Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g27810 | OGI:08050310 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:16939596-16941786 | ||||||||
| Gene Symbol | WAK78, OsWAK78 | ||||||||||
| DNA seq | CTAAGCTGCTGGCTTATCTGTCACTGCTTTCTCCAAACTCAAATTATTACGACTAGTGTAGAAGGTGATATTTCCTAATATTACGAATCCGAACAAGTAATATCATCTTGTCCTAATATTTTGGGACAGAGGTATCATATATTGGTACAACAGATATGGATCCTCTGCTGTAACGTCAGTGTCAGGTGATTTTCGGTTCAGTGACATAGTGATATAAAGTCAAGATTATTTGTTGTTAAGGTGAAGAATCCCGTTTTGTAGGAGAATTTTTTTATTTTTTTAGACTTTTTATTTTTTAATTTTATTAATATACCGTTCTTAAAAAATATTTCAAAAACTAAACCTTTTGGCGTTGAAGCGTTGTTTTGCCACGCCAGCCATGGTAGCGTGGCAAGAGGCTAGTGTGGCAGGACAGCACTGCCGCGCCAGCTGTGCGTGACGTGACAAAGTTATTTGGCCACAGGCTGGCGTAGTCAAAATTCATATTTAAAAATACTTTTTGGAAAGGTATATAAAAAATATATAAAATATATAAAAAAAATCTTTCGTAGGTACCTGTGACCGTCTTGAGTGCTAGAGTGAACTTGTCGTCGCGGCGGCAGCCACCCTCCACGCTGGCATTTCCACTGGATCCCTTGGGGCAAGAGCAAGCGTAGCTGCCTGCCGTATTGGTGCAGACGCCGTAGCAGGGGTACTCATCTTTGTGCTCGCACTCGTTGATGTCTTAATAATTTGTTTCAATTTAAATCCACAAATAACATGAGAAGTAATTAATTAAAGGCCAGAAAAACATCACCATCAGGATGAACTGAAGTGGGATGATGATGAGAGGGAGAGAAGTACCTCTCTCCATTTCAGATTATAAGTCGTTTTGATTTTAGTAAAAGTCAAACTGTTATTTAAAGTTTGATCAAGTTAGTAAAAAAGATAACAATATTTTTAGCCAAGACAAATATATTATAAAAATATATTTAATTATTGATTTAATAAAATTAATTTGATGTTGTAAATATTAAAATTTGTCTACAAACTTAATAAAAAACGATTTATATTCTAAAACGGAGGAGTAACCAAAAATTAGATTTAGACCTGTGCAGTCGCCGACGACGTACGGGTTGCCGTGGTACCCGGCGGTGCAGTTGCAGATATACCCAGGGCCGTTGCTGGAGTCGATGCAGACGCTGTGCGCGCTCCGGCAGGCGTACGACGGCAGCGGCGTGCGGCTTGCGGCGGCGCAGCTCCCGCTCCCGCTCCCGCTCCCGGCGTCCGGCCGGATGGCCCAGTCCAGCACGACGGGCACGGCGAAGTCGCCCGTCCGGTTGAAGTTTGAGCCGGCGTACCAGAACCACCATGCGTCCACCATGAAAGCGTAGGCGCAGGCGGTGGCGTTGGCAAGGAAGGCGCCGCCCTGGCGGCGGCCGAAGCTGCGGAGGCGCGGCCGGTAGGAGGCGAGCCCGAGCGGGATGTTGCTCTGGCAGCAGCCGTCGTCGCCCCGGCACGAGCCCGGCAGCGCCCGCGCCGACGGCCGGCACACGGACATGCAGCCGGTGACGTAGTCCCCGCCGTCGTCGACGAAGTAGGCGAGGCCGGGGCAGCCGATGGCGACGAACTTGCTCTTCATGGACGAGAAGAGGAACGCGCTGCCGTTGAGGGACATGGGCTGCTCCTCCCGCCCCCGGCGGCCGCGCCCGTAGTCGCCGCCGCCGTAGCACGCGCGGCTGGCGTTGAGCAGCACGGTGACCTCGGCGGCGGCGAGGGAGATGGAGGTCACCTCGTGGCCGTAGCCGGCAACTGTGAGGCGCGGCGGGCGTCGGGCGTCGTCGCAGTCGAGGCGAAACCCCCGCACGCCGCCGCGGTAGCAGCGCTCGGAGCCGATGCCGAAGGGGTAGGGGACGGTCACGTTGCCGCACCGCCGCCGGCATCCCGGCGCCTCCTCCTGCTGCGCCAGCGCCGCTGCTGGAGTGATCAGCGCCAGCCATACAAGTGCCCTCCAAACTAAAAACACCTCCATTACTCTCGTTGCGCCTTCTCTCTCTCGCTGCGTGTGATTACGGCTGCCTTCATAATTGAGAGCTCGTGGTTGCTGGATCGCCATAACTGATCGATCAGCTAGCAGCATAGCTACACCGATTGGCGAATGGCGATGGACGAGGTCAACAGAGACCTGGCATGGCATGGCAAATCGATCCAT
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| CDS seq | ATGGATCGATTTGCCATGCCATGCCAGGTCTCTGTTGACCTCGTCCATCGCCATTCGCCAATCGGTGTAGCTATGCTGCTAGCTGATCGATCAGTTATGGCGATCCAGCAACCACGAGCTCTCAATTATGAAGGCAGCCGTAATCACACGCAGCGAGAGAGAGAAGGCGCAACGAGAGTAATGGAGGTGTTTTTAGTTTGGAGGGCACTTGTATGGCTGGCGCTGATCACTCCAGCAGCGGCGCTGGCGCAGCAGGAGGAGGCGCCGGGATGCCGGCGGCGGTGCGGCAACGTGACCGTCCCCTACCCCTTCGGCATCGGCTCCGAGCGCTGCTACCGCGGCGGCGTGCGGGGGTTTCGCCTCGACTGCGACGACGCCCGACGCCCGCCGCGCCTCACAGTTGCCGGCTACGGCCACGAGGTGACCTCCATCTCCCTCGCCGCCGCCGAGGTCACCGTGCTGCTCAACGCCAGCCGCGCGTGCTACGGCGGCGGCGACTACGGGCGCGGCCGCCGGGGGCGGGAGGAGCAGCCCATGTCCCTCAACGGCAGCGCGTTCCTCTTCTCGTCCATGAAGAGCAAGTTCGTCGCCATCGGCTGCCCCGGCCTCGCCTACTTCGTCGACGACGGCGGGGACTACGTCACCGGCTGCATAGCAACATCCCGCTCGGGCTCGCCTCCTACCGGCCGCGCCTCCGCAGCTTCGGCCGCCGCCAGGGCGGCGCCTTCCTTGCCAACGCCACCGCCTGCGCCTACGCTTTCATGGTGGACGCATGGTGGTTCTGGTACGCCGGCTCAAACTTCAACCGGACGGGCGACTTCGCCGTGCCCGTCGTGCTGGACTGGGCCATCCGGCCGGACGCCGGGAGCGGGAGCGGGAGCGGGAGCTGCGCCGCCGCAAGCCGCACGCCGCTGCCGTCGTACGCCTGCCGGAGCGCGCACAGCGTCTGCATCGACTCCAGCAACGGCCCTGGGTATATCTGCAACTGCACCGCCGGGTACCACGGCAACCCGTACGTCGTCGGCGACTGCACAGACATCAACGAGTGCGAGCACAAAGATGAGTACCCCTGCTACGGCGTCTGCACCAATACGGCAGGCAGCTACGCTTGCTCTTGCCCCAAGGGATCCAGTGGAAATGCCAGCGTGGAGGGTGGCTGCCGCCGCGACGACAAGTTCACTCTAG
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| Protein seq | MDRFAMPCQVSVDLVHRHSPIGVAMLLADRSVMAIQQPRALNYEGSRNHTQREREGATRVMEVFLVWRALVWLALITPAAALAQQEEAPGCRRRCGNVTVPYPFGIGSERCYRGGVRGFRLDCDDARRPPRLTVAGYGHEVTSISLAAAEVTVLLNASRACYGGGDYGRGRRGREEQPMSLNGSAFLFSSMKSKFVAIGCPGLAYFVDDGGDYVTGCIATSRSGSPPTGRASAASAAARAAPSLPTPPPAPTLSWWTHGGSGTPAQTSTGRATSPCPSCWTGPSGRTPGAGAGAGAAPPQAARRCRRTPAGARTASASTPATALGISATAPPGTTATRTSSATAQTSTSASTKMSTPATASAPIRQAATLALAPRDPVEMPAWRVAAAATTSSL |
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| Function | Wall-associated receptor kinase 1 [UniProtKB/Swiss-Prot:Q39191] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g27810 | LOC_Os08g27810.1 | Chr08 | 16939596 | 16941786 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATCGATTTGCCATGCCATGCCAGGTCTCTGTTGACCTCGTCCATCGCCATTCGCCAATCGGTGTAGCTATGCTGCTAGCTGATCGATCAGTTATGGCGATCCAGCAACCACGAGCTCTCAATTATGAAGGCAGCCGTAATCACACGCAGCGAGAGAGAGAAGGCGCAACGAGAGTAATGGAGGTGTTTTTAGTTTGGAGGGCACTTGTATGGCTGGCGCTGATCACTCCAGCAGCGGCGCTGGCGCAGCAGGAGGAGGCGCCGGGATGCCGGCGGCGGTGCGGCAACGTGACCGTCCCCTACCCCTTCGGCATCGGCTCCGAGCGCTGCTACCGCGGCGGCGTGCGGGGGTTTCGCCTCGACTGCGACGACGCCCGACGCCCGCCGCGCCTCACAGTTGCCGGCTACGGCCACGAGGTGACCTCCATCTCCCTCGCCGCCGCCGAGGTCACCGTGCTGCTCAACGCCAGCCGCGCGTGCTACGGCGGCGGCGACTACGGGCGCGGCCGCCGGGGGCGGGAGGAGCAGCCCATGTCCCTCAACGGCAGCGCGTTCCTCTTCTCGTCCATGAAGAGCAAGTTCGTCGCCATCGGCTGCCCCGGCCTCGCCTACTTCGTCGACGACGGCGGGGACTACGTCACCGGCTGCATAGCAACATCCCGCTCGGGCTCGCCTCCTACCGGCCGCGCCTCCGCAGCTTCGGCCGCCGCCAGGGCGGCGCCTTCCTTGCCAACGCCACCGCCTGCGCCTACGCTTTCATGGTGGACGCATGGTGGTTCTGGTACGCCGGCTCAAACTTCAACCGGACGGGCGACTTCGCCGTGCCCGTCGTGCTGGACTGGGCCATCCGGCCGGACGCCGGGAGCGGGAGCGGGAGCGGGAGCTGCGCCGCCGCAAGCCGCACGCCGCTGCCGTCGTACGCCTGCCGGAGCGCGCACAGCGTCTGCATCGACTCCAGCAACGGCCCTGGGTATATCTGCAACTGCACCGCCGGGTACCACGGCAACCCGTACGTCGTCGGCGACTGCACAGACATCAACGAGTGCGAGCACAAAGATGAGTACCCCTGCTACGGCGTCTGCACCAATACGGCAGGCAGCTACGCTTGCTCTTGCCCCAAGGGATCCAGTGGAAATGCCAGCGTGGAGGGTGGCTGCCGCCGCGACGACAAGTTCACTCTAG
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| Protein seq | MDRFAMPCQVSVDLVHRHSPIGVAMLLADRSVMAIQQPRALNYEGSRNHTQREREGATRVMEVFLVWRALVWLALITPAAALAQQEEAPGCRRRCGNVTVPYPFGIGSERCYRGGVRGFRLDCDDARRPPRLTVAGYGHEVTSISLAAAEVTVLLNASRACYGGGDYGRGRRGREEQPMSLNGSAFLFSSMKSKFVAIGCPGLAYFVDDGGDYVTGCIATSRSGSPPTGRASAASAAARAAPSLPTPPPAPTLSWWTHGGSGTPAQTSTGRATSPCPSCWTGPSGRTPGAGAGAGAAPPQAARRCRRTPAGARTASASTPATALGISATAPPGTTATRTSSATAQTSTSASTKMSTPATASAPIRQAATLALAPRDPVEMPAWRVAAAATTSSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.093466 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0365800 | RBH | 0.000000 | 0.669710 | 0.605154 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0365800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013560 | SBH | 0.0 | 0.0 | 0.967399 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013610 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013470 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013760 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013760 | RBH | 1.896440 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0269200 | RBH | 0.0272385 | 0.1162455 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013800 | RBH | 0.0 | 0.0 | 0.223270 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0287500 | RBH | 0.5138195 | 0.028782 | 1.1841905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013070 | SBH | 0.038052 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013190 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013110 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0044400 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013190 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013310 | RBH | 0.0 | 0.0 | 0.129622 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013350 | SBH | 0.0 | 0.0 | 0.361986 |
