Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g38210 | OGI:08069800 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:24222406-24228746 | ||||||||
| Gene Symbol | OsbHLH031 | ||||||||||
| DNA seq | GCAGGCGAGAGAGAGGAACTGAGGAAGCGAAGCGAAGCGAGAGAGGAGGAGAAAGCCCGGAGAGCTTGCCCTCGCCGCGCCGCGGAGATCCGCTTCCCCATCCCCCCAACACGTCGCCGCCGCCGCCGCCTTCCTTGCTGCGCGGGGTAATGCGCGGCCATGGGACTGCAAGGTACGCGCGCTCTCTCTCTCCTCTTCCCTGTTCGTTCGTTCGTTCGCTCGCCGGAGTGGGGGTTTTCGCCGAGGTTTTCTCCTCCTGAGATCGATTTGGTTGATGTATACGCAGGGAATAAGGCGACGCACGACTTCCTCTCGCTGTACGCCGCCGCCGCCACCGCCACGGACTACTCGCCGCTCCCGCGCCACCCGGACTCCAAGCCCTCGGCGCCGGCGCCGCCGCCCGCTCAAGGTGAGCTAGCTCACGCAATTTTTTTTTTCTCCCGGATGGTGAGGTGGATCTCCCGTCTCGAAATACTTTGCCAAATTCGGCATAGTTTTTTTTTTCTTTTCTTGTTCTCGTGTGAAACCACACAGAATTAACCAGAACGGATCAAGGAATTGCTACCGTCATAATCCTACTATTTGCAGTGGTTTAAAAACTAAATACTAGGAGTATATCATTATGGTTTATGTCTTGTGGAAAAAGATAAACTTTTTTGCGATGTTTGGTCAAGGAAAACGACGAGTTAACGAAGGGAAATGATCACGTGTAGCTAGGCTGTGTGTGTGAGAGAGAGAGAGGGGGCACGATGCAAAGAGACGTCCACGACTTCCTTTCTGTTGCAGTCTACGATTTTCTTTTTCAAAAATTCCGAATGTTAGTGTGCAAAAGTGGTCGGCATATCATTATTCTTGCAGGTTGTCATGCCAGATCATTATCGGTCGATCAGATCTCCGCAAGTTGGTTTTCGAATTCGTATTCTTATTATTACTACAAGTTTAAACTGTTTTCATCCAAACCACTCGATCCACTCCATATTATGCATGCTAAATTGCACAAAAAAAAAGTAATTGAGAGATGGATTTTTGATGGATTTTTTTTCGATGATGCTGAACTTGTGATCATTTCCGTTGCAGATTTCTTCCTCAAGACACACGACTTCCTGCCGCAGGTAGAGAAGAGAGCCGACCAGACACCACCGCCGCCGCCGCCGCCGCCGCCCCACGCCGCGGTCACCGCCGAGAAGCAGCTGCTCCACCAGCACGCGTTGGCCGCCGCCGGCGCGTTCACCATCAACCACGCCGTGGCCGCGGCCGCCACCGCCGTCAAGCAGGAGCCGCCCTTCGCGCCGTGGTGCCAGCCCGTCGCCGCCGTAGATCCCCGAGGTACGCCCGTGCTCTCGTCGCTTGCGCCTTCGATCGCGATCGTCGTGAGCCGCGCCGCGCGCGTGGCGGTGCCCGCCGGTGGTTGGGCGCGCCGCGCGCCACCTCCTCCACGTGCCCGGCGCGGCGCCTTCCTCCTCCTCCGGTGGTTGGGGCGTCGGCGTCGCCGCCGCGCGGCGAGCACGTCGACGCACGCGCGCGACGCGCGTAGCTGGTGGCCACCCGCTGACACGCGGAGGCGGTAGGGGGATGGTAGGGTGGGCGGGGCTAGGGAGTAGGCGAGTAGGCCTGGCCGGCCGCACGGGGGACGTGGGCTCGCTGGGCCCGGATGCGTGTGGGGGACGGGCCTGGACGTGGGCCAGAGGCTGCGTGCTGGGTGCACGTGGATAGCAGCATGGGCCCGGGTACGGGCCTGGTTGTGGGCCATGGGACGTGAGCACTAGAGCGCTCGCTTTTCTGGATAGACCCGGACCACAAGTAATACTGGGACAAGCAGATGAATCCACTTTCAAACTTAAAAAAGCTTACTTTGTATATGAATTTTATTCTATAGAATGGAGGAGGTAGTAAATCATATTGCCATTTGTTATATATCATTGTATTATTAGGATTTTATAAGTGAAGCTTGGGCTTTACGATAAGAGTTAATTAAAGTGTTCATAGTCCACTAAAAAAAGTGTTAATAGATTCTGTAGTATTTTTCACAGGAAACAATGTGACTAATGTGAAAATCATTACATCTAAGGGCTTCTTTTGAATCAAAGGAATTATGATGAATTTCATAAAATTAAAATTCTATATAGAGTAAATTTCACAAAACTACATATACTATGACAAAATTATTACAAAACTACATATTTAACTCAATGTATCACAAAACTATACATTTAACATCAAATTTATCACAAAACTACACATTTAAGATGAAGTGTCACAAAATTACATGTTTAGTAACTAAATTATCATAAAATTACAGGTTTAGAACCAATTTGATCACAAAGTAATAATGTTTATAACTCCACCATAACAATGGTGCTAGGGATTTAAACTCCAAAAGTTGTAGTTTTGTGATAAGTTTCATATTAAATATGCATTTTTGTGATACTTAACCTAAAATCTGCAGTTTTGTGATAAATTTGGTGCTAAATGTGTAGTTTTATGATACAACTCCTTAAGTATGTAGTTTTGTGATAATTTGATCAAAATACATGTAGTTTTGTGAAATTTACTCTTCTATATAAAATTTTCATATGTAGCCCTTTTATTAAAAAGATTGAAGTTTTCCTAATCCAATAAAATTCCTATAGAGTAATAGAATGGTTCATTACATATAAATTTTGGAGAAAACTTAGTAAGAGGTTCAACCTCTTGAAAAAATTCTTCTGAGCCTATCTCTCACGTTCAATTTCCGTATTTTTTCCGTGGTCCAATCAAATAATCATTCTTGTGTTTTTCATGTATTTTACAATCTTCCATTCAGAAATCATGTAATTTTACTATTCCTCTATTTTTTAATCATACGATTTAAAGTACCTTGAATGAATCCTGAACCATGTAACGTGGGTAAACAATTTTTTTACCTTGAGTTTCAACTGGCAAGACTTTTGCTAGGGCAAAGATTCGGGTTTGGATTTAAAAAAAGGATTCGGGTTTGATTCACAGCACTGTTTACCTTACGGTTTTCTCTGTGAATATACAAGTAATAGTTGTCCTTTTGTCGTTCAGCTAACTCCTCTTTCCATCACATGCTTATTACACTTTTTTTTTGTACTACTACAATATTCCAAGTCCAAACAGCACCTCCAAAGGCGAGTACATGAAGATTAAATATTTAACAAACCGTAGTATCCTAAGACGTGGAAAATATATTCAATAATCATCCTGACAATAGACTTTGGAAACATCTAATGATTCTTTCTCTGTTCCAACTCTTCATCCAAACACACTCCTACTAGTTGTACAGTAGTTCAGAAAAACCGGAGGAAAGGGAGCTAAAGGCGTGTGCTTTGTGCTGTTTGTTCACCCGGCAGGTCACCAGTGGTCGCTCCCCTTCGCCGCGCGCGCCGTCGCCGTCGCCTCCTCCAGGCCGCAGCAGCAGCAGCAGCAGCCACCGCCGCCGGAGAGGAAGGGTGGCGGTGGATTCATGGACGCCGGCTCCAGATCCAGTGGCGGCGCGGGCTTCGACGACGACGACGGCCATGCCGCGCGCCGCGAGGTCTCCTCCTCGCTGAAAGGTGGAGTACCTCAATTCTGCATTTCTGATGAATCAGTTTGGTATACGCGCTTTTGGAGACATTTTGGATGTGGGGGGTGGTGAAAATGAACGAGTTTTTGTCGAGATTTTTGTGTTAATTTTGTTTTCTTTTTTTGGGTTTAGAGCTCACGGTCAGGGTGGAAGGGAAAGGTGGGAGCTGCAGCGGCAGCGCTGGCACGGATCAGATGCCGAACACGCCGCGCTCGAAGCACTCCGCCACCGAGCAGCGCAGGCGCAGCAAAATCAACGACAGGTGAGTGGAGAATCGGAGTGCTACTTGTCTAGTTTGATAAGCTCTCGGTTACTAATCTGTCGTTGTATATGCGTAAAAGGATCTTTTGTCGATCTATAAATAAATTTGTGTCAACAGTTTAAGCTGCATTCAACTGTTTGCGCTGCTATTTGCTGGGAAAATAGTCTGCATGAATCCAATGTTGTGAACTTGTGGTGCCACTAGAAAGTGCTCATCTTTCTGCAACATAAATGCCAATTATCTGAACCTTTGAGGAGTTGGTTTGAGGAGAGGCTGTAGCATTTAGGGTAGTTCCTAAGGCTAACAGTGGAGACGGTGCTCATCTTTTCTACAGCAAAGTTGTCCATTGCCTGAGATGCTGGAAGCTGTAGGTGTTTGGTTAGGCTAGAAAGATGTGAATATAATAGATCGTGGATATCCTGTTATTACGGAGTTTGAGAATAATGCGCTGGAGTTTGGAATAGTTATGCTCAAATAGATGAACTACTGCACTGTGAAATGCATCTTAGTTTGGGTTTTCAGATTTCTTGCCAAAAAAAAAGCATTGCTGTTGTGCATATAATTATTGTTTAAATGGTCCATCTAAATTTATTTTGCACGTCCAATTATTTTGCAGATTTCAACTTCTTAGAGACTTATTGCCTCATAATGATCAAAAGAGAGACAAAGCATCATTTCTCTTAGAGGTAAGAAAGTTTATTGATTGCTTTAGTTGTAATCTGTTTTCTATCGACTATCTTTACTATCTCTAACGATATTTATTTCAATTCAGGTTATTGAATACATACGGTTTTTACAAGAGAAAGTACAAAAGTATGAGGTTTCATACCCGGAGTGGAACCAAGAAAATGCAAAGGTTGTGCCATGGACAAACATCTATTTCCGTTCTTCCTGGAAAAATGCGCAGGTAAGTTTGCTACTAACAAATCTTTACATCTTACTTGTCGAGGCTTATTATGAGGTACTAACAAGACTTCCCTTCATCACATGTTTGCTTTGCAGAACAAAGGCCAAGTTCCTGCAGATCATTCACCTGACCCTCCAGAACTTCTGAAAAATGGTTCCCCCTATATGTTCCCTTTTACAGGGAACTCTGATAATAACAATGCAGTTGAAACTGCAGCTGCTTCAGGTGCACAGGATCAGGCAGAAACTGATCCAATGAGTCGTGTGTCTTACAGATCAGTGGACACTCCCAGTCCCAATAATGTTGCAGGTACAATTTCTAGTCCAACCTAGCTTTATAACTTGCAGGACTTCTGCACTCCTTCATTAGAGTTAGAAACTCTCTCAAGTTTCAACCTGTTTGTTAATGTGTAGACAAAGTTACATCTCAGCCACACGCTCAACTGGTGAGACCATCACCTGCAGAGAATCACACAGTAAACTGCGACAAGTTAAATAATTCTGACCTTGCCATCGATGAGGGAACAATCAGTCTATCAAGCCAATATTCCCAAGAGTATGTACTAATAACGTTTTTTTCTGTAAAAACTGCTTTACCCATCTGTGTCACCATTGTTTACGCATTTCTTTTTTTTCTCTTGTTTCCAATTTTGATATGCAACACCTGACATGCATTTTTTTCCACGAATTTTTTGATGAAGTTGGATTTTGTTTTTTTCGTCCATAACAGGTTGCTTAACAAGTTGAATCATGCCCTGGAAAACTCGGGTATAGATTTGTCCCAAGCCAGCATCTCCGTGCAAATAAATCTTGGCAAGAGGGCTATGAAGAGATCTACTCCTGCTGCAACCTCCACTTCTAAGGTAGGATTTATGTCTCGTATTGACACTAAGAGCCACTACATTATGTTTGTGGTAATTGAAATTGGAGCTGGCAATGGATGTTATACATGGTTTAGTTGTTTTACAATGTTGACTTCGTTGGTTATAACACAATTTGGACCTCCGAGGCAATTCTTGGGCAGCATCAGAGCATTTTTACAATCTGCACAATTTAATCCTTTGACATTGTTATCTGATATGCTATTTACGTTATAGGAGCTCACTGATCCGGCATCTAATAGTCAAGCAATGGGCCGTCAGCTTAGGTTGGGTGATGGCGCTGAAGAACATCGACAAGCCTCAAAGCGACACAAATCAGATAACAGCTGATGGTTTGCTCCTGAAAACCCCAGATATTCAACCATTTTTTGCTCCTAACTGTGTACGGGGAGCCCCAAGGTTTTATGTATATTAAGTTTACCTGTGACGTCTCGACAAAACAAGGCCTTGATGTATTCTTTCATTTAATCACTTCGCCGTTCTAGCCCCTAGGGAAGAAAGGAAGCTTCCATTGCAGATTGTGAAGCTGCTTTTGTCCATATGCTTCCATTCATATGAGAAGTTTCTCCCACCCTCTGACAGAATGTCTTTTGTAACATAATTCAGAAATGAGCTATCCAAAGTTCCATCAGTTCCCCTTGTGATGTGTAATGTGTTATTTGTCCCTGAAGATTGAAGTTACACAAGACCAACCTGTAATCTGATGATGGTGTATTTGCAGTCC
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| CDS seq | ATGGGACTGCAAGGGAATAAGGCGACGCACGACTTCCTCTCGCTGTACGCCGCCGCCGCCACCGCCACGGACTACTCGCCGCTCCCGCGCCACCCGGACTCCAAGCCCTCGGCGCCGGCGCCGCCGCCCGCTCAAGATTTCTTCCTCAAGACACACGACTTCCTGCCGCAGGTAGAGAAGAGAGCCGACCAGACACCACCGCCGCCGCCGCCGCCGCCGCCCCACGCCGCGGTCACCGCCGAGAAGCAGCTGCTCCACCAGCACGCGTTGGCCGCCGCCGGCGCGTTCACCATCAACCACGCCGTGGCCGCGGCCGCCACCGCCGTCAAGCAGGAGCCGCCCTTCGCGCCGTGGTGCCAGCCCGTCGCCGCCGTAGATCCCCGAGGTCACCAGTGGTCGCTCCCCTTCGCCGCGCGCGCCGTCGCCGTCGCCTCCTCCAGGCCGCAGCAGCAGCAGCAGCAGCCACCGCCGCCGGAGAGGAAGGGTGGCGGTGGATTCATGGACGCCGGCTCCAGATCCAGTGGCGGCGCGGGCTTCGACGACGACGACGGCCATGCCGCGCGCCGCGAGGTCTCCTCCTCGCTGAAAGAGCTCACGGTCAGGGTGGAAGGGAAAGGTGGGAGCTGCAGCGGCAGCGCTGGCACGGATCAGATGCCGAACACGCCGCGCTCGAAGCACTCCGCCACCGAGCAGCGCAGGCGCAGCAAAATCAACGACAGATTTCAACTTCTTAGAGACTTATTGCCTCATAATGATCAAAAGAGAGACAAAGCATCATTTCTCTTAGAGGTTATTGAATACATACGGTTTTTACAAGAGAAAGTACAAAAGTATGAGGTTTCATACCCGGAGTGGAACCAAGAAAATGCAAAGGTTGTGCCATGGACAAACATCTATTTCCGTTCTTCCTGGAAAAATGCGCAGAACAAAGGCCAAGTTCCTGCAGATCATTCACCTGACCCTCCAGAACTTCTGAAAAATGGTTCCCCCTATATGTTCCCTTTTACAGGGAACTCTGATAATAACAATGCAGTTGAAACTGCAGCTGCTTCAGGTGCACAGGATCAGGCAGAAACTGATCCAATGAGTCGTGTGTCTTACAGATCAGTGGACACTCCCAGTCCCAATAATGTTGCAGACAAAGTTACATCTCAGCCACACGCTCAACTGGTGAGACCATCACCTGCAGAGAATCACACAGTAAACTGCGACAAGTTAAATAATTCTGACCTTGCCATCGATGAGGGAACAATCAGTCTATCAAGCCAATATTCCCAAGAGTTGCTTAACAAGTTGAATCATGCCCTGGAAAACTCGGGTATAGATTTGTCCCAAGCCAGCATCTCCGTGCAAATAAATCTTGGCAAGAGGGCTATGAAGAGATCTACTCCTGCTGCAACCTCCACTTCTAAGGAGCTCACTGATCCGGCATCTAATAGTCAAGCAATGGGCCGTCAGCTTAGGTTGGGTGATGGCGCTGAAGAACATCGACAAGCCTCAAAGCGACACAAATCAGATAACAGCTGA
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| Protein seq | MGLQGNKATHDFLSLYAAAATATDYSPLPRHPDSKPSAPAPPPAQDFFLKTHDFLPQVEKRADQTPPPPPPPPPHAAVTAEKQLLHQHALAAAGAFTINHAVAAAATAVKQEPPFAPWCQPVAAVDPRGHQWSLPFAARAVAVASSRPQQQQQQPPPPERKGGGGFMDAGSRSSGGAGFDDDDGHAARREVSSSLKELTVRVEGKGGSCSGSAGTDQMPNTPRSKHSATEQRRRSKINDRFQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYEVSYPEWNQENAKVVPWTNIYFRSSWKNAQNKGQVPADHSPDPPELLKNGSPYMFPFTGNSDNNNAVETAAASGAQDQAETDPMSRVSYRSVDTPSPNNVADKVTSQPHAQLVRPSPAENHTVNCDKLNNSDLAIDEGTISLSSQYSQELLNKLNHALENSGIDLSQASISVQINLGKRAMKRSTPAATSTSKELTDPASNSQAMGRQLRLGDGAEEHRQASKRHKSDNS |
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| Function | Transcription factor BIM2 [UniProtKB/Swiss-Prot:Q9CAA4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g38210 | LOC_Os08g38210.1 | Chr08 | 24222406 | 24228746 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGACTGCAAGGGAATAAGGCGACGCACGACTTCCTCTCGCTGTACGCCGCCGCCGCCACCGCCACGGACTACTCGCCGCTCCCGCGCCACCCGGACTCCAAGCCCTCGGCGCCGGCGCCGCCGCCCGCTCAAGATTTCTTCCTCAAGACACACGACTTCCTGCCGCAGGTAGAGAAGAGAGCCGACCAGACACCACCGCCGCCGCCGCCGCCGCCGCCCCACGCCGCGGTCACCGCCGAGAAGCAGCTGCTCCACCAGCACGCGTTGGCCGCCGCCGGCGCGTTCACCATCAACCACGCCGTGGCCGCGGCCGCCACCGCCGTCAAGCAGGAGCCGCCCTTCGCGCCGTGGTGCCAGCCCGTCGCCGCCGTAGATCCCCGAGGTCACCAGTGGTCGCTCCCCTTCGCCGCGCGCGCCGTCGCCGTCGCCTCCTCCAGGCCGCAGCAGCAGCAGCAGCAGCCACCGCCGCCGGAGAGGAAGGGTGGCGGTGGATTCATGGACGCCGGCTCCAGATCCAGTGGCGGCGCGGGCTTCGACGACGACGACGGCCATGCCGCGCGCCGCGAGGTCTCCTCCTCGCTGAAAGAGCTCACGGTCAGGGTGGAAGGGAAAGGTGGGAGCTGCAGCGGCAGCGCTGGCACGGATCAGATGCCGAACACGCCGCGCTCGAAGCACTCCGCCACCGAGCAGCGCAGGCGCAGCAAAATCAACGACAGATTTCAACTTCTTAGAGACTTATTGCCTCATAATGATCAAAAGAGAGACAAAGCATCATTTCTCTTAGAGGTTATTGAATACATACGGTTTTTACAAGAGAAAGTACAAAAGTATGAGGTTTCATACCCGGAGTGGAACCAAGAAAATGCAAAGGTTGTGCCATGGACAAACATCTATTTCCGTTCTTCCTGGAAAAATGCGCAGAACAAAGGCCAAGTTCCTGCAGATCATTCACCTGACCCTCCAGAACTTCTGAAAAATGGTTCCCCCTATATGTTCCCTTTTACAGGGAACTCTGATAATAACAATGCAGTTGAAACTGCAGCTGCTTCAGGTGCACAGGATCAGGCAGAAACTGATCCAATGAGTCGTGTGTCTTACAGATCAGTGGACACTCCCAGTCCCAATAATGTTGCAGACAAAGTTACATCTCAGCCACACGCTCAACTGGTGAGACCATCACCTGCAGAGAATCACACAGTAAACTGCGACAAGTTAAATAATTCTGACCTTGCCATCGATGAGGGAACAATCAGTCTATCAAGCCAATATTCCCAAGAGTTGCTTAACAAGTTGAATCATGCCCTGGAAAACTCGGGTATAGATTTGTCCCAAGCCAGCATCTCCGTGCAAATAAATCTTGGCAAGAGGGCTATGAAGAGATCTACTCCTGCTGCAACCTCCACTTCTAAGGAGCTCACTGATCCGGCATCTAATAGTCAAGCAATGGGCCGTCAGCTTAGGTTGGGTGATGGCGCTGAAGAACATCGACAAGCCTCAAAGCGACACAAATCAGATAACAGCTGA
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| Protein seq | MGLQGNKATHDFLSLYAAAATATDYSPLPRHPDSKPSAPAPPPAQDFFLKTHDFLPQVEKRADQTPPPPPPPPPHAAVTAEKQLLHQHALAAAGAFTINHAVAAAATAVKQEPPFAPWCQPVAAVDPRGHQWSLPFAARAVAVASSRPQQQQQQPPPPERKGGGGFMDAGSRSSGGAGFDDDDGHAARREVSSSLKELTVRVEGKGGSCSGSAGTDQMPNTPRSKHSATEQRRRSKINDRFQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYEVSYPEWNQENAKVVPWTNIYFRSSWKNAQNKGQVPADHSPDPPELLKNGSPYMFPFTGNSDNNNAVETAAASGAQDQAETDPMSRVSYRSVDTPSPNNVADKVTSQPHAQLVRPSPAENHTVNCDKLNNSDLAIDEGTISLSSQYSQELLNKLNHALENSGIDLSQASISVQINLGKRAMKRSTPAATSTSKELTDPASNSQAMGRQLRLGDGAEEHRQASKRHKSDNS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g38210 | LOC_Os08g38210.2 | Chr08 | 24223302 | 24228746 | + | MSU_osa1r7 | ||
| CDS seq | ATGCATGCTAAATTGCACAAAAAAAAAGTAATTGAGAGATGGATTTTTGATGGATTTTTTTTCGATGATGCTGAACTTGTGATCATTTCCGTTGCAGATTTCTTCCTCAAGACACACGACTTCCTGCCGCAGGTAGAGAAGAGAGCCGACCAGACACCACCGCCGCCGCCGCCGCCGCCGCCCCACGCCGCGGTCACCGCCGAGAAGCAGCTGCTCCACCAGCACGCGTTGGCCGCCGCCGGCGCGTTCACCATCAACCACGCCGTGGCCGCGGCCGCCACCGCCGTCAAGCAGGAGCCGCCCTTCGCGCCGTGGTGCCAGCCCGTCGCCGCCGTAGATCCCCGAGGTCACCAGTGGTCGCTCCCCTTCGCCGCGCGCGCCGTCGCCGTCGCCTCCTCCAGGCCGCAGCAGCAGCAGCAGCAGCCACCGCCGCCGGAGAGGAAGGGTGGCGGTGGATTCATGGACGCCGGCTCCAGATCCAGTGGCGGCGCGGGCTTCGACGACGACGACGGCCATGCCGCGCGCCGCGAGGTCTCCTCCTCGCTGAAAGAGCTCACGGTCAGGGTGGAAGGGAAAGGTGGGAGCTGCAGCGGCAGCGCTGGCACGGATCAGATGCCGAACACGCCGCGCTCGAAGCACTCCGCCACCGAGCAGCGCAGGCGCAGCAAAATCAACGACAGATTTCAACTTCTTAGAGACTTATTGCCTCATAATGATCAAAAGAGAGACAAAGCATCATTTCTCTTAGAGGTTATTGAATACATACGGTTTTTACAAGAGAAAGTACAAAAGTATGAGGTTTCATACCCGGAGTGGAACCAAGAAAATGCAAAGGTTGTGCCATGGACAAACATCTATTTCCGTTCTTCCTGGAAAAATGCGCAGAACAAAGGCCAAGTTCCTGCAGATCATTCACCTGACCCTCCAGAACTTCTGAAAAATGGTTCCCCCTATATGTTCCCTTTTACAGGGAACTCTGATAATAACAATGCAGTTGAAACTGCAGCTGCTTCAGGTGCACAGGATCAGGCAGAAACTGATCCAATGAGTCGTGTGTCTTACAGATCAGTGGACACTCCCAGTCCCAATAATGTTGCAGACAAAGTTACATCTCAGCCACACGCTCAACTGGTGAGACCATCACCTGCAGAGAATCACACAGTAAACTGCGACAAGTTAAATAATTCTGACCTTGCCATCGATGAGGGAACAATCAGTCTATCAAGCCAATATTCCCAAGAGTTGCTTAACAAGTTGAATCATGCCCTGGAAAACTCGGGTATAGATTTGTCCCAAGCCAGCATCTCCGTGCAAATAAATCTTGGCAAGAGGGCTATGAAGAGATCTACTCCTGCTGCAACCTCCACTTCTAAGGAGCTCACTGATCCGGCATCTAATAGTCAAGCAATGGGCCGTCAGCTTAGGTTGGGTGATGGCGCTGAAGAACATCGACAAGCCTCAAAGCGACACAAATCAGATAACAGCTGA
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| Protein seq | MHAKLHKKKVIERWIFDGFFFDDAELVIISVADFFLKTHDFLPQVEKRADQTPPPPPPPPPHAAVTAEKQLLHQHALAAAGAFTINHAVAAAATAVKQEPPFAPWCQPVAAVDPRGHQWSLPFAARAVAVASSRPQQQQQQPPPPERKGGGGFMDAGSRSSGGAGFDDDDGHAARREVSSSLKELTVRVEGKGGSCSGSAGTDQMPNTPRSKHSATEQRRRSKINDRFQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYEVSYPEWNQENAKVVPWTNIYFRSSWKNAQNKGQVPADHSPDPPELLKNGSPYMFPFTGNSDNNNAVETAAASGAQDQAETDPMSRVSYRSVDTPSPNNVADKVTSQPHAQLVRPSPAENHTVNCDKLNNSDLAIDEGTISLSSQYSQELLNKLNHALENSGIDLSQASISVQINLGKRAMKRSTPAATSTSKELTDPASNSQAMGRQLRLGDGAEEHRQASKRHKSDNS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g38210 | LOC_Os08g38210.4 | Chr08 | 24225693 | 24228746 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACGCCGGCTCCAGATCCAGTGGCGGCGCGGGCTTCGACGACGACGACGGCCATGCCGCGCGCCGCGAGGTCTCCTCCTCGCTGAAAGAGCTCACGGTCAGGGTGGAAGGGAAAGGTGGGAGCTGCAGCGGCAGCGCTGGCACGGATCAGATGCCGAACACGCCGCGCTCGAAGCACTCCGCCACCGAGCAGCGCAGGCGCAGCAAAATCAACGACAGATTTCAACTTCTTAGAGACTTATTGCCTCATAATGATCAAAAGAGAGACAAAGCATCATTTCTCTTAGAGGTTATTGAATACATACGGTTTTTACAAGAGAAAGTACAAAAGTATGAGGTTTCATACCCGGAGTGGAACCAAGAAAATGCAAAGGTTGTGCCATGGACAAACATCTATTTCCGTTCTTCCTGGAAAAATGCGCAGAACAAAGGCCAAGTTCCTGCAGATCATTCACCTGACCCTCCAGAACTTCTGAAAAATGGTTCCCCCTATATGTTCCCTTTTACAGGGAACTCTGATAATAACAATGCAGTTGAAACTGCAGCTGCTTCAGGTGCACAGGATCAGGCAGAAACTGATCCAATGAGTCGTGTGTCTTACAGATCAGTGGACACTCCCAGTCCCAATAATGTTGCAGACAAAGTTACATCTCAGCCACACGCTCAACTGGTGAGACCATCACCTGCAGAGAATCACACAGTAAACTGCGACAAGTTAAATAATTCTGACCTTGCCATCGATGAGGGAACAATCAGTCTATCAAGCCAATATTCCCAAGAGTTGCTTAACAAGTTGAATCATGCCCTGGAAAACTCGGGTATAGATTTGTCCCAAGCCAGCATCTCCGTGCAAATAAATCTTGGCAAGAGGGCTATGAAGAGATCTACTCCTGCTGCAACCTCCACTTCTAAGGAGCTCACTGATCCGGCATCTAATAGTCAAGCAATGGGCCGTCAGCTTAGGTTGGGTGATGGCGCTGAAGAACATCGACAAGCCTCAAAGCGACACAAATCAGATAACAGCTGA
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| Protein seq | MDAGSRSSGGAGFDDDDGHAARREVSSSLKELTVRVEGKGGSCSGSAGTDQMPNTPRSKHSATEQRRRSKINDRFQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYEVSYPEWNQENAKVVPWTNIYFRSSWKNAQNKGQVPADHSPDPPELLKNGSPYMFPFTGNSDNNNAVETAAASGAQDQAETDPMSRVSYRSVDTPSPNNVADKVTSQPHAQLVRPSPAENHTVNCDKLNNSDLAIDEGTISLSSQYSQELLNKLNHALENSGIDLSQASISVQINLGKRAMKRSTPAATSTSKELTDPASNSQAMGRQLRLGDGAEEHRQASKRHKSDNS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g38210 | LOC_Os08g38210.5 | Chr08 | 24226073 | 24228746 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCGAACACGCCGCGCTCGAAGCACTCCGCCACCGAGCAGCGCAGGCGCAGCAAAATCAACGACAGATTTCAACTTCTTAGAGACTTATTGCCTCATAATGATCAAAAGAGAGACAAAGCATCATTTCTCTTAGAGGTTATTGAATACATACGGTTTTTACAAGAGAAAGTACAAAAGTATGAGGTTTCATACCCGGAGTGGAACCAAGAAAATGCAAAGGTTGTGCCATGGACAAACATCTATTTCCGTTCTTCCTGGAAAAATGCGCAGAACAAAGGCCAAGTTCCTGCAGATCATTCACCTGACCCTCCAGAACTTCTGAAAAATGGTTCCCCCTATATGTTCCCTTTTACAGGGAACTCTGATAATAACAATGCAGTTGAAACTGCAGCTGCTTCAGGTGCACAGGATCAGGCAGAAACTGATCCAATGAGTCGTGTGTCTTACAGATCAGTGGACACTCCCAGTCCCAATAATGTTGCAGACAAAGTTACATCTCAGCCACACGCTCAACTGGTGAGACCATCACCTGCAGAGAATCACACAGTAAACTGCGACAAGTTAAATAATTCTGACCTTGCCATCGATGAGGGAACAATCAGTCTATCAAGCCAATATTCCCAAGAGTTGCTTAACAAGTTGAATCATGCCCTGGAAAACTCGGGTATAGATTTGTCCCAAGCCAGCATCTCCGTGCAAATAAATCTTGGCAAGAGGGCTATGAAGAGATCTACTCCTGCTGCAACCTCCACTTCTAAGGAGCTCACTGATCCGGCATCTAATAGTCAAGCAATGGGCCGTCAGCTTAGGTTGGGTGATGGCGCTGAAGAACATCGACAAGCCTCAAAGCGACACAAATCAGATAACAGCTGA
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| Protein seq | MPNTPRSKHSATEQRRRSKINDRFQLLRDLLPHNDQKRDKASFLLEVIEYIRFLQEKVQKYEVSYPEWNQENAKVVPWTNIYFRSSWKNAQNKGQVPADHSPDPPELLKNGSPYMFPFTGNSDNNNAVETAAASGAQDQAETDPMSRVSYRSVDTPSPNNVADKVTSQPHAQLVRPSPAENHTVNCDKLNNSDLAIDEGTISLSSQYSQELLNKLNHALENSGIDLSQASISVQINLGKRAMKRSTPAATSTSKELTDPASNSQAMGRQLRLGDGAEEHRQASKRHKSDNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.293092 | 0.634757 | 1.705456 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0490000 | RBH | 0.346026 | 0.854886 | 6.424614 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g29930 | RBH | 0.920965 | 0.778831 | 3.836612 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0490000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020300 | RBH | 0.085925 | 3.867443 | 2.749531 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020220 | RBH | 0.100864 | 6.036835 | 3.754782 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020090 | RBH | 0.0 | 11.197398 | 7.133588 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020290 | RBH | 0.000000 | 0.697429 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020190 | RBH | 0.755656 | 37.175507 | 8.519345 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0385800 | RBH | 3.1440765 | 24.246517 | 9.49819 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020060 | RBH | 0.078368 | 1.730091 | 1.935053 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0406100 | RBH | 4.466373 | 20.1748485 | 11.037286 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019400 | RBH | 0.062698 | 0.254149 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0019670 | RBH | 0.000000 | 11.040654 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019520 | RBH | 1.134745 | 10.927411 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0020370 | RBH | 0.090756 | 1.316473 | 1.474733 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0019720 | RBH | 0.056736 | 10.044602 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G019870 | RBH | 0.074837 | 10.298418 | 2.756017 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020030 | RBH | 0.0 | 18.970140 | 6.778749 |
