Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os08g23620 OGI:08039910 | 3/16 Nipponbare | IRGSP 1.0 | MSU Chr08:14293963-14299947
Gene Symbol -
DNA seq

ATGCCCCTCACATACAATTTGCAAGTCGAGATATTCGATGTTTGGGGTATAGACTTCATGGGACCTTTCCCTAAGTCTTGCAACTGCGAGTACATTCTGGTGGCAGTCGACTATGTCTCCAAGTGGGTTGAGGCTATGCCGTGCAGTGCTGCGGATGCGAGGCATGCCAAGAAGATGTTCACAGAAATCATCTTCCCAAGATTTGGTACCCCCAGGATGGTCATAAGTGACGGAGGTTCTCATTTCATTGACAAAACCTTCCGAGACCTCCTACGAGAAATGGGAGCCAAACACAATGTGGCCACACCTTACCATCCACAGACCAGTGGTCAAGCAGAAACATCAAACAAACATATCAAAAACATTATGCAGAAGACGGTCAACAAAATGGGAATAGGATGGAAGGATATATTGCCGGACGCACTGTGGGCATACCGGACAGCGTACAAGACACCGTTGGTATTTCTTAACGACATTGCTAGAAATATAATTCCCAGCAATGGCGCAGAAATACTTCTGGTATATTATGGTTACAGAGTTCATCCGCAAGCGCACGGATATACCATTGTAGCATTTCACCCGAGAGTATTCCAAGGGTATCGTATTTATTTTATCCCGTAGGAAGATCATGTAGAGAGAACTTAACTAATTACTTATATATTACTTGTGATAATCATATTCTAAGTAGGGGTTAAGATAAGTCCAAGGGTAGAGTGACAAACAAGCATTAACTACTCATTCTCATAATAATTAATCTAAGCTAGGTGGAAAGAAAAGAGAAAGAGAATCTATTCCTATACCTCTAATATAAATAGTATACATACATTCTAGTTAACTGGTATACTAGCTAATACCCTCTATCTGATGCCCTCCTGGTACTTCGAGAAGCCACCCCTGACTGCCGAGTTCCTTACGATAGCCCGTCATGACCATCCAACCGGGGCTAAATATGGAGGAATACCCTCCCTAGGAAATTAACTTAGGATTATTTATAGGTGCGGAGGAATACCCGTACTGAGCTGTCACCATCAGCGGCCCACCTCTCATCCGGAATATATAATCCTAAATAATGATATCCCGTAATCTAGACACCATGTCTAAACTACCAGATACTACTCTAATATCATCGTCATGACATAGAGTAATTGCATAAGCAAACACTATACCCGCACCAAAGCATCTCCCAGATAAGCTAGCAATATACTCACTATAACATGAACATAATGTAAAGTAGGTACTCATATACTCGGAAAGTATTCCAATACCAGAAATGTACAAAGAAGAGTATTCTAATAAAAGTACAAGGCTTACAAAAGAGGAAAGGAAAGCTACTAGAGCCATACCCGAACTCTTCCGAAGACTTTCGGACTCCTGATTCCTATTCTAATTCTATTCCACCAGCTAGATACTACTAACTAAACTTGAGAGGAATGAGAGAGCTCTTGCTTGATGTGTGTGTTGAAGTGAAGAGAGTGAGCTTCTTAAATAGGTAGGTAATGACGGTTATGGTGGTTGGAAAGTTCGGTAATTGTCACACCCTAAAAATCCTAAATATATAAATTGTTGCTTAAATGGAATTATTAGAATTTATTTTAAAAGCCTAGAAGAGAAGATCTAATTTTAATTAATAAATTCCAATATAAAATGGGGCCAGATAAAATTTCATTAAATACTTTGCTTAATTCTATAATTCCTAGATTTTTCTGGGATTTATTTGAGCTAAGGAAGTATTTTTAATAAATGAAATTGCATTTAATGAATAATTTAAATTGAAAAAGGTTTTTAAAAGTCTCTTTTGGCTTTGGGCCGAAAGACGGCCCAAAAACCTCTCTCCCTCTCTCCCTCGGCCCAGTCGGCCCAGTCCAGCAGCAGCCGCCGCTCGCGCGCGCGTCCGCCCGCTGACAGGTGGGGCCCACCTGTCGGAGTCATCGTCTTCCTCGCGTCGGCCGCCGCCCGAAACCCTAGCGCCGCGCCGCCGTCGCCGTCCGCTGCTCCTCCGCCGCTTCTTTGGTCACCGGTGAGTTCGCCGCAACGTTCTCTATGTCCTGGTGCCCTCCGTTCGTGCCGAAGCGCCGTCGTTCGCCGGCGAGCTTGCGCGCCCGAGCCGCCGAGCCGCCGCCGGAGATGACGTCACCGCTGACGTCATCAGGGTCTGTCTGCTGTGAGCCGCCGTGGACCGCTCGATCTCGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTTCGTTCCCGTGAACCGCTGCCGTGCGCCCGGTCCACCGCAAACCCTAGCCGCTGACGCAATAAACCCTTTTTCCTTTGCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAAATCGATTTAATCTTTGAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTATTGTTCAAGCTTGTTTATGTGCTGTTTGGGTGTTTTTGCTCTTTTCTGTTTAGATTCCGACGTTTCCGGAGAGTCCGTTTTCGCAGGAGAAGAATTTGAAGAGTTCCAAGGCCAGCAAGGCAAGTCACACAGATCCCAAACAATCCTTTGAGCATGTTGATCCCGTTTAAAGCTATTGTTTCTATTCAACTATCGCATTTATTTTCGAATGTCATTGGGTGGAATTAACCTATTGTTTGTTATAGCCCTTTTGTTCTTGAATACTTTATTCCTTGATACCTTGGGTTATTATAACTTGACTAGTTGGGCTATATATATTGGTTCGACTACATATTAGATGTGATTGCTTAGCCATGCTTAGAAACATTAGCACACTATTGGGATAACTTATGACTCACTATTATTTAATGATGGCTTAATGATAGTTCACGATGGTCAATCGTGATTGGTTAATTAATTACTTGCCAATTAAAACTTGATAATGGTGGGTTGTGAGCACATGGTTTTGAGAGTCGTGCTCATGACAATTAAGGACCGGTTCACGAGTTTCGGTTGTGAAACATTAACCGTGCCAACCACAAGCCAGCGTGGGCAACGGCTTTACCTTTTGTATAGCATGGTTCATTGCGGAGCACCAGACTGAGAAGTGGCGGAGATAAACCCACGGGGGTCGCTGGGGAGTCCATGCCTTGTTTATAAGGGGGTGATTATGATCCAGGAAAGGTGCTCTGTAGTGGATTGTGTTGTGCGAGGGGTATTGTCACAGCTCCTTTCCGAGGTACCGTGGTGGTATTGAGGCACATGGTGACATGATGTGGGGCTGTGTCTTGTGGGTACAGTGGTACACCTCTGATCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTTATGGGCGGGTCTAACAATGTCTTTCGTGATTAGTCTCACACCTCTCATCATGATAACAGATGCTATAACTGGTAATAATTTGTTTAGCTCCTGGTTTGGAATGGTATATTCCTGGTTTGGAGATAGATCTGTACAGCCGGGTATGGTTGTTCAGAAAGGTTGGGCCTATACAACAGGGTATGTTGTATAGCGTTGAATTAATATTGTTTAATTATTACTTAACTGTTTTATTAAATTCTGAAATGTTTATTAAAGGCTGTTTATGCAAATGGAACCCTATTATGCCATCCTTTGTTATCCTGTGCACTTGCATATTTGCTGCGTGACTTGCTGAGTATGTCATATACTCACCTTGCAATCATTCATCAGAGGAAGAGTTCTACAGTGAAGCTGATGGTGTGGAGGATTAGGTGTAGCCCTGGTCAAGCTGCCTGTGGAGTGGAGTCGTCTGCGCCGTTTATCTTATCTTTCCGCTGCTTAGATCTTTATTGATTGAGAGGAACTATCTACCTCTGTAATGACATTTTATACGCTTATTAATTAGAGTAATAATTGTACTCTATTATCAATTTGTTATTGTGTGCCTCGGCTGATTCCTGGACGAGGGTTCACACACATGTAAGCGTTTGGAATTTTGGATAGAAATTCCGGGCGTGACAAGTTAGTATCAGAGCCCCCTTGACCCTAGGTTATGCCAAATGGTTATCCATAGAAGCCCTCTAAAAATATTGGAAAAGTAGAATTGTTCTCCTCCCCTTCTCTTTTAATTAAACCAAACTAATGGCACATGCATTTCATAATCTCTTTTAGTGGTTCTCATTCAAAATTTATTCCAGTGTTATTAGTACCGTACATCTATTACTGTACTAATGGCTCATCTACCAGCAAAAGTTTTACAATATTGTTTTATTTAGTCTTGCTGCAATGAAATAAATTTAGCATGTTGATTTTATAACTTTATTCCTTTTGAAACCGGTTGTTCAAAAGTACAAAATTTGTGACCTCGTTTCCAGCTGTTTCAACTTATCTTGCAAGCTTGGTTTATTTTATTTACTTACCTTTTACTTTGATTTTCTAACTTTATTCAAATTAATCCAAAAACTTGTGCTATTAATTGGATAAATGTCTTAACTCCCTCCTTTCACTTGTCTTTAGATGCCGCGCTATAAGCCTGAGTACTTGTTTGGTGTTGAGGGATTTGTCCAAGAGTTGCGTACGATGTCCTTTGTCATAGGATTTGGGACTGCCTCTTTTTATGCCCAGATTCCTCATGATCGTCCTGAAGAGAAGTGCCGAGTCAAAGTCACCTTGAACAGTAATAGTGAAGATATCCCCTCAGTGATGTTCGAAGCTGGAGGAAGAAACTACATCCATGCATGTCAGGAGGTGGCAAGGATCGCCATAGGAGAGCTCCGCGATCGCTACAGTGATCAGTTGGCCGACACTGAGTATCGCTACCATCCTCGCCAACCATAGGGAAGTGACCGTGGCAGTTACCTTGACACTGAAGGAATTGAGAATGATGCTACCACAAGGCATTTGGTTGAGATGCTGTGGGCTATGGATGAAACCCGTGCGGAGACTGTGTTAGCGGCTCAAGATCATGAAGATCGGAATCGTGGTAAGATTTGCAAGCTAGAGGACAAGGTGGATCGTTTGGAGAAGGAACTAGCCGCATTGAAGGGAGAAGCACCACCGCAGAAGGCCAGGATTCGTCTTACCGCAAGGAAGAGAGCTCTATTTGTCCCTCGTTACCAATTGGCGCCAAAGGTCCGTGTGGTGGAAAAAGAAGTTACCCCAGCCCTAGCGGATCCTCCGGTCGTCAATATAAGTGATGATGAAGGAGAAGAATCGAAGCGCACCCATTCCAAGATCGAGTGGGGAGCAACTCAAGATGATGGAGACGAGCCGAACGAGCCTTCAATCAACTCCGATGCTCGGAAGAATTAGAAAGCTTTGTCAAACCGTTGTCTTAGATCGTTGTGTTAGTTTGCTTGTTTTAAGTTTGGTTGTGTGTGTCTCGCATGTGATTTACATCAGTGGTGGGATGTAAGTGCGTGCGTTTGTTTGCTTTCGAGTGTTAGGTAGTTGGTGAGGTTAGTGGTGTGAGAGTCTTCAGTTTGTAATAATGAAACTCACTTAAGATCAATAAAAGTTAAAGTAATTCTCGGTCCTAAGTAGTTTTCCCCGGTTTCTCTCTTGTGCACTTGCCCATGTCAGATGGTGCTCACTCGCAGCAACGGGAATGGCCCCAACAACAACAATAACAACAACAACAACAATGGAGAAAATCCCACACTTGCCCAAGTCCTGGCTCAACAGGCACAGCTTATGAACATGATGATACAGCAACTCCAGAACCAGCAGAACCAGGGAAATAACCATGCGCCTCCCCAGAACAAGTTAGCAGAATTTCTTCGTGTAAGGCCGCCCACTTTCTCTAGTACCACTAATCCTGTTGAAGCTGGTGATTGGCTGCATGCCATAGAAAAGAAGTTGGATTTGCTTCAGTGCACCGATCAGGAGAAGGTCTCATTTGCATCACACCAGTTGCATGGCCCTGTCTCTGAGTGGTGGGATCATTTCCGCCTTAACAGGACTACTGCTGAACCTATCTGTCGGTGA

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CDS seq

ATGCCCCTCACATACAATTTGCAAGTCGAGATATTCGATGTTTGGGGTATAGACTTCATGGGACCTTTCCCTAAGTCTTGCAACTGCGAGTACATTCTGGTGGCAGTCGACTATGTCTCCAAGTGGGTTGAGGCTATGCCGTGCAGTGCTGCGGATGCGAGGCATGCCAAGAAGATGTTCACAGAAATCATCTTCCCAAGATTTGGTACCCCCAGGATGGTCATAAGTGACGGAGGTTCTCATTTCATTGACAAAACCTTCCGAGACCTCCTACGAGAAATGGGAGCCAAACACAATGTGGCCACACCTTACCATCCACAGACCAGTGGTCAAGCAGAAACATCAAACAAACATATCAAAAACATTATGCAGAAGACGGTCAACAAAATGGGAATAGGATGGAAGGATATATTGCCGGACGCACTGTGGGCATACCGGACAGCGTACAAGACACCGTTGGTATTTCTTAACGACATTGCTAGAAATATAATTCCCAGCAATGGCGCAGAAATACTTCTGATTCCGACGTTTCCGGAGAGTCCGTTTTCGCAGGAGAAGAATTTGAAGAGTTCCAAGGCCAGCAAGGCAACTCCTGGTTTGGAATGGTATATTCCTGGTTTGGAGATAGATCTGTACAGCCGGATGCCGCGCTATAAGCCTGAGTACTTGTTTGGTGTTGAGGGATTTGTCCAAGAGTTGCGTACGATGTCCTTTGTCATAGGATTTGGGACTGCCTCTTTTTATGCCCAGATTCCTCATGATCGTCCTGAAGAGAAGTGCCGAGTCAAAGTCACCTTGAACAGTAATAGTGAAGATATCCCCTCAGTGATGTTCGAAGCTGGAGGAAGAAACTACATCCATGCATGTCAGGAGGGAAGTGACCGTGGCAGTTACCTTGACACTGAAGGAATTGAGAATGATGCTACCACAAGGCATTTGGTTGAGATGCTGTGGGCTATGGATGAAACCCGTGCGGAGACTGTGTTAGCGGCTCAAGATCATGAAGATCGGAATCGTGGTAAGATTTGCAAGCTAGAGGACAAGGTGGATCGTTTGGAGAAGGAACTAGCCGCATTGAAGGGAGAAGCACCACCGCAGAAGGCCAGGATTCGTCTTACCGCAAGGAAGAGAGCTCTATTTGTCCCTCGTTACCAATTGGCGCCAAAGATGGTGCTCACTCGCAGCAACGGGAATGGCCCCAACAACAACAATAACAACAACAACAACAATGGAGAAAATCCCACACTTGCCCAAGTCCTGGCTCAACAGGCACAGCTTATGAACATGATGATACAGCAACTCCAGAACCAGCAGAACCAGGGAAATAACCATGCGCCTCCCCAGAACAAGTTAGCAGAATTTCTTCGTGTAAGGCCGCCCACTTTCTCTAGTACCACTAATCCTGTTGAAGCTGGTGATTGGCTGCATGCCATAGAAAAGAAGTTGGATTTGCTTCAGTGCACCGATCAGGAGAAGGTCTCATTTGCATCACACCAGTTGCATGGCCCTGTCTCTGAGTGGTGGGATCATTTCCGCCTTAACAGGACTACTGCTGAACCTATCTGTCGGTGA

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Protein seq

MPLTYNLQVEIFDVWGIDFMGPFPKSCNCEYILVAVDYVSKWVEAMPCSAADARHAKKMFTEIIFPRFGTPRMVISDGGSHFIDKTFRDLLREMGAKHNVATPYHPQTSGQAETSNKHIKNIMQKTVNKMGIGWKDILPDALWAYRTAYKTPLVFLNDIARNIIPSNGAEILLIPTFPESPFSQEKNLKSSKASKATPGLEWYIPGLEIDLYSRMPRYKPEYLFGVEGFVQELRTMSFVIGFGTASFYAQIPHDRPEEKCRVKVTLNSNSEDIPSVMFEAGGRNYIHACQEGSDRGSYLDTEGIENDATTRHLVEMLWAMDETRAETVLAAQDHEDRNRGKICKLEDKVDRLEKELAALKGEAPPQKARIRLTARKRALFVPRYQLAPKMVLTRSNGNGPNNNNNNNNNNGENPTLAQVLAQQAQLMNMMIQQLQNQQNQGNNHAPPQNKLAEFLRVRPPTFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPVSEWWDHFRLNRTTAEPICR

Function Pol polyprotein (Fragment) [UniProtKB/Swiss-Prot:P31792]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os08g23620 LOC_Os08g23620.1 Chr08 14293963 14299947 + MSU_osa1r7
CDS seq

ATGCCCCTCACATACAATTTGCAAGTCGAGATATTCGATGTTTGGGGTATAGACTTCATGGGACCTTTCCCTAAGTCTTGCAACTGCGAGTACATTCTGGTGGCAGTCGACTATGTCTCCAAGTGGGTTGAGGCTATGCCGTGCAGTGCTGCGGATGCGAGGCATGCCAAGAAGATGTTCACAGAAATCATCTTCCCAAGATTTGGTACCCCCAGGATGGTCATAAGTGACGGAGGTTCTCATTTCATTGACAAAACCTTCCGAGACCTCCTACGAGAAATGGGAGCCAAACACAATGTGGCCACACCTTACCATCCACAGACCAGTGGTCAAGCAGAAACATCAAACAAACATATCAAAAACATTATGCAGAAGACGGTCAACAAAATGGGAATAGGATGGAAGGATATATTGCCGGACGCACTGTGGGCATACCGGACAGCGTACAAGACACCGTTGGTATTTCTTAACGACATTGCTAGAAATATAATTCCCAGCAATGGCGCAGAAATACTTCTGATTCCGACGTTTCCGGAGAGTCCGTTTTCGCAGGAGAAGAATTTGAAGAGTTCCAAGGCCAGCAAGGCAACTCCTGGTTTGGAATGGTATATTCCTGGTTTGGAGATAGATCTGTACAGCCGGATGCCGCGCTATAAGCCTGAGTACTTGTTTGGTGTTGAGGGATTTGTCCAAGAGTTGCGTACGATGTCCTTTGTCATAGGATTTGGGACTGCCTCTTTTTATGCCCAGATTCCTCATGATCGTCCTGAAGAGAAGTGCCGAGTCAAAGTCACCTTGAACAGTAATAGTGAAGATATCCCCTCAGTGATGTTCGAAGCTGGAGGAAGAAACTACATCCATGCATGTCAGGAGGGAAGTGACCGTGGCAGTTACCTTGACACTGAAGGAATTGAGAATGATGCTACCACAAGGCATTTGGTTGAGATGCTGTGGGCTATGGATGAAACCCGTGCGGAGACTGTGTTAGCGGCTCAAGATCATGAAGATCGGAATCGTGGTAAGATTTGCAAGCTAGAGGACAAGGTGGATCGTTTGGAGAAGGAACTAGCCGCATTGAAGGGAGAAGCACCACCGCAGAAGGCCAGGATTCGTCTTACCGCAAGGAAGAGAGCTCTATTTGTCCCTCGTTACCAATTGGCGCCAAAGATGGTGCTCACTCGCAGCAACGGGAATGGCCCCAACAACAACAATAACAACAACAACAACAATGGAGAAAATCCCACACTTGCCCAAGTCCTGGCTCAACAGGCACAGCTTATGAACATGATGATACAGCAACTCCAGAACCAGCAGAACCAGGGAAATAACCATGCGCCTCCCCAGAACAAGTTAGCAGAATTTCTTCGTGTAAGGCCGCCCACTTTCTCTAGTACCACTAATCCTGTTGAAGCTGGTGATTGGCTGCATGCCATAGAAAAGAAGTTGGATTTGCTTCAGTGCACCGATCAGGAGAAGGTCTCATTTGCATCACACCAGTTGCATGGCCCTGTCTCTGAGTGGTGGGATCATTTCCGCCTTAACAGGACTACTGCTGAACCTATCTGTCGGTGA

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Protein seq

MPLTYNLQVEIFDVWGIDFMGPFPKSCNCEYILVAVDYVSKWVEAMPCSAADARHAKKMFTEIIFPRFGTPRMVISDGGSHFIDKTFRDLLREMGAKHNVATPYHPQTSGQAETSNKHIKNIMQKTVNKMGIGWKDILPDALWAYRTAYKTPLVFLNDIARNIIPSNGAEILLIPTFPESPFSQEKNLKSSKASKATPGLEWYIPGLEIDLYSRMPRYKPEYLFGVEGFVQELRTMSFVIGFGTASFYAQIPHDRPEEKCRVKVTLNSNSEDIPSVMFEAGGRNYIHACQEGSDRGSYLDTEGIENDATTRHLVEMLWAMDETRAETVLAAQDHEDRNRGKICKLEDKVDRLEKELAALKGEAPPQKARIRLTARKRALFVPRYQLAPKMVLTRSNGNGPNNNNNNNNNNGENPTLAQVLAQQAQLMNMMIQQLQNQQNQGNNHAPPQNKLAEFLRVRPPTFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPVSEWWDHFRLNRTTAEPICR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.131101 0.000000 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0315200 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g23390 RBH 0.0 0.000000 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os08g0315200 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0215400 RBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0235600 RBH 0.3533875 6.4869335 0.366027
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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