCTGAGCGACTTCGAGCGTCTTCAAGGTAAAGTTTTCTCGAAACCCTCTTCTTCTTCTTCCTCCTCTGGCTCCCCCACCTGTTCTTCTACGGTTTCTTGGTTAGGTTGCTTGCAGAGAGCGAGAGACCCAGGGCCTTTTAGATCCAGGGCTCCCAGATCTGCTGTTTTTCTTTCATCTTCTTTGTGTTCTAGTGTTAGGTTGGTAGCCAAGAGGGGTTCTTTTTCCACACCTCACTTGCTAGATCTACCACCAAAAAGCCATCTGTTTTTTTACTGTGGCTGTCGATTTCTCCCTCCTTCCTGCCTGTTCTTGATTTTGGATTCGGAACCAGGCAAATCTTTGTTACTACTGTTTTAGTATCAGAAAAAAAAATCCCAAAAAAAAGAGTGAGTAGATGGCTGCAGCTATAGATCTGTCAGGGGAGGAGCTGATGAGAGCACTCGAGCCTTTTATCCGAGATGCCTCCGGCTCGCCTCCGGTTTGTTCCCAGTTTAGTCCCACCTCGCCATTCTCCTTCCCGCACGCGTTCGCGTACGGTGGCGGGCTGGCCCAGCAGCCAGAGCTCAGCCCGGCCCAGATGCACTACATCCAGGCCCGCCTCCACCTCCAGCGGCAGGCGGCGCAGGCCGGCCCGCTCGGCCCGCGCGCGCAGCCGATGAAGGCGTCGTCGTCGTCGGCTTCGGCGGCGGGGGCGGCGGCGACGCCGCCGCGGCCGCAGAAGCTGTACCGCGGCGTGCGGCAGCGGCACTGGGGGAAGTGGGTGGCGGAGATCCGCCTCCCGCGGAACCGCACGCGGCTCTGGCTCGGCACCTTCGACACAGCCGAGGAGGCGGCGCTTGCCTACGACCAGGCGGCGTACCGCCTCCGCGGCGACGCGGCGCGGCTCAACTTCCCCGACAACGCCGCCTCCCGCGGCCCGCTCCACGCCTCCGTCGACGCCAAGCTCCAGACGCTCTGCCAGAACATCGCCGCCGCCAAGAACGCCAAGAAGTCCTCTGTCTCCGCCTCCGCCGCCGCAACATCCTCCGCGCCCACCAGCAACTGCTCGTCGCCGTCCTCCGACGACGCGTCGTCCTGCCTGGAGTCCGCCGACTCGTCGCCCTCCCTGTCGCCGTCCTCCGCCGCCACCACGGCCGAGACGCCGGCGACCGTGCCGGAGATGCAGCAGCTCGACTTCAGCGAGGCGCCGTGGGACGAGGCCGCCGCCTTCGCCCTCACCAAGTACCCGTCCTACGAGATCGACTGGGACTCCCTCCTCGCCGCCAATTAACACCACCACCACTTCTTGGCTAGTACTCACGCCGTCGTTAGCCTAATCGTCGCCGCCGCCGCCGCCGTGCAGATGGGATTTTAGACATTCTGCACCGCACGGACGGGCATGGATTAGCAGTTTTATAGTCCCTAATCCTTTTGGTTTGGTTCGTTTGTGTACGTAGATCGATCTCTCTCCGGACTTGTTTCCTCTGTAGATGCTAGGGTTGGTTGGTGTTCTTCCTCAACCGGAGACGCCGATGCTACCGGCAGCCGGCGTTTTTGTGTCCGGCGTGCGTCTCCGGTGGCCGGTCACTGGTCGGTTACTCCGGCCGTGGCGTCCATTGCTCTTCTAAAGTCTGTTATTACCTTCTACTGCTGATCTTACAGGTTGTAAACAGTAGTAGTAGCATTATTATTATTATTATGTCTTGTAATATTATTAGCGTGTTATAAGAACTTGTAATGTGAATTACCTCTACTACTACTATTATTATTATTTAGCGTCGTTGTTAAAATTGTTGTG
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| CDS seq | ATGGCTGCAGCTATAGATCTGTCAGGGGAGGAGCTGATGAGAGCACTCGAGCCTTTTATCCGAGATGCCTCCGGCTCGCCTCCGGTTTGTTCCCAGTTTAGTCCCACCTCGCCATTCTCCTTCCCGCACGCGTTCGCGTACGGTGGCGGGCTGGCCCAGCAGCCAGAGCTCAGCCCGGCCCAGATGCACTACATCCAGGCCCGCCTCCACCTCCAGCGGCAGGCGGCGCAGGCCGGCCCGCTCGGCCCGCGCGCGCAGCCGATGAAGGCGTCGTCGTCGTCGGCTTCGGCGGCGGGGGCGGCGGCGACGCCGCCGCGGCCGCAGAAGCTGTACCGCGGCGTGCGGCAGCGGCACTGGGGGAAGTGGGTGGCGGAGATCCGCCTCCCGCGGAACCGCACGCGGCTCTGGCTCGGCACCTTCGACACAGCCGAGGAGGCGGCGCTTGCCTACGACCAGGCGGCGTACCGCCTCCGCGGCGACGCGGCGCGGCTCAACTTCCCCGACAACGCCGCCTCCCGCGGCCCGCTCCACGCCTCCGTCGACGCCAAGCTCCAGACGCTCTGCCAGAACATCGCCGCCGCCAAGAACGCCAAGAAGTCCTCTGTCTCCGCCTCCGCCGCCGCAACATCCTCCGCGCCCACCAGCAACTGCTCGTCGCCGTCCTCCGACGACGCGTCGTCCTGCCTGGAGTCCGCCGACTCGTCGCCCTCCCTGTCGCCGTCCTCCGCCGCCACCACGGCCGAGACGCCGGCGACCGTGCCGGAGATGCAGCAGCTCGACTTCAGCGAGGCGCCGTGGGACGAGGCCGCCGCCTTCGCCCTCACCAAGTACCCGTCCTACGAGATCGACTGGGACTCCCTCCTCGCCGCCAATTAA
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| Protein seq | MAAAIDLSGEELMRALEPFIRDASGSPPVCSQFSPTSPFSFPHAFAYGGGLAQQPELSPAQMHYIQARLHLQRQAAQAGPLGPRAQPMKASSSSASAAGAAATPPRPQKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDQAAYRLRGDAARLNFPDNAASRGPLHASVDAKLQTLCQNIAAAKNAKKSSVSASAAATSSAPTSNCSSPSSDDASSCLESADSSPSLSPSSAATTAETPATVPEMQQLDFSEAPWDEAAAFALTKYPSYEIDWDSLLAAN |
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| Function | Ethylene-responsive transcription factor RAP2-4 [UniProtKB/Swiss-Prot:Q8H1E4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g20350 | LOC_Os09g20350.1 | Chr09 | 12216432 | 12218346 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTGCAGCTATAGATCTGTCAGGGGAGGAGCTGATGAGAGCACTCGAGCCTTTTATCCGAGATGCCTCCGGCTCGCCTCCGGTTTGTTCCCAGTTTAGTCCCACCTCGCCATTCTCCTTCCCGCACGCGTTCGCGTACGGTGGCGGGCTGGCCCAGCAGCCAGAGCTCAGCCCGGCCCAGATGCACTACATCCAGGCCCGCCTCCACCTCCAGCGGCAGGCGGCGCAGGCCGGCCCGCTCGGCCCGCGCGCGCAGCCGATGAAGGCGTCGTCGTCGTCGGCTTCGGCGGCGGGGGCGGCGGCGACGCCGCCGCGGCCGCAGAAGCTGTACCGCGGCGTGCGGCAGCGGCACTGGGGGAAGTGGGTGGCGGAGATCCGCCTCCCGCGGAACCGCACGCGGCTCTGGCTCGGCACCTTCGACACAGCCGAGGAGGCGGCGCTTGCCTACGACCAGGCGGCGTACCGCCTCCGCGGCGACGCGGCGCGGCTCAACTTCCCCGACAACGCCGCCTCCCGCGGCCCGCTCCACGCCTCCGTCGACGCCAAGCTCCAGACGCTCTGCCAGAACATCGCCGCCGCCAAGAACGCCAAGAAGTCCTCTGTCTCCGCCTCCGCCGCCGCAACATCCTCCGCGCCCACCAGCAACTGCTCGTCGCCGTCCTCCGACGACGCGTCGTCCTGCCTGGAGTCCGCCGACTCGTCGCCCTCCCTGTCGCCGTCCTCCGCCGCCACCACGGCCGAGACGCCGGCGACCGTGCCGGAGATGCAGCAGCTCGACTTCAGCGAGGCGCCGTGGGACGAGGCCGCCGCCTTCGCCCTCACCAAGTACCCGTCCTACGAGATCGACTGGGACTCCCTCCTCGCCGCCAATTAA
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| Protein seq | MAAAIDLSGEELMRALEPFIRDASGSPPVCSQFSPTSPFSFPHAFAYGGGLAQQPELSPAQMHYIQARLHLQRQAAQAGPLGPRAQPMKASSSSASAAGAAATPPRPQKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDQAAYRLRGDAARLNFPDNAASRGPLHASVDAKLQTLCQNIAAAKNAKKSSVSASAAATSSAPTSNCSSPSSDDASSCLESADSSPSLSPSSAATTAETPATVPEMQQLDFSEAPWDEAAAFALTKYPSYEIDWDSLLAAN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 14.436816 | 15.086642 | 5.290026 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0369050 | RBH | 13.999475 | 15.031861 | 9.532153 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31580 | RBH | 1.255226 | 2.990048 | 1.466264 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0369000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007830 | RBH | 5.359574 | 26.607195 | 55.932499 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007820 | RBH | 5.266484 | 39.410118 | 29.818871 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008040 | RBH | 13.631431 | 36.224617 | 52.151360 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007880 | RBH | 1.763468 | 2.393901 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008020 | RBH | 37.455463 | 105.864540 | 135.685989 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0210700 | RBH | 29.3058965 | 127.985302 | 71.209507 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007980 | RBH | 3.380229 | 5.500738 | 12.439819 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0191000 | RBH | 11.845284 | 63.450577 | 25.8550815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007920 | RBH | 1.197518 | 0.749667 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007740 | RBH | 2.661860 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007650 | RBH | 51.374134 | 43.773228 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007700 | RBH | 1.089859 | 0.0 | 5.630758 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007710 | RBH | 7.126554 | 64.958778 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G008280 | RBH | 3.155578 | 26.222759 | 24.783857 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008070 | RBH | 27.681429 | 68.678886 | 85.105301 |
