Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g03690 | OGI:09005170 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:1861957-1864446 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGCCCCCCAATCGCCCCGTCGTTGTGCCCCTCCTCTCTCTCTCTCTCTCTCGCACACCCCCACCCCGCCGCCGCCTCCGCCTCCGTACCCCTACGCCGTGCCATCGCGCCTCCACCACTCGTCGCGCCCTCCACACGCCGCCGCATCAGCGCACGCGTCTTCCCCCTCTCTCGGTCGCTCCCTCCGCATCTCCCCTCCTCAACCCCTCGATCCACGTCGCCGCAGCCCCCTCCCTCGGTCGCTCCCTCCGCTTTCCTCCCCCGCATCGCTCGCGCTCGCTATCCAACCGCCGACGCCACTCCTCCCACCTCTTCGCCGCGCCCCGCCACGCCTCCACCGCCGGCGCCCCCATCGCCACGCTGCGCTACTCCGCGGTGCTCGGGATTGAGGCCGCCGTGCTCGTTGGCACAGCTCGGGACTCCACCTCGTCGCCGATCCCGCCCTCTTCCACTGGAGCTCCCTCGCTAGCCCGATGCAACTACATAAATGCAAATAAATGCAAGCTGCAGGTAATACGCTAATGCTCCCCATGCCCAAAAGGTGTTCGACAAAATGCTTGCTTAGACGTTACAGTTGTGATGTTCAGGGAAATCACTTAGGTTTTAATCCTCGCTGAGCCATATCATATATGAACTACGCCTGCCGCCGCTGCTCCGTCTCCGCCCTTCGTGCCGCTCGGGAGGAGTTGCGACGGGGTCGAGCCCCTCATCGCCGACTACCCTTCTCCGCTCGCAGCCACCGTCGTAGCGTTTAAGTCTCTGCATATGCTGAATCTGAAAGTACCAGCCTGCTCTTTTCTGCTCGTTGGGGATCAATAGGAAATGAATTTCAGACCGATACTAGCCTGCTGTTATAAGTCTCTGCATATGCTGAATCTGAAAGTACCACTTATAGTCATTATAGAACCAAACAGGTTGGAGCTTGCATGCTCAGTTGCGAACAGATGTATTTAGGTGCCAGTCTCTTCGGTTTGCCCATGGCTGCGATGCACAATAGCAGTTGCGAACAGAGTTTTCCTTCCTCGTATACCTCTATGTCCGTCTGATGATGATATGTTCCCGTTTCGCTTCAAGAGGAAGCAATTTCCGGTTAGATTGAGCTTTGCATTGACCATCAATAAGGCGCAGAGTCAAACAATTCCAAATGCAGGCGTCTACTTACCGGAGCCTGTCTTCTCTCATGGTCAATTATACGTCGCGTTGTCTAGAGCAACCTCTAGAACAAACATAAAAATACTATCGATGCCGGTAGAAGACAAGAAACAAAAGAAAAAGTCTAAGTGTACTGGCGTGAAGGACAATGAGAAGAAAGGAAAGGAATTGTCTAAACAGGCTGCAACATACACAAAAAATATTGTGTATAGAGAGGTCCTCACAGATTAGAAAAGGTATATTATGCGACTAATTAACCATCCACAATATGCTTGCTTAAATTCCATTCTTTCTGTAATTTTTATATTCCAAGTCAAACATTTCGTGTGTTTTTTTTCTTGGACAGTAGTAAACATTACTTTCGGTGGGATTTTGGCAAGGCCTATATACACCATTACAGGTATTGTGATCAACTGCAGGTTTTTTATGTGCTACTTATACTAGGAAATGAAAAATCGAAGATTTTTGCATTGTCGTTGTGTCCTACAACTCTACGAGTTTGGATGCAGGATGCTAGCGGACAAGTTATCCAGTGCCTGAACTCTGCTTTATCTAACCTGGTGGCTGACATTGACAACAAATCTATTTACAACACTCTATTATTAGTCTATTACCTGACTCTGGAAAACAACCATCAACTGCAAAACCATTTGATTCACATCCCTTCACCTGATCCCACCTGGTTTCTTGCTTAGGTAGCTTCATGGTAAGGTCAATATGGAGCTGATGATACTTCTATATGGTTCTTTTTTCTTCTTCTTTAATTTTTTTACCTAACAAAAGTACTGAAGCATAGTTCTTAGGTCTGATGATTTATTTAGCTGAATGCTGATTGTTTTCTCTTAAACCTTTCCACGCAGACTATGACAAAGGAAATTTGGATGCAGGCATGTCACAAACTGATTTCATCATTATGGAATCTGCAGAAATTCCAGGCTTTGGTGGTACTAGCTGGACTGACCAGGAGACCTTGCTTCTTTTGGAAGCTTTAGTAATTTTGCAAGCAAAATGGGGTGACATTGCAGAGCATGTTGATACAAAAACCAAAGCACAATGCATGCTGCACTGAGCAAGAGCGTTCTATTTGTTCAGTAAAATTTGTCGGTCCATTTGGTTGTGACGGAGCGTGGGGCTCCTCACCGGGAGACCGCGCAGGCCCCCCTTTGCCGGTTCGGCCGGGGACCCTAGGTGAGACTCTAAGCTCCCAATCTGTATGTGGAAGGTTCGCCAGACAGGAAGCACAGAAGACGCCGGCGATGTATACAGGTTCGGGCCGCTTAGAAGCGTAATACCCTACTCCTGTGTTTTGGTGGATTCGTGTGTGAAGGAGCTACA
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| CDS seq | ATGGCGCCCCCCAATCGCCCCGTCGTTGTGCCCCTCCTCTCTCTCTCTCTCTCTCGCACACCCCCACCCCGCCGCCGCCTCCGCCTCCGTACCCCTACGCCGTGCCATCGCGCCTCCACCACTCGTCGCGCCCTCCACACGCCGCCGCATCAGCGCACGCGTCTTCCCCCTCTCTCGGTCGCTCCCTCCGCATCTCCCCTCCTCAACCCCTCGATCCACGTCGCCGCAGCCCCCTCCCTCGGTCGCTCCCTCCGCTTTCCTCCCCCGCATCGCTCGCGCTCGCTATCCAACCGCCGACGCCACTCCTCCCACCTCTTCGCCGCGCCCCGCCACGCCTCCACCGCCGGCGCCCCCATCGCCACGCTGCGCTACTCCGCGGTGCTCGGGATTGAGGCCGCCGTGCTCGTTGGCACAGCTCGGGACTCCACCTCGTCGCCGATCCCGCCCTCTTCCACTGGAGCTCCCTCGCTAGCCCGATGCAACTACATAAATGCAAATAAATGCAAGCTGCAGACTATGACAAAGGAAATTTGGATGCAGGCATGTCACAAACTGATTTCATCATTATGGAATCTGCAGAAATTCCAGGCTTTGGTGGTACTAGCTGGACTGACCAGGAGACCTTGCTTCTTTTGGAAGCTTTAG
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| Protein seq | MAPPNRPVVVPLLSLSLSRTPPPRRRLRLRTPTPCHRASTTRRALHTPPHQRTRLPPLSVAPSASPLLNPSIHVAAAPSLGRSLRFPPPHRSRSLSNRRRHSSHLFAAPRHASTAGAPIATLRYSAVLGIEAAVLVGTARDSTSSPIPPSSTGAPSLARCNYINANKCKLQTMTKEIWMQACHKLISSLWNLQKFQALVVLAGLTRRPCFFWKL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g03690 | LOC_Os09g03690.1 | Chr09 | 1861957 | 1864446 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGCCCCCCAATCGCCCCGTCGTTGTGCCCCTCCTCTCTCTCTCTCTCTCTCGCACACCCCCACCCCGCCGCCGCCTCCGCCTCCGTACCCCTACGCCGTGCCATCGCGCCTCCACCACTCGTCGCGCCCTCCACACGCCGCCGCATCAGCGCACGCGTCTTCCCCCTCTCTCGGTCGCTCCCTCCGCATCTCCCCTCCTCAACCCCTCGATCCACGTCGCCGCAGCCCCCTCCCTCGGTCGCTCCCTCCGCTTTCCTCCCCCGCATCGCTCGCGCTCGCTATCCAACCGCCGACGCCACTCCTCCCACCTCTTCGCCGCGCCCCGCCACGCCTCCACCGCCGGCGCCCCCATCGCCACGCTGCGCTACTCCGCGGTGCTCGGGATTGAGGCCGCCGTGCTCGTTGGCACAGCTCGGGACTCCACCTCGTCGCCGATCCCGCCCTCTTCCACTGGAGCTCCCTCGCTAGCCCGATGCAACTACATAAATGCAAATAAATGCAAGCTGCAGACTATGACAAAGGAAATTTGGATGCAGGCATGTCACAAACTGATTTCATCATTATGGAATCTGCAGAAATTCCAGGCTTTGGTGGTACTAGCTGGACTGACCAGGAGACCTTGCTTCTTTTGGAAGCTTTAG
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| Protein seq | MAPPNRPVVVPLLSLSLSRTPPPRRRLRLRTPTPCHRASTTRRALHTPPHQRTRLPPLSVAPSASPLLNPSIHVAAAPSLGRSLRFPPPHRSRSLSNRRRHSSHLFAAPRHASTAGAPIATLRYSAVLGIEAAVLVGTARDSTSSPIPPSSTGAPSLARCNYINANKCKLQTMTKEIWMQACHKLISSLWNLQKFQALVVLAGLTRRPCFFWKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.234379 | 0.588871 | 0.383059 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001080 | RBH | 0.172642 | 0.000000 | 1.388937 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001060 | RBH | 0.135038 | 1.352159 | 1.679745 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0001110 | RBH | 0.000000 | 0.0 | 3.707758 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0000980 | RBH | 0.168383 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0001170 | RBH | 0.000000 | 0.000000 | 8.726746 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0001170 | RBH | 0.060197 | 0.083974 | 0.593612 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0035800 | RBH | 2.1761535 | 12.326798 | 4.0339005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001110 | RBH | 0.000000 | 0.113977 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001210 | RBH | 2.384327 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
