Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g38220 | OGI:08069820 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:24232676-24233972 | ||||||||
| Gene Symbol | DOF24, OsDof24, Dof24, OsDof-24, OsDof25 | ||||||||||
| DNA seq | ACCTTCGTCGTCACCGCGACTGCGACCATAAGAGACTCCCGCTTCCGCCAACCGCCCACCACCCGTTCGACCATTTGCTTGCCCCCGCTCCTCGGTTCCTCCCGACTCCACCGGCGCGCGCGCGCGGAGGGACCAGAGCAGCCACGGCGCCGCCGCGCATGCAGGAGCAGCAGCCGGAGACCGGCCGCCGGCCGGCGCAGCAGTTCGCCACCGTCGACCTGCGCCGTCCCAAGGGCTACGCGGCGGCTCCCGCGACGCCACAGCCTGGTTCGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCAGCGGCGGCGGCGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAATTCTGCTACTACAACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCAAGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTTCGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGAAGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCTCGCCGCCACCACCCCCGTCCTCACCGAAGCCGCCGCTGACTCCGCCGCCAAGACGACGACCGAAGCTACGTCGGAGAAGAAGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCACCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTCCTGCAGCCGGACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTCCGACTACCCGTCCATCACCAAGAGTCTGGCCGACCCGGACCTGCACTTCGAGTGGCCGCCGCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGAGCCCACTCGCCCGGCGGCGGCGGCGGCGGCTCAGGTGGGTGTGGGGGTTTCCAACTACACCCGATGATGATTTCATCAGTTTCCGATTAATTAGTAAATTGCGCGTGGGGTATATGGTGAAAATGATGACGTTAATCTTAGCTTTTTGAGATTAGTGGCCGTGTTTTACTCTCGAGAGGGGCTAACTCAACCAAGTTTGGGTTGTTTTTCATGTGTATAACTCCTATCAAGGCTTGGGCTTTTTTTTTTCATACAATGGTCCTGCTATTTTCTACTCCATTTCTCTACAGCTTTTATTATTGTTTCTG
More
|
||||||||||
| CDS seq | ATGCAGGAGCAGCAGCCGGAGACCGGCCGCCGGCCGGCGCAGCAGTTCGCCACCGTCGACCTGCGCCGTCCCAAGGGCTACGCGGCGGCTCCCGCGACGCCACAGCCTGGTTCGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCAGCGGCGGCGGCGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAATTCTGCTACTACAACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCAAGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTTCGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGAAGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCTCGCCGCCACCACCCCCGTCCTCACCGAAGCCGCCGCTGACTCCGCCGCCAAGACGACGACCGAAGCTACGTCGGAGAAGAAGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCACCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTCCTGCAGCCGGACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTCCGACTACCCGTCCATCACCAAGAGTCTGGCCGACCCGGACCTGCACTTCGAGTGGCCGCCGCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGA
More
|
||||||||||
| Protein seq | MQEQQPETGRRPAQQFATVDLRRPKGYAAAPATPQPGSAATAAAAAGPAATAAAAAAGEGDPCPRCESRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKSSSSSSSSSSSSAAAAAPAAKRQKTSKKRRVTTPEPLAATTPVLTEAAADSAAKTTTEATSEKKTTTSTTTTTPPAPDTTSEITTELVVPAVEEDSFTDLLQPDSAAVTLGLDFSDYPSITKSLADPDLHFEWPPPAFDMASYWPAGAGFADPDPTAVFLNLP |
||||||||||
| Function | Dof zinc finger protein MNB1A [UniProtKB/Swiss-Prot:P38564] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g38220 | LOC_Os08g38220.1 | Chr08 | 24232676 | 24233972 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGGAGCAGCAGCCGGAGACCGGCCGCCGGCCGGCGCAGCAGTTCGCCACCGTCGACCTGCGCCGTCCCAAGGGCTACGCGGCGGCTCCCGCGACGCCACAGCCTGGTTCGGCTGCGACTGCTGCTGCCGCCGCTGGCCCGGCTGCGACGGCGGCAGCGGCGGCGGCGGGGGAGGGTGACCCGTGCCCGCGGTGCGAGTCGCGGGACACCAAATTCTGCTACTACAACAACTACAACACCTCCCAGCCCCGGCACTTCTGCAAGTGTTGCCGCCGCTACTGGACCAAGGGTGGCACGCTCCGCAACGTCCCCGTCGGCGGCGGCACGCGCAAGAAGTCCTCGTCTTCGTCGTCGTCGTCTTCCTCGTCATCCGCCGCCGCCGCAGCACCCGCCGCCAAGCGCCAGAAGACGTCGAAGAAGCGCCGCGTCACGACTCCCGAGCCCCTCGCCGCCACCACCCCCGTCCTCACCGAAGCCGCCGCTGACTCCGCCGCCAAGACGACGACCGAAGCTACGTCGGAGAAGAAGACGACGACTTCCACAACGACGACGACACCGCCGGCGCCTGACACCACGAGCGAGATCACCACGGAGCTCGTCGTCCCGGCCGTGGAGGAGGACTCGTTCACGGACCTCCTGCAGCCGGACTCCGCCGCCGTCACCCTCGGCCTCGACTTCTCCGACTACCCGTCCATCACCAAGAGTCTGGCCGACCCGGACCTGCACTTCGAGTGGCCGCCGCCGGCGTTCGACATGGCGTCCTACTGGCCGGCCGGCGCCGGGTTCGCCGACCCGGACCCGACCGCCGTGTTCCTCAACCTCCCATGA
More
|
|||||||
| Protein seq | MQEQQPETGRRPAQQFATVDLRRPKGYAAAPATPQPGSAATAAAAAGPAATAAAAAAGEGDPCPRCESRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKSSSSSSSSSSSSAAAAAPAAKRQKTSKKRRVTTPEPLAATTPVLTEAAADSAAKTTTEATSEKKTTTSTTTTTPPAPDTTSEITTELVVPAVEEDSFTDLLQPDSAAVTLGLDFSDYPSITKSLADPDLHFEWPPPAFDMASYWPAGAGFADPDPTAVFLNLP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.859457 | 0.0 | 2.052954 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0490100 | RBH | 1.307196 | 0.0 | 7.942705 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g29960 | RBH | 0.0 | 0.0 | 0.158016 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0490100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020310 | RBH | 0.0 | 7.982155 | 6.704108 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020230 | RBH | 0.192583 | 9.081648 | 1.464871 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020100 | RBH | 0.323213 | 27.342363 | 6.068996 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020300 | RBH | 0.164951 | 0.181465 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020200 | RBH | 3.599562 | 24.072243 | 9.574983 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0385900 | RBH | 8.7274125 | 86.455513 | 43.7117845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020070 | RBH | 0.181400 | 1.185501 | 2.329070 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019410 | RBH | 0.0 | 0.281054 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0019680 | RBH | 0.0 | 25.444363 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019530 | RBH | 1.816292 | 41.106922 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0020380 | RBH | 0.065831 | 0.183920 | 1.757127 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0019730 | RBH | 0.176808 | 7.941500 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G019880 | RBH | 0.0 | 6.215957 | 2.182493 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020040 | RBH | 0.0 | 29.253141 | 7.799159 |
