Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g19330 | OGI:09034360 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:11563902-11565177 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGCAAATAAGTTCTAAAAATTTCAAGAAAAATCCATAAAGTGTAATTAATTATGGAGAACTTCATAAAAAATAAATTCAGCCATATCATTTTATTTACACACTTACTTTACTTTTAAATTAATTTAAACACCTACCTACTTAAAAAATATCAAGTATTCCAGGAAATTTGTATTTAATTAATTACATAATTAAATCTTTCTCAACTTCTCCTCAATTTTCTCATCTCTTTTTCCCGTTGCAACGCACGGGCATTTTTTCGTATGTTTGTCTATATATACATACATACATATATATATATATATGCGCTAAACCGCGCCCAATGTGCATTATAACTAAAACGCTCCCCTCACATACCCCCATACCCCCACCCCGGGGCTAATGCGCGACTAGTTGCGCGGATAGCTGCTACTATACTAGTACTAGTTTATTACTAGTAGTACTACCACTACACTAATATTACTAGTAGTACTACTACACTATAATACTACTAATATTACTACTATAATATATATACATATATTATATTTATATATTTTTGATGTATAAAAAATATACACATATACAAACTTTATATACGATGTGTACAAACTTTGTATACGATGTATACAAACTTTGTATATACGTCGTATATAAAGTTTGTATACACGTATACAAAGTTTGCATGTGCGTATACAAACTTTGTATACAAGTATACAAACTTTATATACGTACGTATACAAAGTTTGTATACGTGTTGTATATAAAGTTTGCATACACGTACACAAAGTTTATATGCACGTATACAAAGTTTGTATACACATATACAAACTTTTTATAGGTATATGTAAGTGCTAAAAGACCGAAAAGAAAAAACCGGAAAGAAAACCGGAAAAAACTAAAGAGAGAAGCAAAAACAGAAAAAAAAAAACCAACAGGAAAAAACGTGGGCCCCACCCCCAACGCATGCGCTGCCGCGCGGCCCCCTCCGCGCGCGCCACGTGCCTCGCCCCCCGCGCGGCTGATCGCTCGTTAGGTCCATGATGCCGTTGATCTCGTCGGTGATGTCGTGGCGCGTCTTGGCCTTCCGGAGGAAGCCGGCCACCTTGTTCATCACCATCCCTTTGGAGCCGTGGTTGTCGTCGTCGACGCGCTCGCGCACCATGAAGGTGTCGAGGACGTCGTCGGCGTCGTAGGAGAGCTCCCTGACGTCGCGCGCCCAAAGCTTGACCTGCTCGTCGAGCTGGTCGGAGGGCATGTCGCCGACCTTGCGGAGGGCGGCCGGCATGCTCTCCAT
More
|
||||||||||
| CDS seq | ATGGAGAGCATGCCGGCCGCCCTCCGCAAGGTCGGCGACATGCCCTCCGACCAGCTCGACGAGCAGGTCAAGCTTTGGGCGCGCGACGTCAGGGAGCTCTCCTACGACGCCGACGACGTCCTCGACACCTTCATGGTGCGCGAGCGCGTCGACGACGACAACCACGGCTCCAAAGGGATGGTGATGAACAAGGTGGCCGGCTTCCTCCGGAAGGCCAAGACGCGCCACGACATCACCGACGAGATCAACGGCATCATGGACCTAACGAGCGATCAGCCGCGCGGGGGGCGAGGCACGTGGCGCGCGCGGAGGGGGCCGCGCGGCAGCGCATGCGTTGGGGAACTTATTTGCTAA |
||||||||||
| Protein seq | MESMPAALRKVGDMPSDQLDEQVKLWARDVRELSYDADDVLDTFMVRERVDDDNHGSKGMVMNKVAGFLRKAKTRHDITDEINGIMDLTSDQPRGGRGTWRARRGPRGSACVGELIC |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g19330 | LOC_Os09g19330.1 | Chr09 | 11563902 | 11565177 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGAGCATGCCGGCCGCCCTCCGCAAGGTCGGCGACATGCCCTCCGACCAGCTCGACGAGCAGGTCAAGCTTTGGGCGCGCGACGTCAGGGAGCTCTCCTACGACGCCGACGACGTCCTCGACACCTTCATGGTGCGCGAGCGCGTCGACGACGACAACCACGGCTCCAAAGGGATGGTGATGAACAAGGTGGCCGGCTTCCTCCGGAAGGCCAAGACGCGCCACGACATCACCGACGAGATCAACGGCATCATGGACCTAACGAGCGATCAGCCGCGCGGGGGGCGAGGCACGTGGCGCGCGCGGAGGGGGCCGCGCGGCAGCGCATGCGTTGGGGAACTTATTTGCTAA
More
|
|||||||
| Protein seq | MESMPAALRKVGDMPSDQLDEQVKLWARDVRELSYDADDVLDTFMVRERVDDDNHGSKGMVMNKVAGFLRKAKTRHDITDEINGIMDLTSDQPRGGRGTWRARRGPRGSACVGELIC |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19310 | RBH | 0.273135 | 1.233273 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007200 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007190 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007380 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007360 | SBH | 7.472719 | 11.783668 | 16.315662 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007340 | SBH | 0.218820 | 0.0 | 0.087875 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0178900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007130 | SBH | 0.156467 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007030 | RBH | 0.944937 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0050940 | SBH | 0.641090 | 0.0 | 0.314016 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
