Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os08g23470 | OGI:08040960 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr08:14209891-14213318 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGAGAGCAATAACCGTGATATAATTGAGAGAACCGAAGGAGAAAAAAACAGCGGAAAGCCTGCTTACAGCCCCTGAACAGTTGATAACTAACTACAAAAGCATTGCACCAAAAGTAAGTATCAGTAATTACATGGGTCATTAATTAGCAAGGGAACCCCCCTAGTGTATCACCCAAAAAAAGAGAATTAGCAAGGGAAATCACCATCTAATCAGCATGCAATGTACTAGTTCAATAACAACTTAGTACCAGTAGTTGCATAAACTGTGGATAGACTACCATTCTCAGCAGCACAAAAGCACCAGCAACAGTCATCAGAGAAATCAGCAGATTCAACAGGCTTTTCGATTAACAGATATCCTTTGCCCTGATGATATGAACTTTCATTGTGCATTTATGATTCTTCAACAGCTCGAACAGGCAGATATCACCCACTCCAACATCATTGTCTTCCGCAAACTTTCGGCATCCACCAACCATCCTTCTGTTACCACTCGAATCAGAAAGCCTGATGTTCCACTTGTCCCCAAGACGCGAAAGACGGATAGTTTTCTCGTCTTGAAGGTAATTATCAACATATCGGTTGGCGATACTCTAGTTGCATACATGAAAGAAAAATGAGATGATGGAATCATCGCAAATAAATTATAACTAAAACAATTAGGCACTGCATCATATATATTAAGCAACCGCAGCAAGCATATCACATGTAAATTCAGTGCTTACAGCTTAGTACTCCATCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCAAATTCATATTGATGCTAATTAATCTAGACATATATATCTATCTAGATTCATTAGCATCAATATGAATGTGGGAAATGCTAGAATGACGGAGGAAGTAGGTTATAATTAACAACATGAAGAATACTTTTTCATCGGTAATCAAACACCAGTATAAATAGTGCATAATTAAGAAGTATGCACATTCGACAAAGAAATATGGCACTCACTAGAGAGGATATTCTTCCAGAGGCGTTGTTCTTTCCAATGACAGATACAAAGATTGGAATTTGAGAACCAATATTTTGGATCTTGCGCTTCACCACATTCACCTGAACTCGACTTAGTATGGTCTTTTGCCCGATGATGGGATCAGGTATAACACCTACTCTGCAATCCTGATCTTTAGAGGACAAAGAATATCCTGTGTGCAAAGAAAAGAAAACATCAGATGTGCTTTATCAGGAAATGCATATAATAATTGAGTTGTAACCAGATGACATGGAGGAGGAACTCATCGTGGTCATGTTGCCTTTACTTGAGTTACCTCTTTGCACCTGTGTCAATCTATCCGTTGGTTGTGACTGCATTTGCAAGGGCCTAGCATGAGCATGAGAAAGGGCAACGTTTTCAAGTGGCATTTCCATGGGACCAGTAGGAGCATGACAATGGTTCACAGTTTCGGTAGGGAATTGCATCGGCATGGGTTGAGGATGAGCATGAGAAAGGGGCATGCAATCAACAGCAGTATGCATGGGACAAGGACGAGCATGTGAATGGTTCACAGTTTCAGTAGTTGACTGCATTGGCATGGGCTGAGAATGAGCGCGCGAACTGTTCAATGTTTCAGTAGCATCTACACGCCTTTCTTGCACATTAGGATTCTGAGAATCATCCACAACAGCAGAACATGCTTTCTCGCGGCCAATTTGATCAACTATAATGACATCAAACTGAGAATTTCCATTGAATCTGAACATCATGGAGTCACCCATCTGCAGATCAAAGGTTTTGACGAATTGTGCCCATCCCTCTGTAAAGATAACCTTTTCTTGGGTCTTGTCAACTCTAACAGTGTGACTGTTTCTGTTACGTGTTTCCAGTTGGATTTCTCCAGGGATGTCACCCTTTAAACGCTGCACAAATTCTTTTGGAATGATCTGCAGAAACATATTTTTGAGGGTGTTAGTTTGAATATAGTTTTATGATATACTAGCTGCTCTACTATGTTTTCCTCTCCTCCTCACTATGAAGGCAATAGATAGCCCAAACCAGAATGCTACAATATAACGCATGCTTCACCTTGATGCTACCAGCGTGGAGCTGTGTAGTTCTGATGAGATCTGGGTGATGTATGAACATCAAAGTTGAAATGCATGGGATAACAAGTAATTATGATTTTTTGCGGCATGTTATTGATGAGTCACTAGCGCTAATTCCGCTGTGATTTTTTTCCCAAATGACAAGTAGTTAAATATATGTCAGTTCAGTGTTATGAACTCGTTTGTTGTTTGCAGGCTATTTCTTTCATTGCTACAGTTTGTTCACATAATTTTGGTGTTAGTTTAAATGTATATCAGTCGTTCAGTACATGCACATAATTCGATCTTTGCAATTGATATATTTATATTAATGTTTTCATGTTTATGTTCAATGTGGGGCCTCTCTTTTTAGTTCCACTCTGGGCCACAAAAATCTCAGGGTAGGCCCTGATTTCTGTATGTGACTACAGAACAAACTGACGAAATTGAAAAGCCTAATTTCTTGCTTTTTAAAATATTACATCTGGTGCTAACCAACAAACCTAATGTGGTATCATATTATTGGCTTAAATCCGGGCATCAATACTTGTTTCTTTTAAGAGGGTACAATCTAGTCACCGAATTATTGAAATTTGCAAGGAAGATCATGCTTGTACCAAACAGAACTTGTAAGAAGCAAAGAAACAAAAAAAAAATACAAACGGCAAGGGAAAAGAAAAGAAGCAGCATTGCATTTCATAAAAAAAAATATTTGGCTTACCATCTCATGTTGAAAATCACCCATCATAGTTAGCAAGAAGTGTTTTTGGGAATCATCCAAATTCCTGTAGTCCTGCTCATCGCGCCGTCTGCATCTTTCGCACGATGTGCCCATCGTTTTTCAACAAACCTGCAGTGTCAAAATATTACTTTTCAGTGGAAATTTTTGTTCATCTTTCACTTCAGAAAAATGGCATGAACAACAACGACAACCACCACAAGAAAAAGGCCCGTGAATCACCATATTTCCAGCTTGAAAACTAAATCTAATCGGCAAAAATTCCTCATCCGAGTTGATGCGATCCTACAAACTAGTTTACTTGATCAGGGAGGGGGAACAGAAATGGAGTAGTAACAAAACAAACCGACGGCTTCGTGGTCGCCGCCGCCGGCCGTCCCCCCTGCCTCGGCTGCTCTCGGCCGCCGCGCGGGAGGTCTCTCTCTCTCGGCCGCATCCGCCCACGGCCCAAAACCCCATCGCCGCGGCAAAAGAAGGCGTGAATCTTTTCTTCTTTCCCCCAAACCCTCCATGCGCTCTCCTCGTACAAACCCTTCCATACCCACACAGCTTTGGAAGAAGACACAACTTTTCACAGTTTTATCATGAAACCGACCAGATAAAGATGGTGAAAAATCGTTCTAGCCCGGTCCCCCCA
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| CDS seq | ATGGGCACATCGTGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAGATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTTGATCAAATTGGCCGCGAGAAAGCATGTTCTGCTGTTGTGGATGATTCTCAGAATCCTAATGTGCAAGAAAGGCGTGTAGATGCTACTGAAACATTGAACAGTTCGCGCGCTCATTCTCAGCCCATGCCAATGCAGTCAACTACTGAAACTGTGAACCATTCACATGCTCGTCCTTGTCCCATGCATACTGCTGTTGATTGCATGCCCCTTTCTCATGCTCATCCTCAACCCATGCCGATGCAATTCCCTACCGAAACTGTGAACCATTGTCATGCTCCTACTGGTCCCATGGAAATGCCACTTGAAAACGTTGCCCTTTCTCATGCTCATGCTAGGCCCTTGCAAATGCAGTCACAACCAACGGATAGATTGACACAGGTGCAAAGAGGTAACTCAAGTAAAGGCAACATGACCACGATGAGTTCCTCCTCCATGTCATCTGGTTACAACTCAATTATTATATGCATTTCCTGA
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| Protein seq | MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREKACSAVVDDSQNPNVQERRVDATETLNSSRAHSQPMPMQSTTETVNHSHARPCPMHTAVDCMPLSHAHPQPMPMQFPTETVNHCHAPTGPMEMPLENVALSHAHARPLQMQSQPTDRLTQVQRGNSSKGNMTTMSSSSMSSGYNSIIICIS |
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| Function | B3 domain-containing protein Os08g0324300 [UniProtKB/Swiss-Prot:Q6Z0D9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os08g23470 | LOC_Os08g23470.1 | Chr08 | 14209891 | 14213318 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGCACATCGTGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAGATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTTGATCAAATTGGCCGCGAGAAAGCATGTTCTGCTGTTGTGGATGATTCTCAGAATCCTAATGTGCAAGAAAGGCGTGTAGATGCTACTGAAACATTGAACAGTTCGCGCGCTCATTCTCAGCCCATGCCAATGCAGTCAACTACTGAAACTGTGAACCATTCACATGCTCGTCCTTGTCCCATGCATACTGCTGTTGATTGCATGCCCCTTTCTCATGCTCATCCTCAACCCATGCCGATGCAATTCCCTACCGAAACTGTGAACCATTGTCATGCTCCTACTGGTCCCATGGAAATGCCACTTGAAAACGTTGCCCTTTCTCATGCTCATGCTAGGCCCTTGCAAATGCAGTCACAACCAACGGATAGATTGACACAGGTGCAAAGAGGTAACTCAAGTAAAGGCAACATGACCACGATGAGTTCCTCCTCCATGTCATCTGGTTACAACTCAATTATTATATGCATTTCCTGA
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| Protein seq | MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREKACSAVVDDSQNPNVQERRVDATETLNSSRAHSQPMPMQSTTETVNHSHARPCPMHTAVDCMPLSHAHPQPMPMQFPTETVNHCHAPTGPMEMPLENVALSHAHARPLQMQSQPTDRLTQVQRGNSSKGNMTTMSSSSMSSGYNSIIICIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.290166 | 0.246013 | 0.281405 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0324300 | RBH | 0.445867 | 0.380083 | 1.111788 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g23570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0324300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011370 | SBH | 0.0 | 0.0 | 0.539293 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011500 | RBH | 0.115876 | 0.0 | 0.791402 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011560 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011410 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011320 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0221100 | RBH | 0.0451685 | 0.046133 | 1.067614 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011420 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0232600 | RBH | 0.2420435 | 0.0780535 | 0.731376 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0010920 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010960 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011740 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010960 | RBH | 0.048503 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011200 | RBH | 0.065051 | 0.0 | 0.175059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011140 | RBH | 0.448294 | 0.000000 | 1.673550 |
