Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g19280 | OGI:09034360 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:11540747-11543436 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAACGTCTGCAAAAACTCAGCTTCTCTATCTCCTTGAGAAGCTCACGGTCAAAGTTACATTCGTAGAGTCTTAAGTACCTTAGGTGAAATAAGTTACAAACATGCCTAAGATCAAGATGGCAACCTTCTGTAAGATAACAATTTTCTAGATCCAGCACACGTAGAACCTGGAAGCTTGAAAGAGATGGTAATAAACTAACACCAGAACTACTGAATATAGAAAGCGACCTCACTTGTGACATCTTCAGGTTGGTCTGAGCTGTGCTGTTCTCTAGCTTGTTATTCTGGAGAGAGAGCCTACGAACCTTGCTTGCTGGAGATGTCTGTTGCAAAATGCCATCCATTACAGTAACAAAGTTCTCTTTAGATGACAAGGATCGGATAAGATCATGAATCATATCATGCACACGACAAGAATGTAGCATACCACTAACATAACCTGATGGTTGGATGAGGCTTCGATTTATAAGCTCATTAAAGTAACTATCTGCTAACTCGAACAAGTTGTCCCCATCCTTTTCTGGATGGATGAAACCTTCAGATATCCACATCCTTATTAATCGAGATCTTTCAATTTCATAATCTTCGGGAAATATACTCAGATAAAGTAAGCAGGTCCTTAGGTGGGAAGGTAAATTGTGATAGCTAAGTGACAGTATCTTTCTCATGTTTTTCATATCATGGTTGTTTCCAAGTCCATAGCCAATTGAATTATACACCTTGTACCACTCTTCTGCCATGTTTCTAGTTCTAGCCAACACAATAGCTATAGTTATGATAGCTAATGGTACATCGCTGCATTTCTTCAATATCTTTCCAGATACTTCAACTAACTCTTGTGGACATTTGTCCTCGGAGCCAAATATTCTCCCGTAGAATAATTTTTTAGAGCTCTTGGGTGGAAGGGTTTTTAGTTTATGAGGACTACCTATTTGTTCCGCAATATCGAAATCACGGGTAGTTGCAATTATTGTGCTCCCATCATTGTTTTCCACCAAAGCACATCTAATTGCACTCCATGATGCTATATCCCATATGTCATCAATTACAATTATGTACCTACGTGCGTGTGGAAATCTATATTAATATTAACACAAGAGAGTCAAGTGTTTCAAAAATAAAAACAGAGATGTCTAAATGTTCTTTGCCAAAGGTACTACATAAAAATGAAAATCTGCTAAAAAGAGGTAGGGCCTCATCGGATGGCTGTTTTAGCTGAGACTTTTTAGCCAAAGCGTCTCGCTTATTAGGCTGAGAACTTTCAGCCAAATATAGATAGGGCCCGCAAATGAGTTGGAGCAGAAAATCCTCATCAAGCCATTTAAGCCAAAAGTCAATCAATGAATTTTCTTTAGCTGAATTGAAGAAACCAACTTTGGCTGATCAGCCGAAGCTTTTGGCCTACCGACGAGGACTACAAAGGTTTTTGAAACAAGAAACAACAAATTTGTCGTACCATGTAACATGCTCAGTAAAAATTTACATACAAATGTAAACATGATAAAATATTAGTTGCAACAACATTTTATTATTCATCAAGAAATAAAATGCATATGAAACTATCACTTGCATTAAATTTGTAGTTCTTTTAACCGTGCAAGTTCAGCATTATATGTAGCACAACATTAGTGGACCACAAATAAGAAAGACTTATACTCCATAACAAAAACCGCAGAGGTAAAACGCCGTGATATGATGCATGCTTACCTCTTGTTCTGAATGAAATCTCTGAGCTCATCAATGAGCTGCTTCTCATCCCTGACTAGGTTATGGATGTCCTTGTTCTTTGTCTTGTCGAGCTCAAGCAGCATGTCCTTGAAAACTTTCTTAATATCAGGAGCGCTGGAAACAGAGACAAATGCCGTGCAGTCGAACTGAGGTTTAAGCCTGTTGCACACCGCTCTGGCAAGAGTCGTCTTGCCCAACCCTCCTCCTCCAACGACAGTGCCAACGCGTTCATCAGCTCGTCGCTTGCCTCGTCGATGCCAACCAGCTCCGCCTCGTCTCTGTACAGGCCGTATAGCCGCGGATCGCAGCCGCCGGTGGCGGCGGAGGCGGCACCGTTGTTGAACCGGGCGACAACGGTGTCGGTGACATGGGACCGGGAGTATCATGACTAGAGGTTTGGGCAGGAGCAATCACCCACGTGGCCTGACCCCCTCGGGGGGGGGGGGGGGTCGGGCCCGAGGGTGATGAGGCCGCCACTCTCTTCGTCTCCCCGAGGGGTCGGACCGCTCCCGTTTCGGCCCCGAGGGCCGAGGCGCCCCGACCCCTTATGGGTTTTGCGCCGCGTGTATGGGTTAGGTGAGCACAGCGAGGCTCACCTAACCGCATTTATTGCAGGTTTGAACGAGCGCGTCACGCCGCATGTAACGCAGTGCAGCGCGCTCGTTTATCCGGTCTGTGACCGGTCACAGACCGGTCAGATCGTGGGTTAGGTGACAACAGGCGGTCTGACACACGCCTCGCCCCATCCCGTCAGGATAAGAGCCTCCAGGCACTTGTCCCTAGCCGGAGCCAGCGTGCTAGCTCCTGGAGATGGCACGTTGGTCCCGGTCAGATATATGCCAGGCTTCATCCCAACCGTTACAAGCAAGACATTGTATGAAGAAGGGCGAACATGCAGATTGATAAACTGACGCGTGGTGGACAAGAATGACCGATTTGTGACCGGCCTGACACTGGTCAT
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| CDS seq | ATGACCAGTGTCAGGCCGGTCACAAATCGGTCATTCTTGTCCACCACGCGTCAGTTTATCAATCTGCATGTTCGCCCTTCTTCATACAATGTCTTGCTTGTAACGGTTGGGATGAAGCCTGGCATATATCTGACCGGGACCAACGTGCCATCTCCAGGAGCTAGCACGCTGGCTCCGGCTAGGGACAAGTGCCTGGAGGCTCTTATCCTGACGGGATGGGGCGAGGCCGCTCCTGATATTAAGAAAGTTTTCAAGGACATGCTGCTTGAGCTCGACAAGACAAAGAACAAGGACATCCATAACCTAGTCAGGGATGAGAAGCAGCTCATTGATGAGCTCAGAGATTTCATTCAGAACAAGAGATTTCCACACGCACGTAGGTACATAATTGTAATTGATGACATATGGGATATAGCATCATGGAGTGCAATTAGATGTGCTTTGGTGGAAAACAATGATGGGAGCACAATAATTGCAACTACCCGTGATTTCGATATTGCGGAACAAATAGGTAGTCCTCATAAACTAAAAACCCTTCCACCCAAGAGCTCTAAAAAATTATTCTACGGGAGAATATTTGGCTCCGAGGACAAATGTCCACAAGAGTTAGTTGAAGTATCTGGAAAGATATTGAAGAAATGCAGCGATGTACCATTAGCTATCATAACTATAGCTATTGTGTTGGCTAGAACTAGAAACATGGCAGAAGAGTGGTACAAGGTGTATAATTCAATTGGCTATGGACTTGGAAACAACCATGATATGAAAAACATGAGAAAGATACTGTCACTTAGCTATCACAATTTACCTTCCCACCTAAGGACCTGCTTACTTTATCTGAGTATATTTCCCGAAGATTATGAAATTGAAAGATCTCGATTAATAAGGATGTGGATATCTGAAGGTTTCATCCATCCAGAAAAGGATGGGGACAACTTGTTCGAGTTAGCAGATAGTTACTTTAATGAGCTTATAAATCGAAGCCTCATCCAACCATCAGGTTATGTTAGTGGTATGCTACATTCTTGTCGTGTGCATGATATGATTCATGATCTTATCCGATCCTTGTCATCTAAAGAGAACTTTGTTACTGTAATGGATGGCATTTTGCAACAGACATCTCCAGCAAGCAAGGTTCGTAGGCTCTCTCTCCAGAATAACAAGCTAGAGAACAGCACAGCTCAGACCAACCTGAAGATGTCACAAGTGAGGTCGCTTTCTATATTCAGTAGTTCTGGTGTTAGTTTATTACCATCTCTTTCAAGCTTCCAGGTTCTACGTGTGCTGGATCTAGAAAATTGTTATCTTACAGAAGGTTGCCATCTTGATCTTAGGCATGTTTGTAACTTATTTCACCTAAGGTACTTAAGACTCTACGAATGTAACTTTGACCGTGAGCTTCTCAAGGAGATAGAGAAGCTGAGTTTTTGCAGACGTTGA
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| Protein seq | MTSVRPVTNRSFLSTTRQFINLHVRPSSYNVLLVTVGMKPGIYLTGTNVPSPGASTLAPARDKCLEALILTGWGEAAPDIKKVFKDMLLELDKTKNKDIHNLVRDEKQLIDELRDFIQNKRFPHARRYIIVIDDIWDIASWSAIRCALVENNDGSTIIATTRDFDIAEQIGSPHKLKTLPPKSSKKLFYGRIFGSEDKCPQELVEVSGKILKKCSDVPLAIITIAIVLARTRNMAEEWYKVYNSIGYGLGNNHDMKNMRKILSLSYHNLPSHLRTCLLYLSIFPEDYEIERSRLIRMWISEGFIHPEKDGDNLFELADSYFNELINRSLIQPSGYVSGMLHSCRVHDMIHDLIRSLSSKENFVTVMDGILQQTSPASKVRRLSLQNNKLENSTAQTNLKMSQVRSLSIFSSSGVSLLPSLSSFQVLRVLDLENCYLTEGCHLDLRHVCNLFHLRYLRLYECNFDRELLKEIEKLSFCRR |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g19280 | LOC_Os09g19280.1 | Chr09 | 11540747 | 11543436 | - | MSU_osa1r7 | ||
| CDS seq | ATGACCAGTGTCAGGCCGGTCACAAATCGGTCATTCTTGTCCACCACGCGTCAGTTTATCAATCTGCATGTTCGCCCTTCTTCATACAATGTCTTGCTTGTAACGGTTGGGATGAAGCCTGGCATATATCTGACCGGGACCAACGTGCCATCTCCAGGAGCTAGCACGCTGGCTCCGGCTAGGGACAAGTGCCTGGAGGCTCTTATCCTGACGGGATGGGGCGAGGCCGCTCCTGATATTAAGAAAGTTTTCAAGGACATGCTGCTTGAGCTCGACAAGACAAAGAACAAGGACATCCATAACCTAGTCAGGGATGAGAAGCAGCTCATTGATGAGCTCAGAGATTTCATTCAGAACAAGAGATTTCCACACGCACGTAGGTACATAATTGTAATTGATGACATATGGGATATAGCATCATGGAGTGCAATTAGATGTGCTTTGGTGGAAAACAATGATGGGAGCACAATAATTGCAACTACCCGTGATTTCGATATTGCGGAACAAATAGGTAGTCCTCATAAACTAAAAACCCTTCCACCCAAGAGCTCTAAAAAATTATTCTACGGGAGAATATTTGGCTCCGAGGACAAATGTCCACAAGAGTTAGTTGAAGTATCTGGAAAGATATTGAAGAAATGCAGCGATGTACCATTAGCTATCATAACTATAGCTATTGTGTTGGCTAGAACTAGAAACATGGCAGAAGAGTGGTACAAGGTGTATAATTCAATTGGCTATGGACTTGGAAACAACCATGATATGAAAAACATGAGAAAGATACTGTCACTTAGCTATCACAATTTACCTTCCCACCTAAGGACCTGCTTACTTTATCTGAGTATATTTCCCGAAGATTATGAAATTGAAAGATCTCGATTAATAAGGATGTGGATATCTGAAGGTTTCATCCATCCAGAAAAGGATGGGGACAACTTGTTCGAGTTAGCAGATAGTTACTTTAATGAGCTTATAAATCGAAGCCTCATCCAACCATCAGGTTATGTTAGTGGTATGCTACATTCTTGTCGTGTGCATGATATGATTCATGATCTTATCCGATCCTTGTCATCTAAAGAGAACTTTGTTACTGTAATGGATGGCATTTTGCAACAGACATCTCCAGCAAGCAAGGTTCGTAGGCTCTCTCTCCAGAATAACAAGCTAGAGAACAGCACAGCTCAGACCAACCTGAAGATGTCACAAGTGAGGTCGCTTTCTATATTCAGTAGTTCTGGTGTTAGTTTATTACCATCTCTTTCAAGCTTCCAGGTTCTACGTGTGCTGGATCTAGAAAATTGTTATCTTACAGAAGGTTGCCATCTTGATCTTAGGCATGTTTGTAACTTATTTCACCTAAGGTACTTAAGACTCTACGAATGTAACTTTGACCGTGAGCTTCTCAAGGAGATAGAGAAGCTGAGTTTTTGCAGACGTTGA
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| Protein seq | MTSVRPVTNRSFLSTTRQFINLHVRPSSYNVLLVTVGMKPGIYLTGTNVPSPGASTLAPARDKCLEALILTGWGEAAPDIKKVFKDMLLELDKTKNKDIHNLVRDEKQLIDELRDFIQNKRFPHARRYIIVIDDIWDIASWSAIRCALVENNDGSTIIATTRDFDIAEQIGSPHKLKTLPPKSSKKLFYGRIFGSEDKCPQELVEVSGKILKKCSDVPLAIITIAIVLARTRNMAEEWYKVYNSIGYGLGNNHDMKNMRKILSLSYHNLPSHLRTCLLYLSIFPEDYEIERSRLIRMWISEGFIHPEKDGDNLFELADSYFNELINRSLIQPSGYVSGMLHSCRVHDMIHDLIRSLSSKENFVTVMDGILQQTSPASKVRRLSLQNNKLENSTAQTNLKMSQVRSLSIFSSSGVSLLPSLSSFQVLRVLDLENCYLTEGCHLDLRHVCNLFHLRYLRLYECNFDRELLKEIEKLSFCRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.047773 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0357400 | RBH | 0.569904 | 2.197771 | 0.185573 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19310 | SBH | 0.273135 | 1.233273 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0357400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007180 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007170 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007360 | RBH | 0.000000 | 0.0 | 0.491535 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007360 | RBH | 7.472719 | 11.783668 | 16.315662 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0199500 | RBH | 0.005107 | 0.0273765 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007340 | RBH | 0.218820 | 0.0 | 0.087875 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0178300 | RBH | 0.869135 | 12.9933795 | 0.2543615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007130 | RBH | 0.156467 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007030 | SBH | 0.944937 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0050940 | RBH | 0.641090 | 0.0 | 0.314016 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007070 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007630 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007430 | RBH | 0.0 | 0.0 | 0.0 |
