Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g24670 | OGI:08042920 | 7/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:14909182-14909967 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTAAAATATGCTGATGAAAAGCCACATACCTGTACTTGAGTTGAAGGACCAAGAGAGGAGCTGGTGCGACTCGACAAGTTCCCCGGTGGCCGCCGAGAATCCCACGGCCGCGTCCTGCGGCAAGCCGGCGGCTCTCAGGTCCACCGCCGCCTCCACGCCGTAGTTCGACCCGTTGGCCGTCAGGTTGACGACCATCTTCCTCGCGGCGGCGTCGTACCTGATCTCCGCCCGCATGACGCCGGCGAGGGTCAAGGTCGGCAGAGCGGTGAAGTTCTGGGACACAATCTGGTTGACGTCGACGCCGATGTGGTCGATGACGCCGTCCTGTGGATCCCAGGGGTTCCTGCAGGTGTCGAACTCTACGCCGACGGTGCGCGGCGAGGCTTCGCCGGTGTTGGGGATGAGGCCGAGGAACCCTCCGGTCATGTCCGGCGCGAGCGTGTCCGCCGGTGGCCCGACGTAGAACGCCATGCCGTCCGCCTGGTTCGTGGAGTTGCGGCCGATGGCGAAGGAGAAGGCGGTGGTGAAGCTGGTGACCGACCCGCCGGCGCCGTCGTCCCAGAGCCGCACGAGCTGCCGGTGCGCCACGCGCCCGGTGCTCCACGTGCCCAGCCTCGTGAGGTTGATCCGGTCGCCGGCGTAGGAGGCGTTGCCCATGAACACGAGGTTTGCGGCGGCGACGTCCCGCCCCACGGCTGCGAAGTCGTAGTCGAAGGAGAGCGCCGCCGCGGCGCGGAGGGTGGTGCAGCAGAGGAAGAGGTGGAGGAGGACATGGCTGGCCAT
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| CDS seq | ATGGCCAGCCATGTCCTCCTCCACCTCTTCCTCTGCTGCACCACCCTCCGCGCCGCGGCGGCGCTCTCCTTCGACTACGACTTCGCAGCCGTGGGGCGGGACGTCGCCGCCGCAAACCTCGTGTTCATGGGCAACGCCTCCTACGCCGGCGACCGGATCAACCTCACGAGGCTGGGCACGTGGAGCACCGGGCGCGTGGCGCACCGGCAGCTCGTGCGGCTCTGGGACGACGGCGCCGGCGGGTCGGTCACCAGCTTCACCACCGCCTTCTCCTTCGCCATCGGCCGCAACTCCACGAACCAGGCGGACGGCATGGCGTTCTACGTCGGGCCACCGGCGGACACGCTCGCGCCGGACATGACCGGAGGGTTCCTCGGCCTCATCCCCAACACCGGCGAAGCCTCGCCGCGCACCGTCGGCGTAGAGTTCGACACCTGCAGGAACCCCTGGGATCCACAGGACGGCGTCATCGACCACATCGGCGTCGACGTCAACCAGATTGTGTCCCAGAACTTCACCGCTCTGCCGACCTTGACCCTCGCCGGCGTCATGCGGGCGGAGATCAGGTACGACGCCGCCGCGAGGAAGATGGTCGTCAACCTGACGGCCAACGGGTCGAACTACGGCGTGGAGGCGGCGGTGGACCTGAGAGCCGCCGGCTTGCCGCAGGACGCGGCCGTGGGATTCTCGGCGGCCACCGGGGAACTTGTCGAGTCGCACCAGCTCCTCTCTTGGTCCTTCAACTCAAGTACAGGTATGTGGCTTTTCATCAGCATATTTTACTAG
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| Protein seq | MASHVLLHLFLCCTTLRAAAALSFDYDFAAVGRDVAAANLVFMGNASYAGDRINLTRLGTWSTGRVAHRQLVRLWDDGAGGSVTSFTTAFSFAIGRNSTNQADGMAFYVGPPADTLAPDMTGGFLGLIPNTGEASPRTVGVEFDTCRNPWDPQDGVIDHIGVDVNQIVSQNFTALPTLTLAGVMRAEIRYDAAARKMVVNLTANGSNYGVEAAVDLRAAGLPQDAAVGFSAATGELVESHQLLSWSFNSSTGMWLFISIFY |
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| Function | Agglutinin-2 [UniProtKB/Swiss-Prot:Q39529] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g24670 | LOC_Os08g24670.1 | Chr08 | 14909182 | 14909967 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCAGCCATGTCCTCCTCCACCTCTTCCTCTGCTGCACCACCCTCCGCGCCGCGGCGGCGCTCTCCTTCGACTACGACTTCGCAGCCGTGGGGCGGGACGTCGCCGCCGCAAACCTCGTGTTCATGGGCAACGCCTCCTACGCCGGCGACCGGATCAACCTCACGAGGCTGGGCACGTGGAGCACCGGGCGCGTGGCGCACCGGCAGCTCGTGCGGCTCTGGGACGACGGCGCCGGCGGGTCGGTCACCAGCTTCACCACCGCCTTCTCCTTCGCCATCGGCCGCAACTCCACGAACCAGGCGGACGGCATGGCGTTCTACGTCGGGCCACCGGCGGACACGCTCGCGCCGGACATGACCGGAGGGTTCCTCGGCCTCATCCCCAACACCGGCGAAGCCTCGCCGCGCACCGTCGGCGTAGAGTTCGACACCTGCAGGAACCCCTGGGATCCACAGGACGGCGTCATCGACCACATCGGCGTCGACGTCAACCAGATTGTGTCCCAGAACTTCACCGCTCTGCCGACCTTGACCCTCGCCGGCGTCATGCGGGCGGAGATCAGGTACGACGCCGCCGCGAGGAAGATGGTCGTCAACCTGACGGCCAACGGGTCGAACTACGGCGTGGAGGCGGCGGTGGACCTGAGAGCCGCCGGCTTGCCGCAGGACGCGGCCGTGGGATTCTCGGCGGCCACCGGGGAACTTGTCGAGTCGCACCAGCTCCTCTCTTGGTCCTTCAACTCAAGTACAGGTATGTGGCTTTTCATCAGCATATTTTACTAG
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| Protein seq | MASHVLLHLFLCCTTLRAAAALSFDYDFAAVGRDVAAANLVFMGNASYAGDRINLTRLGTWSTGRVAHRQLVRLWDDGAGGSVTSFTTAFSFAIGRNSTNQADGMAFYVGPPADTLAPDMTGGFLGLIPNTGEASPRTVGVEFDTCRNPWDPQDGVIDHIGVDVNQIVSQNFTALPTLTLAGVMRAEIRYDAAARKMVVNLTANGSNYGVEAAVDLRAAGLPQDAAVGFSAATGELVESHQLLSWSFNSSTGMWLFISIFY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0334300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g24770 | SBH | 2.847247 | 1.980998 | 0.176995 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0334300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011890 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012040 | SBH | 0.0 | 0.473211 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012090 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011930 | SBH | 0.0 | 0.081322 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011840 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0231100 | SBH | 0.007228 | 0.478843 | 0.2131335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0244400 | SBH | 0.086921 | 3.4955445 | 0.0126215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011420 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011600 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011490 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011710 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011640 | SBH | 0.0 | 0.000000 | 0.0 |
