Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsR498G0815780600.01 | OGI:08040960 | 44/50 | Os XI-1B: R498 | R498 | SICAU | Chr08:14811004-14814751 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | TGAGAGCAATAACCGTGATATAATTGAGAGAACCGAAGGAGAAAAAAACAGCGGAAAGCCTGCTTACAGCCCCTGAACAGTTGATAACTAACTACAAAAGCATTGCACCAAAAGTAAGTATCAGTAATTACATGGGTCATTAATTAGCAAGGGAACCCCCCTAGTGTATCACCCAAAAAAAGAGAATTAGCAAGGGAAATCACCAGCTAATCAGCATGCAATGTACTAGTTCAATAACAACTTAGTACCAGTAGTTGCATAAACTGTGGATAGACTACCATTCTCAGCAGCACAAAAGCACCAGCAACAGTCATCAGAGAAATCAGCAGATTCAACAGGCTTTTCGATTAACAGATATCCTTTGCCCTGATGATATGAACTTTCATTGTGCATTTATGATTCTTCAACAGCTCGAACAGGCAGATATCACCCACTCCAACATCATTGTCTTCCGCAAACTTTCGGCATCCACCAACCATCCTTCTGTTACCACTCGAATCAGAAAGCCTGATGTTCCACTTGTCCCCAAGACGCGAAAGACGGATAGTTTTCTCGTCTTGAAGGTAATTATCAACATATCGGTTGGCGATACTCTAGTTGCATACATGAAAGAAAAATGAGATGATGGAATCATCGCAAATAAATTATAACTAAAACAATTAGGCACTGCATCATATATATTAAGCAACCGCAGCAAGCATATCACATGTAAATTCAGTGCTTACAGCTTAGTACTCCATCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCAAATTCATATTGATGCTAATTAATCTAGACATATATATCTATCTAGATTCATTAGCATTAATATGAATGTGGGAAATGCTAGAATGACGGAGGAAGTAGGTTATAATTAACAACATGAAGAATACTTTTTCATCGGTAATCAAACACCAGTATAAATAGTGCATAATTAAGAAGTATGCACATTCGACAAAGAAATATGGCACTCACTAGAGAGGATATTCTTCCAGAGGCGTTGTTCTTTCCAATGACAGATACAAAGATTGGAATTTGAGAACCAATATTTTGGATCTTGCGCTTCACCACATTCACCTGAACTCGACTTAGTATGGTCTTTTGCCCGATGATGGGATCAGGTATAACACCTACTCTGCAATCCTGATCTTTAGAGGACAAAGAATATCCTGTGTGCAAAGAAAAGAAAACATCAGATGTGCTTTATCAGGAAATGCATATAATAATTGAGTTGTAACCAGATGACATGGAGGAGGAACTCATCGTGGTCATGTTGCCTTTACTTGAGTTACCTCTTTGCACCTGTGTCAATCTATCCGTTGGTTGTGACTGCATTTGCAAGGGCCTAGCATGAGCATGAGAAAGGGCAACGTTTTCAAGTGGCATTTCCATGGGACCAGTAGGAGCATGACAATGGTTCACAGTTTCGGTAGGGAATTGCATCGGCATGGGTTGAGGATGAGCATGAGAAAGGGGCATGCAATCAACAGCAGTATGCATGGGACAAGGACGAGCATGTGAATGGTTCACAGTTTCAGTAGTTGACTGCATTGGCATGGGCTGAGAATGAGCGCGCGAACTGTTCAATGTTTCAGTAGCATCTACACGCCTTTCTTGCACATTAGGATTCTGAGAATCATCCACAACAGCAGAACATGCTTTCTCGCGGCCAATTTGATCAACTATAATGACATCAAACTGAGAATTTCCATTGAATCTGAACATCATGGAGTCACCCATCTGCAGATCAAAGGTTTTGACGAATTGTGCCCATCCCTCTGTAAAGATAACCTTTTCTTGGGTCTTGTCAACTCTAACAGTGTGACTGTTTCTGTTACGTGTTTCCAGTTGGATTTCTCCAGGGATGTCACCCTTTAAACGCTGCACAAATTCTTTTGGAATGATCTGCAGAAACATATTTTTGAGGGTGTTAGTTTGAATATAGTTTTATGATATACTAGCTGCTCTACTATGTTTTCCTCTCCTCCTCACTATGAAGGCAATAGATAGCCCAAACCAGAATGCTACAATATAACGCATGCTTCACCTTAATGCTACCAGCGTGGAGCTGTGTAGTTCTGATGAGATCTGGGTGATGTATGAACATCAAAGTTGAAATGCATGGGATAACAAGTAATTATGATTTTTTGCGGCATGTTATTGATGAGTCACTAGCGCTAATTCCGCTGTGATTTTTTTCCCAAATGACAAGTAGTTAAATATATGTCAGTTCAGTGTTATGAACTCGTTTGTTGTTTGCAGGCTATTTCTTTCATTGCTACAGTTTGTTCACATAATTTTGGTGTTAGTTTAAATGTATATCAGTCGTTCAGTACATGCACATAATTCGATCTTTGCAATTGATATATTTATATTAATGTTTTCATGTTTATGTTCAATGTGGGGCCTCTCTTTTTAGTTCCACTCTGGGCCACAAAAATCTCAGGGTAGGCCCTGATTTCTGTATGTGACTACAGAACAAACTGACGAAATTGAAAAGCCTAATTTCTTGCTTTTTAAAATATTACATCTGGTGCTAACCAACAAACCTAATGTGGTATCATATTATTGGCTTAAATCCGGGCATCAATACTTGTTTCTTTTAAGAGGGTACAATCTAGTCACCGAATTATTGAAATTTGCAAGGAAGATCATGCTTGTACCAAACAGAACTTGTAAGAAGCAAAGAAACAAAAAAAAAATACAAACGGCAAGGGAAAAGAAAAGAAGCAGCATTGCATTTCATAAAAAAAAATATTTGGCTTACCATCTCATGTTGAAAATCACCCATCATAGTTAGCAAGAAGTGTTTTTGGGAATCATCCAAATTCCTGTAGTCCTGCTCATCGCGCCGTCTGCATCTTTCGCACGATGTGCCCATCGTTTTTCAACAAACCTGCAGTGTCAAAATATTACTTTTCAGTGGAAATTTTTGTTCATCTTTCACTTCAGAAAAATGGCATGAACAACAACGACAACCACCACAAGAAAAAGGCCCGTGAATCACCATATTTCCAGCTTGAAAACTAAATCTAATCGGCAAAAATTTCTCATCCGAGTTGATGCGATCCTACAAACTAGTTTACTTGATCAGGGAGGGGGAACAGAAATGGTGTAGTAACAAAACAAACCGACGGCTTCGTGGTCGCCGCCGCCGGCCGTCCCCCCTGCCTCGGCTGCTCTCGGCCGCCGCGCGGGAGGTCTCTCTCTCTCGGCCGCATCCGCCCACGGCCCAAAACCCCATCGCCGCGGCAAAAGAAGGCGTGAATCTTTTCTTCTTTCCCCCAAACCCTCCATGCGCTCTCCTCGTACAAACCCTTCCATACCCACACAGCTTTGGAAGAAGACACAACTTTTCACAGTTTTATCATGAAACCGACCAGATAAAGATGGTGAAAAATCGTTCTAGCCCGGTCCCCCCAATGAAAAGAAAATCTTCAAATAATGAACAACCCAGTTATAATACTACTAGTAGAAGAATAGCAAGCACTAGACAACCTAGACCAAAAGGTGAAAGACAACAAGAATATTGGATACTAGCTATAATATGATTGGATTGTTTCTTTCCTTCCTTCGGGGAGAAGAGAAAGCGATAGGGAGTGACGTTCTTGATTTCATTACTAGTACTAGATCCTCCATACCTTTCTTCTTCTATTTTCTTTTTTCCACGGAACAATCTTCTTCTATTCTGAGTTTCTGACCCGCAACCATGAACCCTCCTTTGCTTCCCCTGGTGGTCTTC
More
|
||||||||||
| CDS seq | ATGGGCACATCGTGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAGATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTTGATCAAATTGGCCGCGAGAAAGCATGTTCTGCTGTTGTGGATGATTCTCAGAATCCTAATGTGCAAGAAAGGCGTGTAGATGCTACTGAAACATTGAACAGTTCGCGCGCTCATTCTCAGCCCATGCCAATGCAGTCAACTACTGAAACTGTGAACCATTCACATGCTCGTCCTTGTCCCATGCATACTGCTGTTGATTGCATGCCCCTTTCTCATGCTCATCCTCAACCCATGCCGATGCAATTCCCTACCGAAACTGTGAACCATTGTCATGCTCCTACTGGTCCCATGGAAATGCCACTTGAAAACGTTGCCCTTTCTCATGCTCATGCTAGGCCCTTGCAAATGCAGTCACAACCAACGGATAGATTGACACAGGTGCAAAGAGGATATTCTTTGTCCTCTAAAGATCAGGATTGCAGAGTAGGTGTTATACCTGATCCCATCATCGGGCAAAAGACCATACTAAGTCGAGTTCAGGTGAATGTGGTGAAGCGCAAGATCCAAAATATTGGTTCTCAAATTCCAATCTTTGTATCTGTCATTGGAAAGAACAACGCCTCTGGAAGAATATCCTCTCTAAGTATCGCCAACCGATATGTTGATAATTACCTTCAAGACGAGAAAACTATCCGTCTTTCGCGTCTTGGGGACAAGTGGAACATCAGGCTTTCTGATTCGAGTGGTAACAGAAGGATGGTTGGTGGATGCCGAAAGTTTGCGGAAGACAATGATGTTGGAGTGGGTGATATCTGCCTGTTCGAGCTGTTGAAGAATCATAAATGCACAATGAAAGTTCATATCATCAGGGCAAAGGATATCTGTTAA
More
|
||||||||||
| Protein seq | MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREKACSAVVDDSQNPNVQERRVDATETLNSSRAHSQPMPMQSTTETVNHSHARPCPMHTAVDCMPLSHAHPQPMPMQFPTETVNHCHAPTGPMEMPLENVALSHAHARPLQMQSQPTDRLTQVQRGYSLSSKDQDCRVGVIPDPIIGQKTILSRVQVNVVKRKIQNIGSQIPIFVSVIGKNNASGRISSLSIANRYVDNYLQDEKTIRLSRLGDKWNIRLSDSSGNRRMVGGCRKFAEDNDVGVGDICLFELLKNHKCTMKVHIIRAKDIC |
||||||||||
| Function | B3 domain-containing protein Os08g0324300 [UniProtKB/Swiss-Prot:Q6Z0D9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsR498G0815780600.01 | OsR498G0815780600.01.T02 | Chr08 | 14811004 | 14814431 | - | IGDBv2 | ||
| CDS seq | ATGGGCACATCGTGCGAAAGATGCAGACGGCGCGATGAGCAGGACTACAGGAATTTGGATGATTCCCAAAAACACTTCTTGCTAACTATGATGGGTGATTTTCAACATGAGATGATCATTCCAAAAGAATTTGTGCAGCGTTTAAAGGGTGACATCCCTGGAGAAATCCAACTGGAAACACGTAACAGAAACAGTCACACTGTTAGAGTTGACAAGACCCAAGAAAAGGTTATCTTTACAGAGGGATGGGCACAATTCGTCAAAACCTTTGATCTGCAGATGGGTGACTCCATGATGTTCAGATTCAATGGAAATTCTCAGTTTGATGTCATTATAGTTGATCAAATTGGCCGCGAGAAAGCATGTTCTGCTGTTGTGGATGATTCTCAGAATCCTAATGTGCAAGAAAGGCGTGTAGATGCTACTGAAACATTGAACAGTTCGCGCGCTCATTCTCAGCCCATGCCAATGCAGTCAACTACTGAAACTGTGAACCATTCACATGCTCGTCCTTGTCCCATGCATACTGCTGTTGATTGCATGCCCCTTTCTCATGCTCATCCTCAACCCATGCCGATGCAATTCCCTACCGAAACTGTGAACCATTGTCATGCTCCTACTGGTCCCATGGAAATGCCACTTGAAAACGTTGCCCTTTCTCATGCTCATGCTAGGCCCTTGCAAATGCAGTCACAACCAACGGATAGATTGACACAGGTGCAAAGAGGTAACTCAAGTAAAGGCAACATGACCACGATGAGTTCCTCCTCCATGTCATCTGGTTACAACTCAATTATTATATGCATTTCCTGA
More
|
|||||||
| Protein seq | MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVDQIGREKACSAVVDDSQNPNVQERRVDATETLNSSRAHSQPMPMQSTTETVNHSHARPCPMHTAVDCMPLSHAHPQPMPMQFPTETVNHCHAPTGPMEMPLENVALSHAHARPLQMQSQPTDRLTQVQRGNSSKGNMTTMSSSSMSSGYNSIIICIS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0324300 | RBH | 0.445867 | 0.380083 | 1.111788 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g23470 | RBH | 0.290166 | 0.246013 | 0.281405 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0324300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011370 | SBH | 0.0 | 0.0 | 0.539293 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011500 | RBH | 0.115876 | 0.0 | 0.791402 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011560 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011410 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011320 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0221100 | RBH | 0.0451685 | 0.046133 | 1.067614 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011420 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0232600 | RBH | 0.2420435 | 0.0780535 | 0.731376 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0010910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011090 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010960 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011740 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010960 | RBH | 0.048503 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011200 | RBH | 0.065051 | 0.0 | 0.175059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011140 | RBH | 0.448294 | 0.000000 | 1.673550 |
| Os XI: R9311 | R9311 | AGIS | R9311C08g29153 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_08g0138800 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_08g0151100 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_08g0132100 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_08g0142100 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0813707300.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0827888600.01 | SBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0824976400.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0826962000.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0818502400.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0821943200.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0822878800.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0817656600.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0815029600.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0813455800.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0818710400.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0826714200.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0818499400.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0822511400.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0816432400.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0813988600.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0814079500.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0821672600.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0817203000.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0833828600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0822628100.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0818008200.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0813511200.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0819056800.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0820284900.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0823152200.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0819874200.01 | RBH | None | None | None |
