Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os09g04000 OGI:09002790 | 3/16 Nipponbare | IRGSP 1.0 | MSU Chr09:2051816-2054910
Gene Symbol ML2, OsML2
DNA seq

TTACATCACCACAGTTGCATAATAAGTGTTCATCATTGCCTAAACATAGAAGTTCAACATTGTTCATCATTTTAGTTTAAGCCTAAACATTCCTTTGGGGTTAATTATTTCGCGGAGGATGAAGCTGGCTATCTCCTCACGAACCTCCTCAAAGCTGGTAGTCAGAGACTTGGTTATTGTGCCCTACATTGTCATAATTCCAGATTAGTTGATCGATCATATATAAGTACTAAAATGTAGTTAGTCTATCACAATTGAGACCACCGACCTCAAACTCAGCCAAAGTCTTCACCTTTTCTCTATACAGAAGTCGCATGTTGTGGCACACATGGAATCCGCACTGGTCACCTATTTGTTGCTTCACCGAGAAGTCTTTTTTGTGGATGAGGGTGTCATGTCCTGTCTTCTTGAGGCCTCCTCTTTGCACGTATTAGGCCCACGCTTCATCTATCGCTAGTTGAATTGGGGTCCAATCATATGCGTTCTTATCAATTCTAGAGTTCAGGTAATGACATGTACTCCATTTAGGTGTTATGACCAGAAGGATCCAATGGGCACTGCGGCATTAATATAGTGAAAGTTAATTAAGTACTCAAGGAATGTGTCATGCTGTTGTGTATATTTAGTTAACACTCTTACTATTTATTATAGGCACACATAATGTACTCCTTGTCTCGGCGGGACCACAAGGTGTCGTAGATGTAGTTGACCATTCCTTGACGGTCATTCTGGAGATTTGTGACAGTGACCACTTGTGGATGAAGGAAGGCAACTTCCGGTGCATGCTTCTGACACCATTGCCAACTTAACCTACACATAGGATCAACGATCTTGTAAGGAAGTTAAACCGATTGTTATTACCAGAATGAGTTGGGCGACAATACTTACAAGGAGTAGCACTTAAGGAGGCTTGTGTCCACCGCTCGGAGCTTGTAGAGGTCGAAAAGATCCTTGAAGTCGACCACGATATAATTTGTTGGACCAAGGAATGGCTTTCCATCGTGCTGTCCAAGGATATCGGTAGCTTTACTTGGCTTCCTGGCGTTAGATTTCTCCATGTAGTATAAGTGAAGGTCCTTGCAAGCGGTGCCCATTGCGGCAAGCACGTCATCTCCAACCAATGGCATGCCTAGTTGGAACTCCTGTGGAGCGACGTATTTCTTCTTGACCTCTTTGCCCTTAGTCTCTTCCTGGCCCTTGCCCAGATCTAGCTTTCTTGGAGCTAGAAGCGAGGTCTGCACCTTTCCTCCCCTTCCTCTCCCCTTTGCTTCGGGTTTATCGAGAGTAATTCTCTGAGGGGAAGAGTGTGCCTTCCTGCTCTTCTTCATCGGTGGGGGTTCATGAATCGCCTTGCTGTCGGCCTCCGTTCGGTCCTCCCCAAAATCCGTGTCGTACTGCAACTGCACATCGTAAGATTGTGCATGACGATCTTGAGCAGGAGGGGCTGAAGGAGCAGAGGCGGGTCTCTTTGGTGGACGACTGCCTGGTGCAGTGGTTGGCCTCGCTGTAACCCTGATCTCAATGAGGTCCTTGGGCCATTGGATGAAGGTACCACGGGCATTTCCTAGTGAGAGGACCTCGTCGTTCGGTGGATACTTCAGAGGGAACAGCTCGTATTCGGGCTTCACCGAGTCGACTTGAACTTTTGCACAGCCGGCCCTGAGTTGCGCTCCATGCACTCTTGTCTCTAGGGTCGGCTTGTACGCAAGTCCCTCGGCTGCTGGAACAGTGAAGGTCGGCATCACCCTAACTGTGAGGGTGCAGCTCGTTGGTTCCTGCGATAGATTAATCAATTTTTTTAGAATATTATATATCATATGGATTCGTTACGTCTTTCATGTATTGAGTAAGTTCACGGTTACCGTTATGTGGTCGACGGCGCTGTCGACCGATGTTGGATTTTCCGCCAACTCAGTTGATGCGCAACTGCTGCGTTTTTCGGTGGGACTTCCTAACTCTTTGTGCGCAGCAGCAGCGGCAGCCTGGGGGATCTGTTGCTCTTTTCGGATCTCTTGCCTAATCTTGGCCCTCATCGACTCGAGCTTTTCGTCGAATCCAGATGTCAGCTCAGCTCGTATCGACTCCCGGATCTTGGCTACAAGGCGTGCATCTTTCTCCGCCTTGTTGGAAGTCCGCTTCTTGTACTGCCACGCGTAGTCTGGAAATCCATACTTCCAGGGAACAGAAGACCCAACGCCCCGTGTCCGTCCACGGTGTTCCTTGTTGCCCAACGCTTTCGTGAGGAGGTCGTCCTCGCGTCTTTGAGAGCAGGCCTCTTGCAAGGCTTGTTGCTCGGCAACCAACTCCTTCTGCATTACAATTTAGTGGGGTCAAATAAACTGCACGATGGGAAACAATGCGAACATCTAGTTTGATTAGACACTTACTATAGCTTCGTATACTTGTTGATCTTCTGCATTTGGCATGAAGATTGTGCCATCATCATGTTTCTGGTACCTAGCCCTGGCCCAGTTCCTAGCCCGAGGGTGTGGGATATCGCCAAACATGAGCGGTGTGCACGATTCCTCCGCTTCTTCATCCTCACGCTGCCATTCCTCTTCCTTACCGGCATATCCGGCGGTACCAAGCCGGTGCGGATGCTGGTTCCTGGTCTGGAGCAAGCGATATGCCTCACTTCTAGCTCTGGACTCGGGGGTCGACTTCTTCGCATGGAATTCCGACTAGACCTGTTCCGTGATCCAAGGAAATTTCTCTCTTGGATCTGGATTTGCCGGGTTGTAGACGAACTCGCCGACTAGCTTAGTCTTGAAGTTCTTCCAAGCAGTGCCCATAACCTTGAAAGCAGCCCACCTGAGACGGTCCTCATGCTCCGCAGGATAATCAAAGCTCTCCTTGAACGTTAGCCAAGCAATGTCCTTCTCTGCGGCCGGCACGAGCTTGAAGTCGTCTTGCAGAATACTGAATTTCTGCCTCCCTATGACCCCACAGATAGACCTAAATCGGCTCAATATTTTCCTTGGAGATGTCCGCAACCCTACGGCGTCCACCGCTGTTATGCGGAACCGTTCCTTAGGAATTTTGTTCCCTGTCCTAGGAGTACGTGCCCTTGAGGACCCACTAGTTGTCGTCGACAT

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CDS seq

ATGTCGACGACAACTAGTGGGTCCTCAAGGGCACGTACTCCTAGGACAGGGAACAAAATTCCTAAGGAACGGTTCCGCATAACAGCGGTGGACGCCGTAGGGTTGCGGACATCTCCAAGGAAAATATTGAGCCGATTTAGGTCTATCTGTGGGGTCATAGGGAGGCAGAAATTCAGTATTCTGCAAGACGACTTCAAGCTCGTGCCGGCCGCAGAGAAGGACATTGCTTGGCTAACGTTCAAGGAGAGCTTTGATTATCCTGCGGAGCATGAGGACCGTCTCAGGTGGGCTGCTTTCAAGGTTATGGGCACTGCTTGGAAGAACTTCAAGACTAAGCTAGTCGGCGAGTTCGTCTACAACCCGGCAAATCCAGATCCAAGAGAGAAATTTCCTTGGATCACGGAACAGACCAGGAACCAGCATCCGCACCGGCTTGGTACCGCCGGATATGCCGGTAAGGAAGAGGAATGGCAGCGTGAGGATGAAGAAGCGGAGGAATCGTGCACACCGCTCATGTTTGGCGATATCCCACACCCTCGGGCTAGGAACTGGGCCAGGGCTAGGTACCAGAAACATGATGATGGCACAATCTTCATGCCAAATGCAGAAGATCAACAAGTATACGAAGCTATAAAGGAGTTGGTTGCCGAGCAACAAGCCTTGCAAGAGGCCTGCTCTCAAAGACGCGAGGACGACCTCCTCACGAAAGCGTTGGGCAACAAGGAACACCGTGGACGGACACGGGGCGTTGGGTCTTCTGTTCCCTGGAAGTATGGATTTCCAGACTACGCGTGGCAGTACAAGAAGCGGACTTCCAACAAGGCGGAGAAAGATGCACGCCTTGTAGCCAAGATCCGGGAGTCGATACGAGCTGAGCTGACATCTGGATTCGACGAAAAGCTCGAGTCGATGAGGGCCAAGATTAGGCAAGAGATCCGAAAAGAGCAACAGATCCCCCAGGCTGCCGCTGCTGCTGCGCACAAAGAGTTAGGAAGTCCCACCGAAAAACGCAGCAGTTGCGCATCAACTGAGTTGGCGGAAAATCCAACATCGGTCGACAGCGCCGTCGACCACATAACGGAACCAACGAGCTGCACCCTCACAGTTAGGGTGATGCCGACCTTCACTGTTCCAGCAGCCGAGGGACTTGCGTACAAGCCGACCCTAGAGACAAGAGTGCATGGAGCGCAACTCAGGGCCGGCTGTGCAAAAGTTCAAGTCGACTCGGTGAAGCCCGAATACGAGCTGTTCCCTCTGAAGTATCCACCGAACGACGAGGTCCTCTCACTAGGAAATGCCCGTGGTACCTTCATCCAATGGCCCAAGGACCTCATTGAGATCAGGGTTACAGCGAGGCCAACCACTGCACCAGGCAGTCGTCCACCAAAGAGACCCGCCTCTGCTCCTTCAGCCCCTCCTGCTCAAGATCGTCATGCACAATCTTACGATGTGCAGTTGCAGTACGACACGGATTTTGGGGAGGACCGAACGGAGGCCGACAGCAAGGCGATTCATGAACCCCCACCGATGAAGAAGAGCAGGAAGGCACACTCTTCCCCTCAGAGAATTACTCTCGATAAACCCGAAGCAAAGGGGAGAGGAAGGGGAGGAAAGGTGCAGACCTCGCTTCTAGCTCCAAGAAAGCTAGATCTGGGCAAGGGCCAGGAAGAGACTAAGGGCAAAGAGGTCAAGAAGAAATACGTCGCTCCACAGGAGTTCCAACTAGGCATGCCATTGGTTGGAGATGACGTGCTTGCCGCAATGGGCACCGCTTGCAAGGACCTTCACTTATACTACATGGAGAAATCTAACGCCAGGAAGCCAAGTAAAGCTACCGATATCCTTGGACAGCACGATGGAAAGCCATTCCTTGGTCCAACAAATTATATCGTGGTCGACTTCAAGGATCTTTTCGACCTCTACAAGCTCCGAGCGGTGGACACAAGCCTCCTTAAGTGCTACTCCTTGTTAAGTTGGCAATGGTGTCAGAAGCATGCACCGGAAGTTGCCTTCCTTCATCCACAAGTGGTCACTGTCACAAATCTCCAGAATGACCGTCAAGGAATGGTCAACTACATCTACGACACCTTGTGGTCCCGCCGAGACAAGGAGTACATTATAGGAGGCCTCAAGAAGACAGGACATGACACCCTCATCCACAAAAAAGACTTCTCGGTGAAGCAACAAATAGGTGACCAGTGCGGATTCCATGTGTGCCACAACATGCGACTTCTGTATAGAGAAAAGGTGAAGACTTTGGCTGAGTTTGAGGGCACAATAACCAAGTCTCTGACTACCAGCTTTGAGGAGGCAATGATGAACACTTATTATGCAACTGTGGTGATGTAA

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Protein seq

MSTTTSGSSRARTPRTGNKIPKERFRITAVDAVGLRTSPRKILSRFRSICGVIGRQKFSILQDDFKLVPAAEKDIAWLTFKESFDYPAEHEDRLRWAAFKVMGTAWKNFKTKLVGEFVYNPANPDPREKFPWITEQTRNQHPHRLGTAGYAGKEEEWQREDEEAEESCTPLMFGDIPHPRARNWARARYQKHDDGTIFMPNAEDQQVYEAIKELVAEQQALQEACSQRREDDLLTKALGNKEHRGRTRGVGSSVPWKYGFPDYAWQYKKRTSNKAEKDARLVAKIRESIRAELTSGFDEKLESMRAKIRQEIRKEQQIPQAAAAAAHKELGSPTEKRSSCASTELAENPTSVDSAVDHITEPTSCTLTVRVMPTFTVPAAEGLAYKPTLETRVHGAQLRAGCAKVQVDSVKPEYELFPLKYPPNDEVLSLGNARGTFIQWPKDLIEIRVTARPTTAPGSRPPKRPASAPSAPPAQDRHAQSYDVQLQYDTDFGEDRTEADSKAIHEPPPMKKSRKAHSSPQRITLDKPEAKGRGRGGKVQTSLLAPRKLDLGKGQEETKGKEVKKKYVAPQEFQLGMPLVGDDVLAAMGTACKDLHLYYMEKSNARKPSKATDILGQHDGKPFLGPTNYIVVDFKDLFDLYKLRAVDTSLLKCYSLLSWQWCQKHAPEVAFLHPQVVTVTNLQNDRQGMVNYIYDTLWSRRDKEYIIGGLKKTGHDTLIHKKDFSVKQQIGDQCGFHVCHNMRLLYREKVKTLAEFEGTITKSLTTSFEEAMMNTYYATVVM

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os09g04000 LOC_Os09g04000.1 Chr09 2051816 2054910 - MSU_osa1r7
CDS seq

ATGTCGACGACAACTAGTGGGTCCTCAAGGGCACGTACTCCTAGGACAGGGAACAAAATTCCTAAGGAACGGTTCCGCATAACAGCGGTGGACGCCGTAGGGTTGCGGACATCTCCAAGGAAAATATTGAGCCGATTTAGGTCTATCTGTGGGGTCATAGGGAGGCAGAAATTCAGTATTCTGCAAGACGACTTCAAGCTCGTGCCGGCCGCAGAGAAGGACATTGCTTGGCTAACGTTCAAGGAGAGCTTTGATTATCCTGCGGAGCATGAGGACCGTCTCAGGTGGGCTGCTTTCAAGGTTATGGGCACTGCTTGGAAGAACTTCAAGACTAAGCTAGTCGGCGAGTTCGTCTACAACCCGGCAAATCCAGATCCAAGAGAGAAATTTCCTTGGATCACGGAACAGACCAGGAACCAGCATCCGCACCGGCTTGGTACCGCCGGATATGCCGGTAAGGAAGAGGAATGGCAGCGTGAGGATGAAGAAGCGGAGGAATCGTGCACACCGCTCATGTTTGGCGATATCCCACACCCTCGGGCTAGGAACTGGGCCAGGGCTAGGTACCAGAAACATGATGATGGCACAATCTTCATGCCAAATGCAGAAGATCAACAAGTATACGAAGCTATAAAGGAGTTGGTTGCCGAGCAACAAGCCTTGCAAGAGGCCTGCTCTCAAAGACGCGAGGACGACCTCCTCACGAAAGCGTTGGGCAACAAGGAACACCGTGGACGGACACGGGGCGTTGGGTCTTCTGTTCCCTGGAAGTATGGATTTCCAGACTACGCGTGGCAGTACAAGAAGCGGACTTCCAACAAGGCGGAGAAAGATGCACGCCTTGTAGCCAAGATCCGGGAGTCGATACGAGCTGAGCTGACATCTGGATTCGACGAAAAGCTCGAGTCGATGAGGGCCAAGATTAGGCAAGAGATCCGAAAAGAGCAACAGATCCCCCAGGCTGCCGCTGCTGCTGCGCACAAAGAGTTAGGAAGTCCCACCGAAAAACGCAGCAGTTGCGCATCAACTGAGTTGGCGGAAAATCCAACATCGGTCGACAGCGCCGTCGACCACATAACGGAACCAACGAGCTGCACCCTCACAGTTAGGGTGATGCCGACCTTCACTGTTCCAGCAGCCGAGGGACTTGCGTACAAGCCGACCCTAGAGACAAGAGTGCATGGAGCGCAACTCAGGGCCGGCTGTGCAAAAGTTCAAGTCGACTCGGTGAAGCCCGAATACGAGCTGTTCCCTCTGAAGTATCCACCGAACGACGAGGTCCTCTCACTAGGAAATGCCCGTGGTACCTTCATCCAATGGCCCAAGGACCTCATTGAGATCAGGGTTACAGCGAGGCCAACCACTGCACCAGGCAGTCGTCCACCAAAGAGACCCGCCTCTGCTCCTTCAGCCCCTCCTGCTCAAGATCGTCATGCACAATCTTACGATGTGCAGTTGCAGTACGACACGGATTTTGGGGAGGACCGAACGGAGGCCGACAGCAAGGCGATTCATGAACCCCCACCGATGAAGAAGAGCAGGAAGGCACACTCTTCCCCTCAGAGAATTACTCTCGATAAACCCGAAGCAAAGGGGAGAGGAAGGGGAGGAAAGGTGCAGACCTCGCTTCTAGCTCCAAGAAAGCTAGATCTGGGCAAGGGCCAGGAAGAGACTAAGGGCAAAGAGGTCAAGAAGAAATACGTCGCTCCACAGGAGTTCCAACTAGGCATGCCATTGGTTGGAGATGACGTGCTTGCCGCAATGGGCACCGCTTGCAAGGACCTTCACTTATACTACATGGAGAAATCTAACGCCAGGAAGCCAAGTAAAGCTACCGATATCCTTGGACAGCACGATGGAAAGCCATTCCTTGGTCCAACAAATTATATCGTGGTCGACTTCAAGGATCTTTTCGACCTCTACAAGCTCCGAGCGGTGGACACAAGCCTCCTTAAGTGCTACTCCTTGTTAAGTTGGCAATGGTGTCAGAAGCATGCACCGGAAGTTGCCTTCCTTCATCCACAAGTGGTCACTGTCACAAATCTCCAGAATGACCGTCAAGGAATGGTCAACTACATCTACGACACCTTGTGGTCCCGCCGAGACAAGGAGTACATTATAGGAGGCCTCAAGAAGACAGGACATGACACCCTCATCCACAAAAAAGACTTCTCGGTGAAGCAACAAATAGGTGACCAGTGCGGATTCCATGTGTGCCACAACATGCGACTTCTGTATAGAGAAAAGGTGAAGACTTTGGCTGAGTTTGAGGGCACAATAACCAAGTCTCTGACTACCAGCTTTGAGGAGGCAATGATGAACACTTATTATGCAACTGTGGTGATGTAA

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Protein seq

MSTTTSGSSRARTPRTGNKIPKERFRITAVDAVGLRTSPRKILSRFRSICGVIGRQKFSILQDDFKLVPAAEKDIAWLTFKESFDYPAEHEDRLRWAAFKVMGTAWKNFKTKLVGEFVYNPANPDPREKFPWITEQTRNQHPHRLGTAGYAGKEEEWQREDEEAEESCTPLMFGDIPHPRARNWARARYQKHDDGTIFMPNAEDQQVYEAIKELVAEQQALQEACSQRREDDLLTKALGNKEHRGRTRGVGSSVPWKYGFPDYAWQYKKRTSNKAEKDARLVAKIRESIRAELTSGFDEKLESMRAKIRQEIRKEQQIPQAAAAAAHKELGSPTEKRSSCASTELAENPTSVDSAVDHITEPTSCTLTVRVMPTFTVPAAEGLAYKPTLETRVHGAQLRAGCAKVQVDSVKPEYELFPLKYPPNDEVLSLGNARGTFIQWPKDLIEIRVTARPTTAPGSRPPKRPASAPSAPPAQDRHAQSYDVQLQYDTDFGEDRTEADSKAIHEPPPMKKSRKAHSSPQRITLDKPEAKGRGRGGKVQTSLLAPRKLDLGKGQEETKGKEVKKKYVAPQEFQLGMPLVGDDVLAAMGTACKDLHLYYMEKSNARKPSKATDILGQHDGKPFLGPTNYIVVDFKDLFDLYKLRAVDTSLLKCYSLLSWQWCQKHAPEVAFLHPQVVTVTNLQNDRQGMVNYIYDTLWSRRDKEYIIGGLKKTGHDTLIHKKDFSVKQQIGDQCGFHVCHNMRLLYREKVKTLAEFEGTITKSLTTSFEEAMMNTYYATVVM

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.000000 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g47070 SBH 0.0 0.000000 0.052686
Nipponbare | IRGSP 1.0 | RAP-db Os07g0422280 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_09G0012500 RBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_09G0039200 RBH 0 0.071008 0.025493
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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