Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g39750 | OGI:08072470 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:25168758-25170808 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATCTTGGCAAATCCTCCTCCACCAGCGCGTCGCTGAAGAAGCTCCAGGAAGACGGCGCCCTTCCCGGCCGTGGAACCATGGAAAGGAAGCAGGAGGTACTGATCCCCAGCCCGTCTTAGGTCGCATGGTTGCGATGGAAGACTACATTCTCTGCGGTTTTCTTCCTCCGCCTTCCGAATTTCTTCTCTTGGTTTTGAACTTTTACGGTCTTTCTCTGCTCCACCTGAACCCCAATTCTATCGCCTTCCTTAGTATCTTTTCTCATCTTTGTGAGGCCTACATTGGGGTAGAGCCCTTTCTCGATCTCTTTCGCTTCTACTACGAGCTGCGTTGAATGGAATCCAACAGGGTTCCGACTTTGGGATGGCCTGAAGTCACGTTATATCCCCTTCCAGTGCCCTTCCTCTCGCAGCAAATGGCGGATGAGGTGGTTCTACCTCCAGATCGAAGATTCGGACCCTGTCTTCGTTGTTCCTGAGGAACAACCGGACAAGATTTCGTCTTGGACCGCAATGCCCCCCTTGACCCCTTCTCTTCAGTCGTTTATCGACATTGTCGACGATCTCCGAGTACGAGGCTTGTCGGGGTATGAAGTCGCTGCAGACTTTGTTGGTAGACGGATCCAGCCGCTCCAGGCTCGAGTCCATCCAGCCTTTGACTATTCCGGACCGGAGGACGCGACCCGGGTTTCTCCTCAGGGTATCTTTCTTGCATTTATCCTGACAGGCTCGTGTTCACGTTCCTCCTGATTTATCGAAATTTGGTTCTCGATTCACAGGTCTGAACAGCGAAACCGTGGGACGTCGTGTCGGCCAGGTGATGATCAGTGGCCCGACAACGGCGAGTAACATCCCCGTTCCCCTTTGTGAGAAGGGGGCGGCCGAACGTGACGCTGGCATCAATGTAAGTATACTCAATATGTATTCTGAGTTTCCCTTCCGAGATCGCGTTGTGACCTGATTAAGCGTAGGCTCTTCCTCTGACTGACATCATCGGGCCGCTCGCGGACCATCAGGTGGCGGCGTCACTGAAGGAGAAGGTCGCCAAGGAGGCGTCCGATGCTGCTGCTGCTGCCGCCACCACAAGTGGTGGCAATGTTCCGACAAAGGGGAGAAAATTCTCCTCTGTAAGCGGACATCATCGCAAGGCATCTACCCCCTCGGTAAGCTATCCTGTTGTCTGATCGTGCAGCCAGAAGAATTTCGCCTTACTTCGCATCAACCGTTTTTCAGGCCTCGGACGCGTCTCCCCCGCCTCCACGACGAGAACGACTTGTGACGGTTGGTGAGAAGTAAGTGGATGAACTTGAGTTCCCGTGACTTTGTTTGAGCGTTGTATGAACCATGGCTGTTCTCACAGGGCGGCGCGGTCGAAGGCGGTGCAAGATGAGTCCGGAGGGACTTCCGGCGCGTCTCCCGCTGTGGCCTCGACGGATGTCGTGCTTGCGCCCGGGAGCCGCGAGGCGACACCAAGCGGCCCAGCCAACGATCCCGCGGCTGGTCGCGGTCCACCGGCTACCGTCCTCACTTGGGAGGAGCTCCAGGTCGAAATGGGGCGCCTCCTCGAGGCTGGTGCTCGTAGCATTGGTCGCGAGATTGCGGAGGCGAGGTCGGCGGCGGCGTCAGCGAACGAGCGTGCTGACCGGCTGGTACACGAGTTGGCGGAGGCTCATTAAGACCTCAAGAAGATGAGGGAGTTGGTAGACGGCAACGAGCGACAACAACAGGGGCTCGAGCACCGCATGTCGGAGCTCGGGAACAATCTGTCGGAAATCCATGGCTCATTGCGGGTCACCTATACTGGTCTACACCAGCTCGCCGGGGAGTGCGGCATCAAGTCTACAATCCTGGCAAATCCCAATGAGTTCTCGCTGACGTCTTCTCTTGCGGAGCTGGCAGCGGCGATGGAGGAGATCCCCTCCAAGCATGCGGCCAAGATCGGGGAGGAGACGTCTAACGGGATCAACACCGGGGCGTGCCATGTCCTTGCGTATGTGAAGTTGGCGCATCCTGAACTCGATCTGCGCGAGATCTTGGATCAGGGGTGA
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| CDS seq | ATGGATCTTGGCAAATCCTCCTCCACCAGCGCGTCGCTGAAGAAGCTCCAGGAAGACGGCGCCCTTCCCGGCCGTGGAACCATGGAAAGGAAGCAGGAGTGCCCTTCCTCTCGCAGCAAATGGCGGATGAGGTGGTTCTACCTCCAGATCGAAGATTCGGACCCTGTCTTCGTTGTTCCTGAGGAACAACCGGACAAGATTTCGTCTTGGACCGCAATGCCCCCCTTGACCCCTTCTCTTCAGTCGTTTATCGACATTGTCGACGATCTCCGAGCTCGTGTTCACGTTCCTCCTGATTTATCGAAATTTGGTTCTCGATTCACAGGTCTGAACAGCGAAACCGTGGGACGTCGTGTCGGCCAGGTGATGATCAGTGGCCCGACAACGGCGAGTAACATCCCCGTTCCCCTTTGTGAGAAGGGGGCGGCCGAACGTGACGCTGGCATCAATGCTCTTCCTCTGACTGACATCATCGGGCCGCTCGCGGACCATCAGGTGGCGGCGTCACTGAAGGAGAAGGTCGCCAAGGAGGCGTCCGATGCTGCTGCTGCTGCCGCCACCACAAGTGGTGGCAATGTTCCGACAAAGGGGAGAAAATTCTCCTCTGTAAGCGGACATCATCGCAAGGCATCTACCCCCTCGGCCTCGGACGCGTCTCCCCCGCCTCCACGACGAGAACGACTTGTGACGGTTGGTGAGAAGGCGGCGCGGTCGAAGGCGGTGCAAGATGAGTCCGGAGGGACTTCCGGCGCGTCTCCCGCTGTGGCCTCGACGGATGTCGTGCTTGCGCCCGGGAGCCGCGAGGCGACACCAAGCGGCCCAGCCAACGATCCCGCGGCTGGTCGCGGTCCACCGGCTACCGTCCTCACTTGGGAGGAGCTCCAGGTCGAAATGGGGCGCCTCCTCGAGGCTGGTGCTCGTAGCATTGGTCGCGAGATTGCGGAGGCGAGGTCGGCGGCGGCGTCAGCGAACGAGCGTGCTGACCGGCTGAAGATGAGGGAGTTGGTAGACGGCAACGAGCGACAACAACAGGGGCTCGAGCACCGCATGTCGGAGCTCGGGAACAATCTGTCGGAAATCCATGGCTCATTGCGGGTCACCTATACTGGTCTACACCAGCTCGCCGGGGAGTGCGGCATCAAGTCTACAATCCTGGCAAATCCCAATGAGTTCTCGCTGACGTCTTCTCTTGCGGAGCTGGCAGCGGCGATGGAGGAGATCCCCTCCAAGCATGCGGCCAAGATCGGGGAGGAGACGTCTAACGGGATCAACACCGGGGCGTGCCATGTCCTTGCGTATGTGAAGTTGGCGCATCCTGAACTCGATCTGCGCGAGATCTTGGATCAGGGGTGA
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| Protein seq | MDLGKSSSTSASLKKLQEDGALPGRGTMERKQECPSSRSKWRMRWFYLQIEDSDPVFVVPEEQPDKISSWTAMPPLTPSLQSFIDIVDDLRARVHVPPDLSKFGSRFTGLNSETVGRRVGQVMISGPTTASNIPVPLCEKGAAERDAGINALPLTDIIGPLADHQVAASLKEKVAKEASDAAAAAATTSGGNVPTKGRKFSSVSGHHRKASTPSASDASPPPPRRERLVTVGEKAARSKAVQDESGGTSGASPAVASTDVVLAPGSREATPSGPANDPAAGRGPPATVLTWEELQVEMGRLLEAGARSIGREIAEARSAAASANERADRLKMRELVDGNERQQQGLEHRMSELGNNLSEIHGSLRVTYTGLHQLAGECGIKSTILANPNEFSLTSSLAELAAAMEEIPSKHAAKIGEETSNGINTGACHVLAYVKLAHPELDLREILDQG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g39750 | LOC_Os08g39750.1 | Chr08 | 25168758 | 25170808 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATCTTGGCAAATCCTCCTCCACCAGCGCGTCGCTGAAGAAGCTCCAGGAAGACGGCGCCCTTCCCGGCCGTGGAACCATGGAAAGGAAGCAGGAGTGCCCTTCCTCTCGCAGCAAATGGCGGATGAGGTGGTTCTACCTCCAGATCGAAGATTCGGACCCTGTCTTCGTTGTTCCTGAGGAACAACCGGACAAGATTTCGTCTTGGACCGCAATGCCCCCCTTGACCCCTTCTCTTCAGTCGTTTATCGACATTGTCGACGATCTCCGAGCTCGTGTTCACGTTCCTCCTGATTTATCGAAATTTGGTTCTCGATTCACAGGTCTGAACAGCGAAACCGTGGGACGTCGTGTCGGCCAGGTGATGATCAGTGGCCCGACAACGGCGAGTAACATCCCCGTTCCCCTTTGTGAGAAGGGGGCGGCCGAACGTGACGCTGGCATCAATGCTCTTCCTCTGACTGACATCATCGGGCCGCTCGCGGACCATCAGGTGGCGGCGTCACTGAAGGAGAAGGTCGCCAAGGAGGCGTCCGATGCTGCTGCTGCTGCCGCCACCACAAGTGGTGGCAATGTTCCGACAAAGGGGAGAAAATTCTCCTCTGTAAGCGGACATCATCGCAAGGCATCTACCCCCTCGGCCTCGGACGCGTCTCCCCCGCCTCCACGACGAGAACGACTTGTGACGGTTGGTGAGAAGGCGGCGCGGTCGAAGGCGGTGCAAGATGAGTCCGGAGGGACTTCCGGCGCGTCTCCCGCTGTGGCCTCGACGGATGTCGTGCTTGCGCCCGGGAGCCGCGAGGCGACACCAAGCGGCCCAGCCAACGATCCCGCGGCTGGTCGCGGTCCACCGGCTACCGTCCTCACTTGGGAGGAGCTCCAGGTCGAAATGGGGCGCCTCCTCGAGGCTGGTGCTCGTAGCATTGGTCGCGAGATTGCGGAGGCGAGGTCGGCGGCGGCGTCAGCGAACGAGCGTGCTGACCGGCTGAAGATGAGGGAGTTGGTAGACGGCAACGAGCGACAACAACAGGGGCTCGAGCACCGCATGTCGGAGCTCGGGAACAATCTGTCGGAAATCCATGGCTCATTGCGGGTCACCTATACTGGTCTACACCAGCTCGCCGGGGAGTGCGGCATCAAGTCTACAATCCTGGCAAATCCCAATGAGTTCTCGCTGACGTCTTCTCTTGCGGAGCTGGCAGCGGCGATGGAGGAGATCCCCTCCAAGCATGCGGCCAAGATCGGGGAGGAGACGTCTAACGGGATCAACACCGGGGCGTGCCATGTCCTTGCGTATGTGAAGTTGGCGCATCCTGAACTCGATCTGCGCGAGATCTTGGATCAGGGGTGA
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| Protein seq | MDLGKSSSTSASLKKLQEDGALPGRGTMERKQECPSSRSKWRMRWFYLQIEDSDPVFVVPEEQPDKISSWTAMPPLTPSLQSFIDIVDDLRARVHVPPDLSKFGSRFTGLNSETVGRRVGQVMISGPTTASNIPVPLCEKGAAERDAGINALPLTDIIGPLADHQVAASLKEKVAKEASDAAAAAATTSGGNVPTKGRKFSSVSGHHRKASTPSASDASPPPPRRERLVTVGEKAARSKAVQDESGGTSGASPAVASTDVVLAPGSREATPSGPANDPAAGRGPPATVLTWEELQVEMGRLLEAGARSIGREIAEARSAAASANERADRLKMRELVDGNERQQQGLEHRMSELGNNLSEIHGSLRVTYTGLHQLAGECGIKSTILANPNEFSLTSSLAELAAAMEEIPSKHAAKIGEETSNGINTGACHVLAYVKLAHPELDLREILDQG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.130134 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g31240 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022330 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022220 | SBH | 0.000000 | 3.355242 | 0.664057 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022110 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0022110 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0401600 | RBH | 0.0015525 | 1.045134 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0022010 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0422100 | RBH | 0.5808095 | 2.986347 | 0.457275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021360 | SBH | 0.0 | 0.782181 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011070 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021490 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022310 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021850 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0022010 | SBH | 0.0 | 2.558226 | 1.113355 |
