Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g19150 | OGI:09018720 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:11441886-11444551 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTAAGATTATAATCATTGTTTGTTATTCGACGAATTTAAGGCGTCAGTTGTAAAAATTGCATCAGAAATTTAGGATTATAATCATCGTTAATAGCATATATTCTAATAAGTGCGAACATATTATAGTTTGTGTATAATAAAATGCTACTTTATTTTTAAAATATTCGTTCTGGTGTGATGATCCGCCATAGCTAAATTTTTATGCTGGGTCCGCCACTGCTTGTATCTAGCATCCATATGAGGAACTTTGACTTCGTTCTTCATACAAAAAGAGGTGACTTCTTTTTAAAAATTCTCCCACCCATCGTCTTGCCGCAACATCTCCAATTGCATCTTTGTCAAAATAATGAGCTCAACCGCATTCACAATATCTTGCTCCCTCCTTTGCAAAGTTATGTTTAAGTCATCTGTGTATCCAAGAATAGTGTTCAATAAACGTGCCATGAAAACAAACTCAAATGACACAAATGATCAAAATGCAATTTGAACTTTCATAGTTTCCGCGCTTTGTGAACGACCTTTTCCAACTTGTAATAGGACCTTCCGGATTGAGCGATACAAAATAAGAATATGTTGCACTGTTTTATAGTGAGATCTCCAATGTGTATCTCCTGGCCTACCTAAACCCATCTCTTGATTCAGACCCTGCCCACTTTCAATTTCACCAAATTCCAAAGCTTCTACAATCTCTTGAGCTTGAGCAACTCGAAGCATTTCATGTTTCTTACAAGAAATCCCAATAGTAATCAACAAATATCCAAGTTGCTCAAAAAACCAAACACAGTCACCATTCTCCCTAGCAACAGCCACAAGAGTTAACTATAGTTGATGTGCAAAACAATGAACATAATAAGCAGAAGGAGATTCATTCATAATCAGCTTCTTTAGACCATTAACCTCACCCTTCATGTTACTAGCCCCATCATATCCTTGACCATGAACTTTAGACAAGCTAAATGATTGTTGCATCTCTACGTATCAAGGCTGTAGTATTCTCAACATGCACAACACCAGGAAAGCGCTCAACAACCCTCCCTTTCTTGTCAATATAACACAAGCAAAGTGCCAACTGCTCATTTTGATACACATCGCTAGACTCATCAGCAAGAATTAAAAAAAACTCATCCCCAAGATCTTCCATGAGAAGTTTAGTAGTTTCTCTAGCACAACATCCAATAAGTTATTTTTGTATCTTAGGGGATGTCATTTTACAATTCTTTGGAGCATTCTTTAGAACAACCTCGTTGACCTCTTTGAAATTTCTAGCCAACCAATTTAGAAGCTCAAGAAAATTTCCTCTATTGAGTGATTCTTCACTTTCATTATGCCCACGACAAGCCAACCCTTGCCGTAAAAGAAATCTCAAGCACTTAAGTGAGTAAGTTAAGCGGGCCTTATAAACAACCTTGTCATGTTTGCTTCTCTTCCTTAAATTCTCACCAATTGTTGTATTAGGTCTAATGATCGACATATTATATTTCTCTTGAGCTAGATTATGTGCACTACTAACAGAACCAACATGCTTATCAAATCTATCCAAATGGTTTCATTGTCTAAAGCCCTCATTCACATAACTATCCCCACCAACATAATTAGTTCTATCTTTGAACAAGTAGCAAACAAAACAGAATGCAACATCCTTTTCCTCGCTATATTCAAGCCAACTATACTTATCAAACCAGCTACTTATGAAACGACGTTTACCTCCACAATTTCTTTGAGGAAATTGCTCTAGTGGTGGTCGACAAGGCCCAAGTGCAATATACTTCATCCTCACTGCATCTTGCTGATTCACACTATAATCTGAGATGGCAATCCTCTTTCCAGGATCATGTGGTAGAAAACCAACATCCTCATCAACATCTTCTAGCCAATCTTCCTCTTTAGATTCTGAAATTGCAACATGAGGTTTGGATATTTCTATGTTGCCATCTATATCTTGAGGTCTTGATACTTCTATACTTTCATAGGGCACATGAGTTTCTGTTTCTGCAAATCCAACTTCACATGCTCTACTACACCCAATCTTCTCAGTTGCAGGTGCATGTGTAGTAGGTTCAGTGTCTTTCCTCACAACTGAATGCTCAGAAATATTATTGCTGTCAACTATAGGCTTTAGTTTCTTTTCAGCTCTACCCCACATTGATTTCAAATCCACAAATGTCTTCTTCTCTGAAGGCTCTACCACCTAAATCACAAAATTATGTGTGCAACAAATCAATCAATCGCTCAATTCTTAATTTTTCCCAATCAATTGGAGGACAAGATTGAAATACAAATTGCAAAGACAGTAATTTACTGACCTTCTTTTCCATGGCTGTCGGCGTTGGCCTCGGTTCTTCTCCTTCCTCAGCATTCTCCTGCTGCACTTGCTTCCCCGGATGCGGCACCAGTGGCAGCAAGAGAGGTGCTGGCGGCAAGGGTGCCAGGGCCGGGTTAGGGTTGGGCGTGAGGGAAGCGGCGAGAGAAGGGGCAAGAGGAGGAGCCGAGTCGGAGAAGCCGTCCTGCCGTGGAGGTGGAGCATCGCAAGAGTTCCGCGGCGGCGCGGTGCACTGAGGCGCCGTTCCCTGCTAACCGCGAGTTGCTCGGCCGCCGCCGCCGCCGCTCCTCATGGCCTCTTCCTTGTGCTTTGTTTTTCTTTTTTTGAGAAGTGATACGAGTCCGT
More
|
||||||||||
| CDS seq | ATGGAAAAGAAGGTGGTAGAGCCTTCAGAGAAGAAGACATTTGTGGATTTGAAATCAATGTGGGGTAGAGCTGAAAAGAAACTAAAGCCTATAGTTGACAGCAATAATATTTCTGAGCATTCAGTTGTGAGGAAAGACACTGAACCTACTACACATGCACCTGCAACTGAGAAGATTGGGTGTAGTAGAGCATGTGAAGTTGGATTTGCAGAAACAGAAACTCATGTGCCCTATGAAAGTATAGAAGTATCAAGACCTCAAGATATAGATGGCAACATAGAAATATCCAAACCTCATGTTGCAATTTCAGAATCTAAAGAGGAAGATTGGCTAGAAGATGTTGATGAGGATGTTGGTTTTCTACCACATGATCCTGGAAAGAGGATTGCCATCTCAGATTATAGTGTGAATCAGCAAGATGCAGTGAGGATGAAGTATATTGCACTTGGGCCTTGTCGACCACCACTAGAGCAATTTCCTCAAAGAAATTGTGGAGGTAAACGTCGTTTCATAAGTAGCTGGTTTGATAAGTATAGTTGGCTTGAATATAGCGAGGAAAAGGATGTTGCATTCTGTTTTGTTTGCTACTTGTTCAAAGATAGAACTAATTATGTTGGTGGGGATAGTTATGTGAATGAGGGCTTTAGACAATGA
More
|
||||||||||
| Protein seq | MEKKVVEPSEKKTFVDLKSMWGRAEKKLKPIVDSNNISEHSVVRKDTEPTTHAPATEKIGCSRACEVGFAETETHVPYESIEVSRPQDIDGNIEISKPHVAISESKEEDWLEDVDEDVGFLPHDPGKRIAISDYSVNQQDAVRMKYIALGPCRPPLEQFPQRNCGGKRRFISSWFDKYSWLEYSEEKDVAFCFVCYLFKDRTNYVGGDSYVNEGFRQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g19150 | LOC_Os09g19150.1 | Chr09 | 11441886 | 11444551 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAAAAGAAGGTGGTAGAGCCTTCAGAGAAGAAGACATTTGTGGATTTGAAATCAATGTGGGGTAGAGCTGAAAAGAAACTAAAGCCTATAGTTGACAGCAATAATATTTCTGAGCATTCAGTTGTGAGGAAAGACACTGAACCTACTACACATGCACCTGCAACTGAGAAGATTGGGTGTAGTAGAGCATGTGAAGTTGGATTTGCAGAAACAGAAACTCATGTGCCCTATGAAAGTATAGAAGTATCAAGACCTCAAGATATAGATGGCAACATAGAAATATCCAAACCTCATGTTGCAATTTCAGAATCTAAAGAGGAAGATTGGCTAGAAGATGTTGATGAGGATGTTGGTTTTCTACCACATGATCCTGGAAAGAGGATTGCCATCTCAGATTATAGTGTGAATCAGCAAGATGCAGTGAGGATGAAGTATATTGCACTTGGGCCTTGTCGACCACCACTAGAGCAATTTCCTCAAAGAAATTGTGGAGGTAAACGTCGTTTCATAAGTAGCTGGTTTGATAAGTATAGTTGGCTTGAATATAGCGAGGAAAAGGATGTTGCATTCTGTTTTGTTTGCTACTTGTTCAAAGATAGAACTAATTATGTTGGTGGGGATAGTTATGTGAATGAGGGCTTTAGACAATGA
More
|
|||||||
| Protein seq | MEKKVVEPSEKKTFVDLKSMWGRAEKKLKPIVDSNNISEHSVVRKDTEPTTHAPATEKIGCSRACEVGFAETETHVPYESIEVSRPQDIDGNIEISKPHVAISESKEEDWLEDVDEDVGFLPHDPGKRIAISDYSVNQQDAVRMKYIALGPCRPPLEQFPQRNCGGKRRFISSWFDKYSWLEYSEEKDVAFCFVCYLFKDRTNYVGGDSYVNEGFRQ
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g19150 | LOC_Os09g19150.2 | Chr09 | 11441886 | 11444551 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAAAAGAAGGTGGTAGAGCCTTCAGAGAAGAAGACATTTGTGGATTTGAAATCAATGTGGGGTAGAGCTGAAAAGAAACTAAAGCCTATAGTTGACAGCAATAATATTTCTGAGCATTCAGTTGTGAGGAAAGACACTGAACCTACTACACATGCACCTGCAACTGAGAAGATTGGGTGTAGTAGAGCATGTGAAGTTGGATTTGCAGAAACAGAAACTCATGTGCCCTATGAAAGTATAGAAGTATCAAGACCTCAAGATATAGATGGCAACATAGAAATATCCAAACCTCATGTTGCAATTTCAGAATCTAAAGAGGAAGATTGGCTAGAAGATGTTGATGAGGATGTTGGTTTTCTACCACATGATCCTGGAAAGAGGATTGCCATCTCAGATTATAGTGTGAATCAGCAAGATGCAGTGAGGATGAAGTATATTGCACTTGGGCCTTGTCGACCACCACTAGAGCAATTTCCTCAAAGAAATTGTGGAGATGACTTAAACATAACTTTGCAAAGGAGGGAGCAAGATATTGTGAATGCGGTTGAGCTCATTATTTTGACAAAGATGCAATTGGAGATGTTGCGGCAAGACGATGGGTGGGAGAATTTTTAA
More
|
|||||||
| Protein seq | MEKKVVEPSEKKTFVDLKSMWGRAEKKLKPIVDSNNISEHSVVRKDTEPTTHAPATEKIGCSRACEVGFAETETHVPYESIEVSRPQDIDGNIEISKPHVAISESKEEDWLEDVDEDVGFLPHDPGKRIAISDYSVNQQDAVRMKYIALGPCRPPLEQFPQRNCGDDLNITLQRREQDIVNAVELIILTKMQLEMLRQDDGWENF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.910081 | 1.897100 | 0.219920 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0356100 | RBH | 2.850098 | 2.899484 | 0.861695 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0356100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0105400 | SBH | 0.008787 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
