Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g25050 | OGI:08043560 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:15199729-15201818 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCTATATGAAATGACTAGCCGACTGATACAAATTTATATGATAAAGTAGCAAAGCAAATAAGGTCATAATGCATAACATAAGAGTATGCCAAGGTCAAACAACCGATTACATAATGCCACGTCGTGTTGGCGATGGGTATATACAATCAAACACCGTGTGCGACAACTAAGCATGGACTGGTATCACTTTTTCCTAGCATTGTCCCAAGTCCATCGGAGCCATGCTTTACGATTCTCTGCAGGGTAAATACACCTAAAAGCTGCCCATCGTGCAGCTGACCTAAATAGGTCAGTAGCTATGAAATACAACTCAGATCCTTGAGCCACACCATCCTCTTCTACAAGTTGCAGCAATTCTTTTATCTCATCTTGCTCTCCCCTGAGCACACTGCTTTCATTCCTGCTTCTTTCGAGCATACTCTCTGATACGCACCCTACATAGTACTCCATATTTTTACTCTTCTTGGGTGGTGGGCGGTCAACCACCTGCTCCTTCCCTGCCCTTTAAGCCACACGGCCAGCACTAGACAAGCCGACATTGTCGTTAGACATCGGAGTAAGGTTGTCATCGCTTCCACTGCTTGGTGTTCTCTTGCCAATACCACCTACGCACAACATTGTACCTTCTTCGGTGTCCATGCAACCAAAATGAGTAGTCAGCTCATCCTCATGTTCAAGCGGCTTTCCACGGAACTGTCTGGCATCCCTATTCTCCTACAAGTCAGATATGGACAATGTAAGTTTGACGAGACAATAACAAAAACTCAATATTAGTTTTGTAGTAAAATCAATATTCACATGTAGTTACCTCAATACGGTCTTCCCACCAATCATCATCGCACCTTATGGTGCTAGAATTGTTGTCCCACCCACCTCCGCTCTTATTCTTTAGGCTCTTCCATAGCTTGTATTGTCTCTTAAAGGTGCTAAATTTGTTTTGAAGCTGTTTACTGTCATAGTTCTTGCCTGATTGTTCTCTGAAATTGCGATATAAATTCTGCCAACCTATGTTGGTACGACCCTTCTTGTTGTGATTGCGCTTTGTCTTCTCAGCAATGCATAAGTCGAGGAATATCTTTGTGAGGGCTTTGTCCCAATAGGTGCGACCACCAGCCATCTATGTGTAATTTTGCATTACATGTAGTCCAACTTAGGAGTTTTTGAGATCTTAAACACAGTACTAACATCAAGTTGCAGGTATGCAAAACATTTTTCGCACTGATAACTAATATGAGAAAGCAATGCTTGCCTTGAGTTAGTTCTGCCGTGCAGGAGTTGTACGCAGATTGTATCATGCGGCTTCAGGTGGAGACCATGACGATGTCGACCGGCGGAGGGAAATCGTTTGTTCAGATTGAGGATTCCTACGTACAAGTCGCTCTTGTGACCTTACAAGTGCCAACCGCTCCGTGGTGCCATATCGTCTCAGGTTATGTGCCAGCGCTTCTGGTTGCGGTCCTACAAATGTCCAAGAATCAAATCAGCAGTTCGTATGCCTGCACAAGGTGCCCTTCGGCCGAGTTGACATGGCGAATGGTGCCATACACAAATACCCCTAAAAATGCAAGATCAAAAATCACAAAAGGGAGATGATTCTTACCTCCTAACTGCCGGACCTGGACGGATCTGGGGGAGAAGACGTCGCCAGCGACACAGCGTGGGTCTTGCCCGACGGGATGTTTCCCTTGGCTGCACTCTATCCCCTCAACAACCACACCCTAATGAGGTTAACTCCAGCCGACTGTCGAGCTTCCCCTCCCCTCAACCCCCACAGCTGAATCAAGATGAACTTCACATCCTATTGGATTTAATCGATCATATCGGGAGTGGTGAGAGGAAAAAAGGAAGGGGATGGGAAGGGGTGGCGTCGGGCGCGACCGGAAGGCACGGCACGGCTCGGAGGGATGAGGATGGGAGAGAACGTGGAGGAGATCGGGAAGGCACGGCGTGGCTCGGCAGGAGGAGGACGGGAGAGAAGGCGGAGGGGATCGAGACGCGCTCGGCAGAGTGTGGGCCGTGGCGATGGAAGAGAAGGCGCGATAGGGTGGAGTGTGGGCTACGCGATAGGACTGGGAGATGGGAACTAGAAG
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| CDS seq | ATGGCTGGTGGTCGCACCTATTGGGACAAAGCCCTCACAAAGATATTCCTCGACTTATGCATTGCTGAGAAGACAAAGCGCAATCACAACAAGAAGGGTCGTACCAACATAGGTTGGCAGAATTTATATCGCAATTTCAGAGAACAATCAGGCAAGAACTATGACAGTAAACAGCTTCAAAACAAATTTAGCACCTTTAAGAGACAATACAAGCTATGGAAGAGCCTAAAGAATAAGAGCGGAGGTGGGTGGGACAACAATTCTAGCACCATAAGGTGCGATGATGATTGGTGGGAAGACCGTATTGAGGAGAATAGGGATGCCAGACAGTTCCGTGGAAAGCCGCTTGAACATGAGGATGAGCTGACTACTCATTTTGGTTGCATGGACACCGAAGAAGGTACAATGTTGTGCGTAGGTGGTATTGGCAAGAGAACACCAAGCAGTGGAAGCGATGACAACCTTACTCCGATGTCTAACGACAATGTCGGCTTGTCTAGTGCTGGCCGTGTGGCTTAA
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| Protein seq | MAGGRTYWDKALTKIFLDLCIAEKTKRNHNKKGRTNIGWQNLYRNFREQSGKNYDSKQLQNKFSTFKRQYKLWKSLKNKSGGGWDNNSSTIRCDDDWWEDRIEENRDARQFRGKPLEHEDELTTHFGCMDTEEGTMLCVGGIGKRTPSSGSDDNLTPMSNDNVGLSSAGRVA |
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| Function | L10-interacting MYB domain-containing protein [UniProtKB/Swiss-Prot:Q9FFJ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g25050 | LOC_Os08g25050.1 | Chr08 | 15199729 | 15201818 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTGGTGGTCGCACCTATTGGGACAAAGCCCTCACAAAGATATTCCTCGACTTATGCATTGCTGAGAAGACAAAGCGCAATCACAACAAGAAGGGTCGTACCAACATAGGTTGGCAGAATTTATATCGCAATTTCAGAGAACAATCAGGCAAGAACTATGACAGTAAACAGCTTCAAAACAAATTTAGCACCTTTAAGAGACAATACAAGCTATGGAAGAGCCTAAAGAATAAGAGCGGAGGTGGGTGGGACAACAATTCTAGCACCATAAGGTGCGATGATGATTGGTGGGAAGACCGTATTGAGGAGAATAGGGATGCCAGACAGTTCCGTGGAAAGCCGCTTGAACATGAGGATGAGCTGACTACTCATTTTGGTTGCATGGACACCGAAGAAGGTACAATGTTGTGCGTAGGTGGTATTGGCAAGAGAACACCAAGCAGTGGAAGCGATGACAACCTTACTCCGATGTCTAACGACAATGTCGGCTTGTCTAGTGCTGGCCGTGTGGCTTAA
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| Protein seq | MAGGRTYWDKALTKIFLDLCIAEKTKRNHNKKGRTNIGWQNLYRNFREQSGKNYDSKQLQNKFSTFKRQYKLWKSLKNKSGGGWDNNSSTIRCDDDWWEDRIEENRDARQFRGKPLEHEDELTTHFGCMDTEEGTMLCVGGIGKRTPSSGSDDNLTPMSNDNVGLSSAGRVA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.441726 | 2.004095 | 1.782571 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0338000 | RBH | 3.832934 | 2.932687 | 7.151520 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g05570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0338000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0012140 | RBH | 0.679531 | 1.706095 | 4.319671 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012260 | RBH | 0.000000 | 1.276446 | 0.753606 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012320 | RBH | 0.748972 | 9.900125 | 2.488714 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0012210 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012060 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0234300 | RBH | 0 | 0.349305 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012150 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0247900 | RBH | 0 | 0.072759 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011640 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011830 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012490 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011730 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011910 | RBH | 1.053535 | 1.933427 | 2.246658 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011860 | RBH | 0.0 | 0.0 | 0.0 |
