Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g30470 | OGI:08055330 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:18752298-18753726 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAGCAATACGATCATTAAGTTCCAAAGGCAAAGGGTTGAGAGAGAGCAAGATACCACTTTCTTGAGCCAGCATTTTAAGCTTCTTGGAGCTCTTTGCCCTAGCCTTTCCCCTTGGCTTTCCCACACCCAAATTTGGGTCAGGGGACATAAATCCATCAGAAAGCTTGTTAATTCTTTCACTTCTCCGTATTTCTGAATCCAACAAAATCAACTTCCCAGTCCTCCTTTTGGGCCTTGGGGGTAGAGCAGGAGAGACATCTTGTTGGAATGGGTCCAGGAGAAGATTCAACACTGAAACTGTGTGTTGAGGATGGATAGCTTGAATCGGTTGGACTGAAATAACTTGTTGGCTGACCCAGTTTTCTTTGGCCCATATCAATGCAGAAGCTAGCATGGCAAATTGAAAAACATGATGGACAGGCAGCTGGTATGGGACTACATCAGATGACATGGGCTGAGGCCCAAGCAATCTTGGCCCACACAGGAGAGTCCTACAAATGCTGAGCAGTTTCCAAAACTGAGGGTAAACAATGAATGAAGGCACAACTTCCTCAGTCTGGCTGACCAGTGGCCCCATTGCAACATCCAAAGAAATAGTAGGTGCCACTTGATGGGCAGGGAAAATTTGCCATTCCCCTGAGTCCTGCTGGGAGACAGCACTGACATTGTGAGAAAGTTCTTCCTAGATCTGTGCATTCACTTCATCATTCTCACCTATGTCTTCATCTGCATTTCCCCAAACATTAGCTTGTTGAGGAACAGGAGATGGTTCTGGCAAGGGAATGTGGTTCACAAGTGGCAGATCCTCATCTGCAGGCTGGACATCTGCAAAGTCCCCATTAAGCACAAACACAGAAACTGTCTAGGAGCGGCCAACACCTCCAAAGCTTGAGTACTTCTTAATCACCACCTTAGAGAGGGACCTCCTCAACCATGGAGTAAATGACCTTCGCAAGAACCCTGCCTCTGAACCTTGGTCCACTGGACCAACAAAGCAACCAACCAAAAGTACCAACTGGTTTGTCCACAATTCTGTCGGTTTGTAGGTCTAGAGGGAAATCTAAGAACATCACCCAACCCTCTCTAATTGGAGGGGAATTGTGGCAAGTGGAGGTGTTATCATGGTTGACAAATCTTAGGGTAATCTGTTCATTGACATCATATGGCCCTCCCAATACTAGAGCATCTCTAAGCACAGCCGAGGCAATGTGAATAAAAGCAAACTCAGATGCATGCCTACTGGTGTCCAACACATGATAACCCAGAGTGTTTTGAACGTAGTAAACCACAAGGACAAAATGCTCTTGCTTCTTGGGAGGGGGTTCAAGAATGGCAACTGCGATACCTTCATGCTTCTTGGGAGGTTCATCCATGATGATCAAATCTGCACGAGGGAGACAGTGAAGCCAAGCATCATTGATCGCCAT
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| CDS seq | ATGGCGATCAATGATGCTTGGCTTCACTGTCTCCCTCGTGCAGATTTGATCATCATGGATGAACCTCCCAAGAAGCATGAAGGTATCGCAGTTGCCATTCTTGAACCCCCTCCCAAGAAGCAAGAGCATTTTGTCCTTGTGGTTTACTACGTTCAAAACACTCTGGGTTATCATGTGTTGGACACCAGTAGGCATGCATCTGAGTTTGCTTTTATTCACATTGCCTCGGCTGTGCTTAGAGATGCTCTAGTATTGGGAGGGCCATATGATGTCAATGAACAGATTACCCTAAGATTTGTCAACCATGATAACACCTCCACTTGCCACAATTCCCCTCCAATTAGAGAGGGTTGGGTGATGTTCTTAGATTTCCCTCTAGACCTACAAACCGACAGAATTGTGGACAAACCAGTTGTGGACCAAGGTTCAGAGGCAGGGTTCTTGCGAAGGTCATTTACTCCATGGTTGAGGAGGTCCCTCTCTAAGGTGGTGATTAAGAAGTACTCAAGCTTTGGAGATGTCCAGCCTGCAGATGAGGATCTGCCACTTGTGAACCACATTCCCTTGCCAGAACCATCTCCTGTTCCTCAACAAGCTAATGTTTGGGGAAATGCAGATGAAGACATAGGTGAGAATGATGAAGACTCAGGGGAATGGCAAATTTTCCCTGCCCATCAAGTGGCACCTACTATTTCTTTGGATGTTGCAATGGGGCCACTGGTCAGCCAGACTGAGGAAGTTGTGCCTTCATTCATTGTTTACCCTCAGTTTTGGAAACTGCTCAGCATTTGTAGGACTCTCCTGTGTGGGCCAAGATTGCTTGGGCCTCAGCCCATGTCATCTGATGTAGTCCCATACCAGCTGCCTGTCCATCATGTTTTTCAATTTGCCATGCTAGCTTCTGCATTGATATGGGCCAAAGAAAACTGGGTCAGCCAACAAGTTATTTCAGTCCAACCGATTCAAGCTATCCATCCTCAACACACAGTTTCAGTGTTGAATCTTCTCCTGGACCCATTCCAACAAGATGTCTCTCCTGCTCTACCCCCAAGGCCCAAAAGGAGGACTGGGAAGTTGATTTTGTTGGATTCAGAAATACGGAGAAGTGAAAGAATTAACAAGCTTTCTGATGGATTTATGTCCCCTGACCCAAATTTGGGTGTGGGAAAGCCAAGGGGAAAGGCTAGGGCAAAGAGCTCCAAGAAGCTTAAAATGCTGGCTCAAGAAAGTGGTATCTTGCTCTCTCTCAACCCTTTGCCTTTGGAACTTAATGATCGTATTGCTTAA
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| Protein seq | MAINDAWLHCLPRADLIIMDEPPKKHEGIAVAILEPPPKKQEHFVLVVYYVQNTLGYHVLDTSRHASEFAFIHIASAVLRDALVLGGPYDVNEQITLRFVNHDNTSTCHNSPPIREGWVMFLDFPLDLQTDRIVDKPVVDQGSEAGFLRRSFTPWLRRSLSKVVIKKYSSFGDVQPADEDLPLVNHIPLPEPSPVPQQANVWGNADEDIGENDEDSGEWQIFPAHQVAPTISLDVAMGPLVSQTEEVVPSFIVYPQFWKLLSICRTLLCGPRLLGPQPMSSDVVPYQLPVHHVFQFAMLASALIWAKENWVSQQVISVQPIQAIHPQHTVSVLNLLLDPFQQDVSPALPPRPKRRTGKLILLDSEIRRSERINKLSDGFMSPDPNLGVGKPRGKARAKSSKKLKMLAQESGILLSLNPLPLELNDRIA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g30470 | LOC_Os08g30470.1 | Chr08 | 18752298 | 18753726 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGATCAATGATGCTTGGCTTCACTGTCTCCCTCGTGCAGATTTGATCATCATGGATGAACCTCCCAAGAAGCATGAAGGTATCGCAGTTGCCATTCTTGAACCCCCTCCCAAGAAGCAAGAGCATTTTGTCCTTGTGGTTTACTACGTTCAAAACACTCTGGGTTATCATGTGTTGGACACCAGTAGGCATGCATCTGAGTTTGCTTTTATTCACATTGCCTCGGCTGTGCTTAGAGATGCTCTAGTATTGGGAGGGCCATATGATGTCAATGAACAGATTACCCTAAGATTTGTCAACCATGATAACACCTCCACTTGCCACAATTCCCCTCCAATTAGAGAGGGTTGGGTGATGTTCTTAGATTTCCCTCTAGACCTACAAACCGACAGAATTGTGGACAAACCAGTTGTGGACCAAGGTTCAGAGGCAGGGTTCTTGCGAAGGTCATTTACTCCATGGTTGAGGAGGTCCCTCTCTAAGGTGGTGATTAAGAAGTACTCAAGCTTTGGAGATGTCCAGCCTGCAGATGAGGATCTGCCACTTGTGAACCACATTCCCTTGCCAGAACCATCTCCTGTTCCTCAACAAGCTAATGTTTGGGGAAATGCAGATGAAGACATAGGTGAGAATGATGAAGACTCAGGGGAATGGCAAATTTTCCCTGCCCATCAAGTGGCACCTACTATTTCTTTGGATGTTGCAATGGGGCCACTGGTCAGCCAGACTGAGGAAGTTGTGCCTTCATTCATTGTTTACCCTCAGTTTTGGAAACTGCTCAGCATTTGTAGGACTCTCCTGTGTGGGCCAAGATTGCTTGGGCCTCAGCCCATGTCATCTGATGTAGTCCCATACCAGCTGCCTGTCCATCATGTTTTTCAATTTGCCATGCTAGCTTCTGCATTGATATGGGCCAAAGAAAACTGGGTCAGCCAACAAGTTATTTCAGTCCAACCGATTCAAGCTATCCATCCTCAACACACAGTTTCAGTGTTGAATCTTCTCCTGGACCCATTCCAACAAGATGTCTCTCCTGCTCTACCCCCAAGGCCCAAAAGGAGGACTGGGAAGTTGATTTTGTTGGATTCAGAAATACGGAGAAGTGAAAGAATTAACAAGCTTTCTGATGGATTTATGTCCCCTGACCCAAATTTGGGTGTGGGAAAGCCAAGGGGAAAGGCTAGGGCAAAGAGCTCCAAGAAGCTTAAAATGCTGGCTCAAGAAAGTGGTATCTTGCTCTCTCTCAACCCTTTGCCTTTGGAACTTAATGATCGTATTGCTTAA
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| Protein seq | MAINDAWLHCLPRADLIIMDEPPKKHEGIAVAILEPPPKKQEHFVLVVYYVQNTLGYHVLDTSRHASEFAFIHIASAVLRDALVLGGPYDVNEQITLRFVNHDNTSTCHNSPPIREGWVMFLDFPLDLQTDRIVDKPVVDQGSEAGFLRRSFTPWLRRSLSKVVIKKYSSFGDVQPADEDLPLVNHIPLPEPSPVPQQANVWGNADEDIGENDEDSGEWQIFPAHQVAPTISLDVAMGPLVSQTEEVVPSFIVYPQFWKLLSICRTLLCGPRLLGPQPMSSDVVPYQLPVHHVFQFAMLASALIWAKENWVSQQVISVQPIQAIHPQHTVSVLNLLLDPFQQDVSPALPPRPKRRTGKLILLDSEIRRSERINKLSDGFMSPDPNLGVGKPRGKARAKSSKKLKMLAQESGILLSLNPLPLELNDRIA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014810 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015050 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014830 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0297800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014850 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0319700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014410 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014480 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0045220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014510 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014580 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014710 | RBH | 0.0 | 0.0 | 0.0 |
