Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g18440 | OGI:09034020 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:11304720-11306890 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTCAGCAAATAACTTTTCCTCCAGCTTTTGTAATGCCTTGTCTCGGCGAGCCTTCTGTTCTTCAGACATGTTACTTGTATCTTGAGTGAGCAGGGAATTGTATACCTCAAACATCTTTGCTTCTTTTTGCTGTTCTGCTGCCTTCAAATTTACGTTTGAAATGTGAATCTGTGCTTCAGTGACCTTCTCACGCTCCAGCTTCCGATCTTGCGTCACTTTGATAATTTTTTCAATATTGTCCCCTAGGATGACAATTCCTTCTGACATACTGTCCTTCTTGCGTTTTCCATTGCGCTCGGCTTGTGCTGCTTCTCTACCAATGGGACGCTTTTGTTCATCTGGAATATCAACCACTTCAGCCTTGTTTTTGTCCTTCTCAATCATTGCACACCACTTGGGCTCTTTTCTCAGTATCTTCCACCAATGCACAAGTGCAAAAGGCTTTCCAAATGTATTTGCATACATCTGTTGTGCCTCCTTCTCCAGCATGTCATCGTCATATCCGCTTGTATTCATTTGAGTTACCTTAGTCCAGTAATCATTGAATTCTCCAATCGATGATTTGAGGCGTGACCAATGAACCTTCAATTGATTTATTTCCCTTGTACGCTTCCCATTCCCTTTTCTGTTGAACTCATCAGTAACCTCTTTCCAAAACGTATCACCTTTCTTTTCATTCCCATGAATGGGATCTTTAGAAGCATTCAACCAAGCACTAGCCAATCTCTCTTCCTCATCATGAGTCCAATATCTCAAACTTCTCTTTTTAGCACTTGCATCATTGATTGCATCTTCATGAATATCAATTTGGACTGTATTGTTAGCTGCAGCTTGGGGTGTTGGTGGTGGAGTAGACATTGTGTTGGTAGTCTGACCAACAAGGTGAAAATTTTCACCTTCTTGTGGCTGCGGCAGACAGTTCTGTTGGAGAAAATTTACGAAGCCTTCTGTAGGATACAACCTGAAAACATAAGAAGCAAATCCAATTGAAACCGATGGCAGCATAAGAAAATCAAACATAGTAAGTTCCAGAAGATGATCCTGACATAGTAAGTACTGACATACTAACAGGTTACTTAAGCATCATACTGATGATCCTGACATAGTAGCAGTGCTGACATAGATTTTTTTTAATAAGATCCTGACATAGTTCAGTCAAGCAAGTACTACAGTATGTGTAAGGAATAATTCAGTCAAGCAACAAGTTCAGTCAAGCATATATGTCAAGTAACAAGTTTAGTCAAGCATACAGAAGACCATGTAGGGCAAGCTGTTGCTGTGGTTGCAAAGAAGACCATATATATCAGTACTAACAGGTTATTTGGTTAGCTATGACGACAGCACAGAGTGTAGGGCAAGCTGTTGCTGTGGTTGCAAAGAAGACCATGTCTGCATTCCATACAGAAGGCTAAAAATATATACCAATGTTAGGATGATACCCTTGGCATTTACACTCAAAGCATTTGTTACCAATGTACTGACAAGGAGATATTTAACAAGCTTTACGTATGTGAATTACATGTTGTACAGTACACTGTCCAGATTGCAAACTGAATCTTTTGCTTTCAATTTCTGTTATACAAGCCGCAATCCATACTGCATACTGAATACTGAATTTTCACTAACAAAGTATTACTGCAATCCATACTGAATACTACATTTTTTCTATTCATTACTCAGGCATATATCAAATTACCAATGTACTGACATACTGATTCTAACAAATTTCATTGAGCATAAACAGGAACTAATTACTAATGCATGAAGAAGAGAGTCATATCATGTATCATAGTGTACAGTGAATAATCTGTGACAAGGAGAAAATACCATGAACTTGGGCCTTGTTGGTTTCCTTGCAGAAAAGCAAAATTGGGGGGTACAGAGCCCCATCCTGCTCCTTGCGGTGGCCATGGGGGCATGGTTGACATCGGTACAGCAGGGGATGAACTGGGGGCAGCAACAGCAGGACTTGACGATGGAGTAGGCGGCTGAACTGTTGCCGGCGATGGAGCTTCAGGAGGGGAACTTGCAGGCAGCGGTGGCTGAGCTGTTGCCGGTGATGGAGCAGGCGCCGACGACCTCTTCAGGCCCAGCTGCTTGCCCCCACGCTTATTCCCTCCTCTGCCGGCGGCGCTCAGACGGGATCCACCACCTCCTTGTGGATCCAT
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| CDS seq | ATGGATCCACAAGGAGGTGGTGGATCCCGTCTGAGCGCCGCCGGCAGAGGAGGGAATAAGCGTGGGGGCAAGCAGCTGGGCCTGAAGAGGTCGTCGGCGCCTGCTCCATCACCGGCAACAGCTCAGCCACCGCTGCCTGCAAGTTCCCCTCCTGAAGCTCCATCGCCGGCAACAGTTCAGCCGCCTACTCCATCGTCAAGTCCTGCTGTTGCTGCCCCCAGTTCATCCCCTGCTGTACCGATGTCAACCATGCCCCCATGGCCACCGCAAGGAGCAGGATGGGGCTCTGTACCCCCCAATTTTGCTTTTCTGCAAGGAAACCAACAAGGCCCAAGTTCATGGTTGTATCCTACAGAAGGCTTCGTAAATTTTCTCCAACAGAACTGTCTGCCGCAGCCACAAGAAGGTGAAAATTTTCACCTTGTTGGTCAGACTACCAACACAATGTCTACTCCACCACCAACACCCCAAGCTGCAGCTAACAATACAGTCCAAATTGATATTCATGAAGATGCAATCAATGATGCAAGTGCTAAAAAGAGAAGTTTGAGATATTGGACTCATGATGAGGAAGAGAGATTGGCTAGTGCTTGGTTGAATGCTTCTAAAGATCCCATTCATGGGAATGAAAAGAAAGGTGATACGTTTTGGAAAGAGGTTACTGATGAGTTCAACAGAAAAGGGAATGGGAAGCGTACAAGGGAAATAAATCAATTGAAGGTTCATTGGTCACGCCTCAAATCATCGATTGGAGAATTCAATGATTACTGGACTAAGGTAACTCAAATGAATACAAGCGGATATGACGATGACATGCTGGAGAAGGAGGCACAACAGATGTATGCAAATACATTTGGAAAGCCTTTTGCACTTGTGCATTGGTGGAAGATACTGAGAAAAGAGCCCAAGTGGTGTGCAATGATTGAGAAGGACAAAAACAAGGCTGAAGTGGTTGATATTCCAGATGAACAAAAGCGTCCCATTGGTAGAGAAGCAGCACAAGCCGAGCGCAATGGAAAACGCAAGAAGGACAGTATGTCAGAAGGAATTGTCATCCTAGGGGACAATATTGAAAAAATTATCAAAGTGACGCAAGATCGGAAGCTGGAGCGTGAGAAGGTCACTGAAGCACAGATTCACATTTCAAACGTAAATTTGAAGGCAGCAGAACAGCAAAAAGAAGCAAAGATGTTTGAGGTATACAATTCCCTGCTCACTCAAGATACAAGTAACATGTCTGAAGAACAGAAGGCTCGCCGAGACAAGGCATTACAAAAGCTGGAGGAAAAGTTATTTGCTGACTAA
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| Protein seq | MDPQGGGGSRLSAAGRGGNKRGGKQLGLKRSSAPAPSPATAQPPLPASSPPEAPSPATVQPPTPSSSPAVAAPSSSPAVPMSTMPPWPPQGAGWGSVPPNFAFLQGNQQGPSSWLYPTEGFVNFLQQNCLPQPQEGENFHLVGQTTNTMSTPPPTPQAAANNTVQIDIHEDAINDASAKKRSLRYWTHDEEERLASAWLNASKDPIHGNEKKGDTFWKEVTDEFNRKGNGKRTREINQLKVHWSRLKSSIGEFNDYWTKVTQMNTSGYDDDMLEKEAQQMYANTFGKPFALVHWWKILRKEPKWCAMIEKDKNKAEVVDIPDEQKRPIGREAAQAERNGKRKKDSMSEGIVILGDNIEKIIKVTQDRKLEREKVTEAQIHISNVNLKAAEQQKEAKMFEVYNSLLTQDTSNMSEEQKARRDKALQKLEEKLFAD |
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| Function | Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g18440 | LOC_Os09g18440.1 | Chr09 | 11304720 | 11306890 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATCCACAAGGAGGTGGTGGATCCCGTCTGAGCGCCGCCGGCAGAGGAGGGAATAAGCGTGGGGGCAAGCAGCTGGGCCTGAAGAGGTCGTCGGCGCCTGCTCCATCACCGGCAACAGCTCAGCCACCGCTGCCTGCAAGTTCCCCTCCTGAAGCTCCATCGCCGGCAACAGTTCAGCCGCCTACTCCATCGTCAAGTCCTGCTGTTGCTGCCCCCAGTTCATCCCCTGCTGTACCGATGTCAACCATGCCCCCATGGCCACCGCAAGGAGCAGGATGGGGCTCTGTACCCCCCAATTTTGCTTTTCTGCAAGGAAACCAACAAGGCCCAAGTTCATGGTTGTATCCTACAGAAGGCTTCGTAAATTTTCTCCAACAGAACTGTCTGCCGCAGCCACAAGAAGGTGAAAATTTTCACCTTGTTGGTCAGACTACCAACACAATGTCTACTCCACCACCAACACCCCAAGCTGCAGCTAACAATACAGTCCAAATTGATATTCATGAAGATGCAATCAATGATGCAAGTGCTAAAAAGAGAAGTTTGAGATATTGGACTCATGATGAGGAAGAGAGATTGGCTAGTGCTTGGTTGAATGCTTCTAAAGATCCCATTCATGGGAATGAAAAGAAAGGTGATACGTTTTGGAAAGAGGTTACTGATGAGTTCAACAGAAAAGGGAATGGGAAGCGTACAAGGGAAATAAATCAATTGAAGGTTCATTGGTCACGCCTCAAATCATCGATTGGAGAATTCAATGATTACTGGACTAAGGTAACTCAAATGAATACAAGCGGATATGACGATGACATGCTGGAGAAGGAGGCACAACAGATGTATGCAAATACATTTGGAAAGCCTTTTGCACTTGTGCATTGGTGGAAGATACTGAGAAAAGAGCCCAAGTGGTGTGCAATGATTGAGAAGGACAAAAACAAGGCTGAAGTGGTTGATATTCCAGATGAACAAAAGCGTCCCATTGGTAGAGAAGCAGCACAAGCCGAGCGCAATGGAAAACGCAAGAAGGACAGTATGTCAGAAGGAATTGTCATCCTAGGGGACAATATTGAAAAAATTATCAAAGTGACGCAAGATCGGAAGCTGGAGCGTGAGAAGGTCACTGAAGCACAGATTCACATTTCAAACGTAAATTTGAAGGCAGCAGAACAGCAAAAAGAAGCAAAGATGTTTGAGGTATACAATTCCCTGCTCACTCAAGATACAAGTAACATGTCTGAAGAACAGAAGGCTCGCCGAGACAAGGCATTACAAAAGCTGGAGGAAAAGTTATTTGCTGACTAA
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| Protein seq | MDPQGGGGSRLSAAGRGGNKRGGKQLGLKRSSAPAPSPATAQPPLPASSPPEAPSPATVQPPTPSSSPAVAAPSSSPAVPMSTMPPWPPQGAGWGSVPPNFAFLQGNQQGPSSWLYPTEGFVNFLQQNCLPQPQEGENFHLVGQTTNTMSTPPPTPQAAANNTVQIDIHEDAINDASAKKRSLRYWTHDEEERLASAWLNASKDPIHGNEKKGDTFWKEVTDEFNRKGNGKRTREINQLKVHWSRLKSSIGEFNDYWTKVTQMNTSGYDDDMLEKEAQQMYANTFGKPFALVHWWKILRKEPKWCAMIEKDKNKAEVVDIPDEQKRPIGREAAQAERNGKRKKDSMSEGIVILGDNIEKIIKVTQDRKLEREKVTEAQIHISNVNLKAAEQQKEAKMFEVYNSLLTQDTSNMSEEQKARRDKALQKLEEKLFAD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0303800 | SBH | 0.095997 | 0.279061 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g21516 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0303800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005320 | SBH | 0.102982 | 0.950432 | 1.562481 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005360 | SBH | 0.000000 | 0.317273 | 0.576999 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005530 | SBH | 0.0 | 0.0 | 3.635149 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005100 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0106400 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0137700 | SBH | 1.09664 | 2.2545425 | 11.420856 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005520 | SBH | 0.075095 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005420 | SBH | 0.132270 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005380 | SBH | 0.851316 | 4.578854 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005270 | SBH | 0.060929 | 0.0 | 0.333879 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005360 | SBH | 0.066069 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005590 | SBH | 0.087736 | 0.866308 | 0.478480 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004890 | RBH | 0.0 | 0.0 | 0.0 |
