Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g33940 | OGI:08062230 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:21240595-21242395 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCCCCCCCCCCCCATTGCCGTCTCGGTTGGACTCCTGTCTCTCTCTTGCTTCCCTACCTTCTCCTTCCTCCTCCTCCCCTTGATTGCTAGGTCGGTCTCTAGGCGGAGGTGGTGAAGTGGAGTGGAGTGGAGAGTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCATCGTCGTTGGAGTTGGAGGAGGTGGTGCCGTGGTGGGGATTGATGGGGAGGCCGCCGTGCTGCGTGAAGGCGGAGGTGAAGAAGGGGCCGTGGACGCCGGAGGAGGACCTCATGCTCGTCGCCTACGTCCAGGAGCACGGCCCGGGCAACTGGCGCGCCGTGCCCACCAACACCGGTGAGCCACCACCACCACCGATCCCCTTTGGTTTTTGTCGCCGGCGGTGGGCGGTGTTCTGATCGACCGGCCGGCGATGGTTGTGCGTGTGTGCAGGGCTGATGCGGTGCAGCAAGAGCTGCCGGCTCCGGTGGACCAACTACCTCCGGCCGGGGATCAAGCGGGGGAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCCCTCCTCGGCAACAGGTAATTTTTTTTTTGGTTTAATTTACGTCGTTTCGTGAATCGGAAGATGAAATTCTTGGCGATCGAGGTTGAGTGATTGATGGATGGGTTGGTTTTTGGAGCCCTAATTAAAGTGCGCGCTTGCGTTTTTTTTTTTTGGCGGTTCTTGATTTTTGGTTAGGTGGGCGGCGATCGCGTCCTACTTGCCGGAGAGGACGGACAACGACATCAAGAACTACTGGAACACGCACCTCAAGAAGAAGCTCAAGAAGATGAGCGCCACCGGCGGCGGCGGCGACGACGGCGAGGGAGGTGGCGCCGGCGAGGTGAAGACCAGGGCGGCTGCGCCGAAGGGGCAGTGGGAGCGGCGCCTGCAGACGGACATCCACACCGCGCGCCAGGCGCTCCGCGACGCGCTCTCGCTGGACCCCTCGCCGCCGGCCAAGCCGCTGGACTCGTCGTCGGGCGCCACGGCGCCGCCGTCGTCGCAGGCGGCGACGTCGTACGCATCCAGCGCCGAGAACATCGCGCGGCTCCTGGAGGGCTGGATGCGCCCCGGCGGCGGCGGCGGCAAGACGACGACGACGCCGTCCTCCGGGTCGAGGTCGTCGGCGGCGTCGGTGCTGTCCGGGGAGGCCAGCCACAGCGGCGGCGCCACGGCGCCGACGCCCGACGGCTCGACGGTCACCAGCAAGACGAAGGACGAGGAGACCGCCGGCGCGCCGCCGCCGCCGCCGCCGCCGGCGTTCTCCATGCTGGAGAGCTGGCTGCTCGACGACGGCATGGGCCACGGCGAGGTGGGGCTCATGGACGTGGTGGTGCCATTGGGGGACCCGAGTGAGTTCTTTTAGTGCAAGTGAAAAAAGGAAAAAAAAATGAGGGGACAAAAAAAAGGTGACAATAAATGTGACTAGCCTTGAAGAACAAAGCCAATCAATCCTTGGTGATTTAGATCATCAAAAGCACAAAGCTGGTGTTGATCTAGCATAGTTAAATCTAGTTATATTCTCTCTTCTTCTTTTTGAGTTTTAATTCGTTGTTAGGGTTTGGAACTGATCATCTTAATTTGTAAGTTTCTATATAGTAGTCTATACTAATCCATGGTGGATGCATGACTTGGATCCATTGTGAGATGAGCCAGTCATGAAATGGAGGTTGGCAAACAATAGAAATGTACATCTTCTTTAATAACATAAATCTTATATATATATCAGTAGTACCAGTAAATGTTATAATATA
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| CDS seq | ATGGGGAGGCCGCCGTGCTGCGTGAAGGCGGAGGTGAAGAAGGGGCCGTGGACGCCGGAGGAGGACCTCATGCTCGTCGCCTACGTCCAGGAGCACGGCCCGGGCAACTGGCGCGCCGTGCCCACCAACACCGGGCTGATGCGGTGCAGCAAGAGCTGCCGGCTCCGGTGGACCAACTACCTCCGGCCGGGGATCAAGCGGGGGAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCCCTCCTCGGCAACAGGTGGGCGGCGATCGCGTCCTACTTGCCGGAGAGGACGGACAACGACATCAAGAACTACTGGAACACGCACCTCAAGAAGAAGCTCAAGAAGATGAGCGCCACCGGCGGCGGCGGCGACGACGGCGAGGGAGGTGGCGCCGGCGAGGTGAAGACCAGGGCGGCTGCGCCGAAGGGGCAGTGGGAGCGGCGCCTGCAGACGGACATCCACACCGCGCGCCAGGCGCTCCGCGACGCGCTCTCGCTGGACCCCTCGCCGCCGGCCAAGCCGCTGGACTCGTCGTCGGGCGCCACGGCGCCGCCGTCGTCGCAGGCGGCGACGTCGTACGCATCCAGCGCCGAGAACATCGCGCGGCTCCTGGAGGGCTGGATGCGCCCCGGCGGCGGCGGCGGCAAGACGACGACGACGCCGTCCTCCGGGTCGAGGTCGTCGGCGGCGTCGGTGCTGTCCGGGGAGGCCAGCCACAGCGGCGGCGCCACGGCGCCGACGCCCGACGGCTCGACGGTCACCAGCAAGACGAAGGACGAGGAGACCGCCGGCGCGCCGCCGCCGCCGCCGCCGCCGGCGTTCTCCATGCTGGAGAGCTGGCTGCTCGACGACGGCATGGGCCACGGCGAGGTGGGGCTCATGGACGTGGTGGTGCCATTGGGGGACCCGAGTGAGTTCTTTTAG
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| Protein seq | MGRPPCCVKAEVKKGPWTPEEDLMLVAYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDQEEKLIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKMSATGGGGDDGEGGGAGEVKTRAAAPKGQWERRLQTDIHTARQALRDALSLDPSPPAKPLDSSSGATAPPSSQAATSYASSAENIARLLEGWMRPGGGGGKTTTTPSSGSRSSAASVLSGEASHSGGATAPTPDGSTVTSKTKDEETAGAPPPPPPPAFSMLESWLLDDGMGHGEVGLMDVVVPLGDPSEFF |
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| Function | Myb-related protein 306 [UniProtKB/Swiss-Prot:P81392] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g33940 | LOC_Os08g33940.1 | Chr08 | 21240595 | 21242395 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGGAGGCCGCCGTGCTGCGTGAAGGCGGAGGTGAAGAAGGGGCCGTGGACGCCGGAGGAGGACCTCATGCTCGTCGCCTACGTCCAGGAGCACGGCCCGGGCAACTGGCGCGCCGTGCCCACCAACACCGGGCTGATGCGGTGCAGCAAGAGCTGCCGGCTCCGGTGGACCAACTACCTCCGGCCGGGGATCAAGCGGGGGAACTTCACCGACCAGGAGGAGAAGCTCATCGTCCACCTCCAGGCCCTCCTCGGCAACAGGTGGGCGGCGATCGCGTCCTACTTGCCGGAGAGGACGGACAACGACATCAAGAACTACTGGAACACGCACCTCAAGAAGAAGCTCAAGAAGATGAGCGCCACCGGCGGCGGCGGCGACGACGGCGAGGGAGGTGGCGCCGGCGAGGTGAAGACCAGGGCGGCTGCGCCGAAGGGGCAGTGGGAGCGGCGCCTGCAGACGGACATCCACACCGCGCGCCAGGCGCTCCGCGACGCGCTCTCGCTGGACCCCTCGCCGCCGGCCAAGCCGCTGGACTCGTCGTCGGGCGCCACGGCGCCGCCGTCGTCGCAGGCGGCGACGTCGTACGCATCCAGCGCCGAGAACATCGCGCGGCTCCTGGAGGGCTGGATGCGCCCCGGCGGCGGCGGCGGCAAGACGACGACGACGCCGTCCTCCGGGTCGAGGTCGTCGGCGGCGTCGGTGCTGTCCGGGGAGGCCAGCCACAGCGGCGGCGCCACGGCGCCGACGCCCGACGGCTCGACGGTCACCAGCAAGACGAAGGACGAGGAGACCGCCGGCGCGCCGCCGCCGCCGCCGCCGCCGGCGTTCTCCATGCTGGAGAGCTGGCTGCTCGACGACGGCATGGGCCACGGCGAGGTGGGGCTCATGGACGTGGTGGTGCCATTGGGGGACCCGAGTGAGTTCTTTTAG
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| Protein seq | MGRPPCCVKAEVKKGPWTPEEDLMLVAYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDQEEKLIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKKMSATGGGGDDGEGGGAGEVKTRAAAPKGQWERRLQTDIHTARQALRDALSLDPSPPAKPLDSSSGATAPPSSQAATSYASSAENIARLLEGWMRPGGGGGKTTTTPSSGSRSSAASVLSGEASHSGGATAPTPDGSTVTSKTKDEETAGAPPPPPPPAFSMLESWLLDDGMGHGEVGLMDVVVPLGDPSEFF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.045927 | 0.0 | 0.680479 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0437300 | RBH | 0.103888 | 0.0 | 2.862097 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g24800 | RBH | 0.0 | 0.104911 | 0.006360 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0437300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0017320 | RBH | 0.0 | 0.0 | 0.832555 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017200 | RBH | 0.083365 | 0.0 | 0.401045 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017150 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017290 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0337800 | RBH | 2.899317 | 0 | 1.6373005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017190 | RBH | 0.0 | 0.0 | 0.245335 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0358000 | RBH | 3.930249 | 0.059361 | 1.0568235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016560 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0016830 | RBH | 0.168267 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0017460 | RBH | 0.0 | 0.0 | 0.147865 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0016860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G017020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017120 | RBH | 0.0 | 0.0 | 0.000000 |
