Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g35070 | OGI:08064530 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:22107365-22108051 | ||||||||
| Gene Symbol | OsSub56, SUB56 | ||||||||||
| DNA seq | ATGGCGATGGCGGAAGCGGCCGAGGGACAGCGGCCGCGGCAGCGGCAGCGTCGGCAGCCGCAGCCGCAGCGGCAGCAGCATCCAAGCTGCGGCATCTGCATGGAGCCCATGCCGCCCTCCGAGGCGCACCGCGGCGGCGGCGGCGGCTGCGCGCACGCCTTCTGCCGCGCGTGCCTCGCGGGCCACGTCCGCGCCAAGGTCGAGTCCGGCGGCGGCGCGGGCGCCGTGCGTTGCCCCGACCCGTCGTGCGGCGGCGCGCTCGACCCGGAGCTGTGCCGCGGCGCGCTCCCGGGGGACGTGTTCGAGCGGTGGTGCGCGGCGCTCTGCGAGGCCATGTTCGCCGGCGCGCGGCGGACGTACTGCCCGTACCCTGGCTGCTCCGAGATGATGGTCGCCGACGCCGACGACGAGGGGTGCGCGGGCGTGACGCAGTCGGAGTGCCAGGCGTGCAGGCGGCTGTTCTGCGCGCGGTGCGGCGTGCCGTGGCACGCCGGCGTGAGCTGCGCCGAGTTCGGGCGGCTCGGCGAGGGGGAGCGCGGGCGGGAGGACCTGCTGCTGGTGCAGGCCGCGCGGAACGGCGGGTGGAAGCGCTGCCCGCGCTGCAGGTTCTACGTCGAGAAGTCCCACGGCTGCCTCCACATCACATGCAGGTGCGCCATCTGTGATCCGAGGCTCTGTCGCTGGTGA
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| CDS seq | ATGGCGATGGCGGAAGCGGCCGAGGGACAGCGGCCGCGGCAGCGGCAGCGTCGGCAGCCGCAGCCGCAGCGGCAGCAGCATCCAAGCTGCGGCATCTGCATGGAGCCCATGCCGCCCTCCGAGGCGCACCGCGGCGGCGGCGGCGGCTGCGCGCACGCCTTCTGCCGCGCGTGCCTCGCGGGCCACGTCCGCGCCAAGGTCGAGTCCGGCGGCGGCGCGGGCGCCGTGCGTTGCCCCGACCCGTCGTGCGGCGGCGCGCTCGACCCGGAGCTGTGCCGCGGCGCGCTCCCGGGGGACGTGTTCGAGCGGTGGTGCGCGGCGCTCTGCGAGGCCATGTTCGCCGGCGCGCGGCGGACGTACTGCCCGTACCCTGGCTGCTCCGAGATGATGGTCGCCGACGCCGACGACGAGGGGTGCGCGGGCGTGACGCAGTCGGAGTGCCAGGCGTGCAGGCGGCTGTTCTGCGCGCGGTGCGGCGTGCCGTGGCACGCCGGCGTGAGCTGCGCCGAGTTCGGGCGGCTCGGCGAGGGGGAGCGCGGGCGGGAGGACCTGCTGCTGGTGCAGGCCGCGCGGAACGGCGGGTGGAAGCGCTGCCCGCGCTGCAGGTTCTACGTCGAGAAGTCCCACGGCTGCCTCCACATCACATGCAGGTGCGCCATCTGTGATCCGAGGCTCTGTCGCTGGTGA
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| Protein seq | MAMAEAAEGQRPRQRQRRQPQPQRQQHPSCGICMEPMPPSEAHRGGGGGCAHAFCRACLAGHVRAKVESGGGAGAVRCPDPSCGGALDPELCRGALPGDVFERWCAALCEAMFAGARRTYCPYPGCSEMMVADADDEGCAGVTQSECQACRRLFCARCGVPWHAGVSCAEFGRLGEGERGREDLLLVQAARNGGWKRCPRCRFYVEKSHGCLHITCRCAICDPRLCRW |
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| Function | Probable E3 ubiquitin-protein ligase ARI7 [UniProtKB/Swiss-Prot:Q84RR0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g35070 | LOC_Os08g35070.1 | Chr08 | 22107365 | 22108051 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGATGGCGGAAGCGGCCGAGGGACAGCGGCCGCGGCAGCGGCAGCGTCGGCAGCCGCAGCCGCAGCGGCAGCAGCATCCAAGCTGCGGCATCTGCATGGAGCCCATGCCGCCCTCCGAGGCGCACCGCGGCGGCGGCGGCGGCTGCGCGCACGCCTTCTGCCGCGCGTGCCTCGCGGGCCACGTCCGCGCCAAGGTCGAGTCCGGCGGCGGCGCGGGCGCCGTGCGTTGCCCCGACCCGTCGTGCGGCGGCGCGCTCGACCCGGAGCTGTGCCGCGGCGCGCTCCCGGGGGACGTGTTCGAGCGGTGGTGCGCGGCGCTCTGCGAGGCCATGTTCGCCGGCGCGCGGCGGACGTACTGCCCGTACCCTGGCTGCTCCGAGATGATGGTCGCCGACGCCGACGACGAGGGGTGCGCGGGCGTGACGCAGTCGGAGTGCCAGGCGTGCAGGCGGCTGTTCTGCGCGCGGTGCGGCGTGCCGTGGCACGCCGGCGTGAGCTGCGCCGAGTTCGGGCGGCTCGGCGAGGGGGAGCGCGGGCGGGAGGACCTGCTGCTGGTGCAGGCCGCGCGGAACGGCGGGTGGAAGCGCTGCCCGCGCTGCAGGTTCTACGTCGAGAAGTCCCACGGCTGCCTCCACATCACATGCAGGTGCGCCATCTGTGATCCGAGGCTCTGTCGCTGGTGA
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| Protein seq | MAMAEAAEGQRPRQRQRRQPQPQRQQHPSCGICMEPMPPSEAHRGGGGGCAHAFCRACLAGHVRAKVESGGGAGAVRCPDPSCGGALDPELCRGALPGDVFERWCAALCEAMFAGARRTYCPYPGCSEMMVADADDEGCAGVTQSECQACRRLFCARCGVPWHAGVSCAEFGRLGEGERGREDLLLVQAARNGGWKRCPRCRFYVEKSHGCLHITCRCAICDPRLCRW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0452100 | SBH | 0.0 | 0.0 | 0.414386 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g26460 | SBH | 0.355673 | 0.499864 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0452100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018140 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0018040 | RBH | 0.0 | 1.414302 | 0.208574 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017970 | RBH | 0.0 | 0.000000 | 0.435014 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0018240 | RBH | 0.0 | 0.020892 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0018080 | RBH | 0.0 | 2.814971 | 1.061523 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0353400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0018010 | RBH | 0.0 | 0.118672 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0370500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0017350 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017620 | RBH | 0.0 | 1.551243 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0017450 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0018250 | RBH | 0.0 | 0.061088 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0017660 | RBH | 0.0 | 1.638698 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023340 | SBH | 2.619858 | 10.073223 | 8.634802 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017920 | RBH | 0.0 | 1.369732 | 0.0 |
