Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g14560 | OGI:09026210 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:8623667-8626180 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAACTGAAAATCCGAAATCCATCCATGTCCAAGTCGATGTCGTTCGCCGGAACAAGGATGATGGCCGCGGCGGCCCGGCGCGCCGTCCACTCCCAGCCTCCGTCCGGCCCCCTCACCGACATCGCGGAAGAATCGCAGGTTGAGATCGTCTGTTTGTTTGGTTGGTTTTGGGGATCGATCGATCTTTGGTTGCTGCTCATCAGTTGATTAATTGAATTGATCGCTAGGTGATCAGCTCCCTTTATGAGGTGGCAAAGGCGAAGAATCTTTCCCGGGTGCCACGGCAGTTGGATCCTTCGACGCGGGTGCACATCGCTCTAGATATCGAGCACAAAATCAGCATGATCAGGATCGGTGCTAGTCCTTCCGAACCGCAAGGATTTATTTATTTCTTAAAATATACTAATACTCTCTCTATTCCTAAATATTTAACGCCGTCGACTTTTAGTTTACTAGCACCCTGCCCGAGATTTTATTGAGGAAAAGGGGATGGCGTCAACGAAATTTCTTGACATGGGTTAAGATAAACATCAATCTTCCGTGCGATATTATGGAGGAAGTTACTAATCTGACCCAAAAGAAATAATAATACTCCCTCCGTCCCAAAGAATAAATCCTAGAAACGGATGAGATATTTATTTGTACTACGAATCTGTACTGAGAAATATCTTATTTGATTATAGGTTCTTATATTTTAGGACGGATGGAGTAATAAAAATAAGCTTTAATGACTCACTCACCGAAGCAACAGGTTCAAATGATCGACAGCATAGATGAAACCCATTTGTGATTGATTCCAAAATAGAAACCTGAATAATAGATAAACTGATCAGTCATTAGCATAATCTACTGTACTATTCTACCTTGAATTATGGCGCTGGTCAAGGACCGCTATATAGGTGTATGCTAGTACTGATCGCTGACATTTACAAACTAAGTAAAATGATCAAACTCCTTTCTGAACCTAAGCCAGCAAAACAGACAACGTTGATCATTTTCTGTTGAATAGCGTCCTCAACAAGCGGTGCATTTTCGGTCGAGCATCTTGAGAGAACGCAACACAAGAGAGAGCGATGTTTCAGGACCGACAAAATCTGCTGTGGATAGCAACTGAATTTCTGGAGACCGAACGACTGCCCCATCTGATCAGGGGCTGCCTGAAAGACCAAGAGCCTGCTTGCCTAACATCGTGGCCGTGGGCCAAGCAGTTTTCTCTCATAGATAAGAATATCCTGCTCTTAGCACCGGTTTTCACTTCGTGTAGCAGATGCCATCACTGACCGATGGTTTCCCAGTCAAAAGTTCCAGCAAGTTGTCTCCAAAACTATAAATACTGGCAGCCATCGCCAACCTCATTGTGTATGCATATTCTGCAATCATAATTCAACAGAATTTAGTTTCAGTACATATCTGATATCCCATAGATTTCGGCAAGTGTTATCCGCTAGATGACGGGAGGGGGATGGGGGAAGAAGAAGGGCGGGAGAGGCGCTGGGAGGGGGAGGGGATTAGGTGACTGGTGCGCGGGTAGGGGTGGCGCTGGCAGCAGAGGACGTGATGTCATGATAGGAATCGGATGCGGATGAAGCTTAGAGAAACGACGGACGGAAAATCTGTGGCAATTGGAAAAATACGAATTTTTTTAAGTATATATAGGTTAGATATGCATAATAAAAATGATGATACGTATGATGAACTAAAAATTGATCTTGGTTTGCGTTGCAGATCACTCCGTGGGGACATTTGGTTTGACAACTGTTGGGCAAACAATCTTTCTTTAGTTTGTCTTTTATCCACATTGTTTGGGGTGTGTGAGGCTCGAGCCAAGGAGAATCAACAGTCTGACCATATGTCCTCCTCGTCACCACCCTCGTAATAAATTATTATGTGTAAAATCATGAGTTCAAATGGATTTTATTAGATTATAGTATAATATGTACGTCTTGTTATCTTCATTATGATTTTACCTCTTGTGGTATTTATGTACTCCCTCCTTTTCACAATGTAAGTCATTCTAGCATTTTTCACATTCATATTGATGTTAATGAATCTAGACAGATATATCTAGATTCATTAACATCAATATGAATATAGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTATTATTAGTACCAACCTCCTTAATTTAAACCTTGTGTGTTCTTAATGCATTACTACCTCCTTAAATTTAAGCCTTGTGGTCTTTATTATTAGTACCTCAGTAATTTAAGCCTTGTGGTCTTGATGTACTAACCTCCTTAATTTAAAAGCCTTGTTGTCTTGATCCATTAGTACCTCCTTACTTTAATTTGTAGGCAGTGTCACAACTTAAGAGTTAAGAGTAACTTTAAGTGGTACAACTATATGTTTGTCTCGAACTTTTTTATTTGTGCATGACTCCATGCACCCAAATACAACTTGCTCACTTACTTTCATGATGCCTTGTGGTGAACTGTTTGCTATGTTGTTAAGATTGCTGAAATATTTGTGGTTAAGACGCAT
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| CDS seq | ATGCGTCTTAACCACAAATATTTCAGCAATCTTAACAACATAGCAAACAGTTCACCACAAGGCATCATGAAAATATATCTGTCTAGATTCATTAACATCAATATGAATGTGAAAAATGCTAGAATGACTTACATTGTGAAAAGGAGGGAGTACATAAATACCACAAGAGAATATGCATACACAATGAGGTTGGCGATGGCTGCCAGTATTTATAGTTTTGGAGACAACTTGCTGGAACTTTTGACTGGGAAACCATCGGTTTCTATTTTGGAATCAATCACAAATGGGTTTCATCTATGCTGTCGATCATTTGAACCTGTTGCTTCGAGCGATGTGCACCCGCGTCGAAGGATCCAACTGCCGTGGCACCCGGGAAAGATTCTTCGCCTTTGCCACCTCATAAAGGGAGCTGATCACCTAGCGATCAATTCAATTAATCAACTGATGAGCAGCAACCAAAGATCGATCGATCCCCAAAACCAACCAAACAAACAGACGATCTCAACCTGCGATTCTTCCGCGATGTCGGTGAGGGGGCCGGACGGAGGCTGGGAGTGGACGGCGCGCCGGGCCGCCGCGGCCATCATCCTTGTTCCGGCGAACGACATCGACTTGGACATGGATGGATTTCGGATTTTCAGTTAG
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| Protein seq | MRLNHKYFSNLNNIANSSPQGIMKIYLSRFININMNVKNARMTYIVKRREYINTTREYAYTMRLAMAASIYSFGDNLLELLTGKPSVSILESITNGFHLCCRSFEPVASSDVHPRRRIQLPWHPGKILRLCHLIKGADHLAINSINQLMSSNQRSIDPQNQPNKQTISTCDSSAMSVRGPDGGWEWTARRAAAAIILVPANDIDLDMDGFRIFS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g14560 | LOC_Os09g14560.1 | Chr09 | 8623667 | 8626180 | - | MSU_osa1r7 | ||
| CDS seq | ATGCGTCTTAACCACAAATATTTCAGCAATCTTAACAACATAGCAAACAGTTCACCACAAGGCATCATGAAAATATATCTGTCTAGATTCATTAACATCAATATGAATGTGAAAAATGCTAGAATGACTTACATTGTGAAAAGGAGGGAGTACATAAATACCACAAGAGAATATGCATACACAATGAGGTTGGCGATGGCTGCCAGTATTTATAGTTTTGGAGACAACTTGCTGGAACTTTTGACTGGGAAACCATCGGTTTCTATTTTGGAATCAATCACAAATGGGTTTCATCTATGCTGTCGATCATTTGAACCTGTTGCTTCGAGCGATGTGCACCCGCGTCGAAGGATCCAACTGCCGTGGCACCCGGGAAAGATTCTTCGCCTTTGCCACCTCATAAAGGGAGCTGATCACCTAGCGATCAATTCAATTAATCAACTGATGAGCAGCAACCAAAGATCGATCGATCCCCAAAACCAACCAAACAAACAGACGATCTCAACCTGCGATTCTTCCGCGATGTCGGTGAGGGGGCCGGACGGAGGCTGGGAGTGGACGGCGCGCCGGGCCGCCGCGGCCATCATCCTTGTTCCGGCGAACGACATCGACTTGGACATGGATGGATTTCGGATTTTCAGTTAG
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| Protein seq | MRLNHKYFSNLNNIANSSPQGIMKIYLSRFININMNVKNARMTYIVKRREYINTTREYAYTMRLAMAASIYSFGDNLLELLTGKPSVSILESITNGFHLCCRSFEPVASSDVHPRRRIQLPWHPGKILRLCHLIKGADHLAINSINQLMSSNQRSIDPQNQPNKQTISTCDSSAMSVRGPDGGWEWTARRAAAAIILVPANDIDLDMDGFRIFS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g38689 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024610 | SBH | 0.0 | 0.0 | 0.935758 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024410 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005410 | RBH | 0.0 | 0.0 | 1.919928 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0370600 | SBH | 0 | 0.031554 | 0.0818835 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005570 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0024280 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024320 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0024390 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024160 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024060 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024120 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005350 | RBH | 0.0 | 0.0 | 0.0 |
