Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g43550 | OGI:08078270 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:27547971-27549173 | ||||||||
| Gene Symbol | GL1A, R2R3-MYB, OsGL1A, DLN218, OsDLN218 | ||||||||||
| DNA seq | TATTTCTTTATTGAGTTACTGCATCTAGTCTTGTTCGTGAAATTAGTAACAAGAATTTTCTTCTCGGCAAGGCATGACAAATACCATAGATTTTCAGACCGAGAACAAATTTACATCCAACAACCTAAATAACCATATCATCAACTGAACTAAGTATGAGTGGAACAGTATTTACACAAAATGGAGGAAGTGATCAACAAGATCACTGATCATCTCCCCAAAGGAAGTATTCCTCTATCTGATCCTAATTAAGAAGGACTAACACTAAGCAGTAACCAAAGCTAGCTAAGAAATCAAGAACCCAAAAGAGAAGAGAAAGTGTAACGATCATGGATTGGTTTGCAGGATCATTTCATTTCATGGGGAGGCTTCTGAAGTCGAGCATGCCAGCCCTGAGGCCGAGGAAGTTGTTGCCGGCGCCGGCGCCGGCGCCGCCGCCGCTGCACTTGCACTCCTTCTGGAGGCCGAGGCTGCAGCCGAAGCAGAGGCCGCCGCGGCGGCGCTGCAGCTCCGGCGCCCTCACGATCATCGCCGGCTTCGCCTCATAGTCATCGTCTTCTTCCTGGCACGACGGCGGGCTGATGCAGAGGTCCAGGTTGAGGTCGGGGCACTTGGGCGGCTTGCTGAGTATGAGCTGCTCCTCCTTCGTCGTTGGCGGCGGCTGGGGATGGAAGGAGATGGTGGCGGCGGCGGCGTTGACGGGGCGGTGCGTGACGGGGTCGATCCCCCTGCCGAGAAGCTTCCGGCGGATGTGCGTGTTCCAGTAGTTCTTGATCTCGTTGTCCGTCCTCCCCGGCAGCCTCGCCGCGATCAGAGACCACCTGACAGATGATGAAAATCGATGGATGGAAGAGAGGCGAGGTGAGGCAGAAGGCAAGAAAAGAGAAGCGTAGTTACTTGTTGCCGAGGAGGCTGTGGAGCTTGATGATGAGGTCGTCCTCGTCGGCGGTGAAGTTGCCGCGCTTGAGGTCGGGGCGGAGGTAGTTGATCCAGCGGAGGCGGCAGCTCTTGCCGCAGCGGAGGAGGCCGGCGGCCTTGGGGAGCGAGCGCCAGCAGCCCTCGCCGTGGGCGCGGATGTAGGCGACGAGGCGCTCGTCCTCCTCCTTGGTCCACGCGCCCTTGTTAGTGTGCTCCTTCTCGCAGCACGGCGACCTCCCCATCGCTGTTGGTCTCGGCCGGCGGCGAGTCGTCGTCGTCGTGGGT
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| CDS seq | ATGGGGAGGTCGCCGTGCTGCGAGAAGGAGCACACTAACAAGGGCGCGTGGACCAAGGAGGAGGACGAGCGCCTCGTCGCCTACATCCGCGCCCACGGCGAGGGCTGCTGGCGCTCGCTCCCCAAGGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGCCGACGAGGACGACCTCATCATCAAGCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGCGGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCCGGAAGCTTCTCGGCAGGGGGATCGACCCCGTCACGCACCGCCCCGTCAACGCCGCCGCCGCCACCATCTCCTTCCATCCCCAGCCGCCGCCAACGACGAAGGAGGAGCAGCTCATACTCAGCAAGCCGCCCAAGTGCCCCGACCTCAACCTGGACCTCTGCATCAGCCCGCCGTCGTGCCAGGAAGAAGACGATGACTATGAGGCGAAGCCGGCGATGATCGTGAGGGCGCCGGAGCTGCAGCGCCGCCGCGGCGGCCTCTGCTTCGGCTGCAGCCTCGGCCTCCAGAAGGAGTGCAAGTGCAGCGGCGGCGGCGCCGGCGCCGGCGCCGGCAACAACTTCCTCGGCCTCAGGGCTGGCATGCTCGACTTCAGAAGCCTCCCCATGAAATGA
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| Protein seq | MGRSPCCEKEHTNKGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIRRKLLGRGIDPVTHRPVNAAAATISFHPQPPPTTKEEQLILSKPPKCPDLNLDLCISPPSCQEEDDDYEAKPAMIVRAPELQRRRGGLCFGCSLGLQKECKCSGGGAGAGAGNNFLGLRAGMLDFRSLPMK |
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| Function | Myb-related protein Zm38 [UniProtKB/Swiss-Prot:P20025] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g43550 | LOC_Os08g43550.1 | Chr08 | 27547971 | 27549173 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGAGGTCGCCGTGCTGCGAGAAGGAGCACACTAACAAGGGCGCGTGGACCAAGGAGGAGGACGAGCGCCTCGTCGCCTACATCCGCGCCCACGGCGAGGGCTGCTGGCGCTCGCTCCCCAAGGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGCCGACGAGGACGACCTCATCATCAAGCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGCGGCGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCCGGAAGCTTCTCGGCAGGGGGATCGACCCCGTCACGCACCGCCCCGTCAACGCCGCCGCCGCCACCATCTCCTTCCATCCCCAGCCGCCGCCAACGACGAAGGAGGAGCAGCTCATACTCAGCAAGCCGCCCAAGTGCCCCGACCTCAACCTGGACCTCTGCATCAGCCCGCCGTCGTGCCAGGAAGAAGACGATGACTATGAGGCGAAGCCGGCGATGATCGTGAGGGCGCCGGAGCTGCAGCGCCGCCGCGGCGGCCTCTGCTTCGGCTGCAGCCTCGGCCTCCAGAAGGAGTGCAAGTGCAGCGGCGGCGGCGCCGGCGCCGGCGCCGGCAACAACTTCCTCGGCCTCAGGGCTGGCATGCTCGACTTCAGAAGCCTCCCCATGAAATGA
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| Protein seq | MGRSPCCEKEHTNKGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIRRKLLGRGIDPVTHRPVNAAAATISFHPQPPPTTKEEQLILSKPPKCPDLNLDLCISPPSCQEEDDDYEAKPAMIVRAPELQRRRGGLCFGCSLGLQKECKCSGGGAGAGAGNNFLGLRAGMLDFRSLPMK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.422514 | 0.149422 | 1.200495 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0549000 | RBH | 0.626800 | 0.229492 | 4.718536 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36730 | RBH | 0.0 | 0.0 | 0.580203 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0549000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024600 | RBH | 0.0 | 19.784311 | 2.209783 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0024380 | RBH | 0.0 | 0.932701 | 1.688034 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0024380 | RBH | 2.218245 | 13.251152 | 4.695163 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024710 | RBH | 0.494824 | 0.328415 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0024350 | RBH | 1.857738 | 17.647507 | 4.986766 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0437700 | RBH | 6.139104 | 57.3905715 | 2.6770865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024190 | RBH | 0.438709 | 0.697493 | 0.743180 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0456900 | RBH | 12.325503 | 60.3941955 | 0.4835355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023560 | RBH | 0.0 | 0.586206 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023920 | RBH | 0.165518 | 37.999928 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023740 | RBH | 4.006341 | 31.187717 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024620 | RBH | 0.635781 | 1.958383 | 1.167231 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023830 | RBH | 0.656316 | 3.797905 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024060 | RBH | 0.546196 | 0.0 | 0.463590 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0024220 | RBH | 3.142701 | 41.056370 | 1.251944 |
